add javadoc to deploy the plugin

Author: carlosuc3m

src/main/java/ai/nets/samj/communication/model/EfficientSAM.java

@@ -32,6 +32,7 @@
 import ai.nets.samj.models.AbstractSamJ;
 import ai.nets.samj.models.EfficientSamJ;
 import ai.nets.samj.install.EfficientSamEnvManager;
+import ai.nets.samj.install.Sam2EnvManager;
 import ai.nets.samj.ui.SAMJLogger;
 
 /**
@@ -69,6 +70,9 @@ public EfficientSAM() {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public EfficientSAM(EfficientSamEnvManager manager) {
 		this.isHeavy = true;

src/main/java/ai/nets/samj/communication/model/EfficientViTSAML0.java

@@ -72,6 +72,9 @@ public EfficientViTSAML0() {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public EfficientViTSAML0(EfficientViTSamEnvManager manager) {
 		this.isHeavy = false;

src/main/java/ai/nets/samj/communication/model/EfficientViTSAML1.java

@@ -54,6 +54,9 @@ public class EfficientViTSAML1 extends SAMModel {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public EfficientViTSAML1() {
 		this.isHeavy = false;

src/main/java/ai/nets/samj/communication/model/EfficientViTSAML2.java

@@ -54,6 +54,9 @@ public class EfficientViTSAML2 extends SAMModel {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public EfficientViTSAML2() {
 		this.isHeavy = false;

src/main/java/ai/nets/samj/communication/model/EfficientViTSAMXL0.java

@@ -53,6 +53,9 @@ public class EfficientViTSAMXL0 extends SAMModel {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public EfficientViTSAMXL0() {
 		this.isHeavy = false;

src/main/java/ai/nets/samj/communication/model/EfficientViTSAMXL1.java

@@ -55,6 +55,9 @@ public class EfficientViTSAMXL1 extends SAMModel {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public EfficientViTSAMXL1() {
 		this.isHeavy = false;

src/main/java/ai/nets/samj/communication/model/SAM2Large.java

@@ -55,6 +55,9 @@ public class SAM2Large extends SAMModel {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public SAM2Large() {
 		this.isHeavy = true;

src/main/java/ai/nets/samj/communication/model/SAM2Small.java

@@ -54,6 +54,9 @@ public class SAM2Small extends SAMModel {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public SAM2Small() {
 		this.isHeavy = true;

src/main/java/ai/nets/samj/communication/model/SAM2Tiny.java

@@ -72,6 +72,9 @@ public SAM2Tiny() {
 
 	/**
 	 * Create an instance of the model that loads the model and encodes an image
+	 * @param manager
+	 * 	the model manager {@link Sam2EnvManager} that contains the info about where the model
+	 * 	environment and model weights are installed
 	 */
 	public SAM2Tiny(Sam2EnvManager manager) {
 		this.isHeavy = false;

src/main/java/ai/nets/samj/models/AbstractSamJ.java

@@ -243,7 +243,7 @@ public void setUsinIJRoiManager(boolean isUsingIJRoiManager) {
 	 * @param designationOfTheScript
 	 * 	the name (or some string to design) of the text that is going to be printed
 	 */
-	public <T extends RealType<T> & NativeType<T>> void printScript(final String script, final String designationOfTheScript) {
+	public void printScript(final String script, final String designationOfTheScript) {
 		if (!isDebugging) return;
 		debugPrinter.printText("START: =========== "+designationOfTheScript+" ===========");
 		debugPrinter.printText(LocalDateTime.now().toString());
@@ -883,7 +883,7 @@ List<Mask> processMask(RandomAccessibleInterval<T> img)
 	 * 
 	 * @param <T>
 	 * 	ImgLib2 datatype of the mask
-	 * @param img
+	 * @param rai
 	 * 	mask used as the prompt
 	 * @param returnAll
 	 * 	whether to return all the polygons created by EfficientSAM of only the biggest
@@ -912,6 +912,11 @@ private ArrayList<int[]> getPointsNotInRect(List<int[]> pointsList, List<int[]>
 		return not;
 	}
 
+	/**
+	 * 
+	 * @return a rectangle with the are that is currently encoded. This is the area where annotations can be
+	 * created in real time
+	 */
 	public Rectangle getCurrentlyEncodedArea() {
 		Rectangle alreadyEncoded;
 		alreadyEncoded = new Rectangle((int) encodeCoords[0], (int) encodeCoords[1],