convert2anndata/NAMESPACE at main · settylab/convert2anndata · GitHub

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# Generated by roxygen2: do not edit by hand

export(align_metadata_seurat)
export(attach_alt_experiments_sce)
export(cli_convert)
export(convert_commands)
export(convert_graph_to_colPair)
export(convert_seurat_to_sce)
export(convert_to_anndata)
export(create_combined_assay)
export(ensure_csparse_matrix)
export(extract_counts_matrix)
export(extract_data)
export(extract_pairs)
export(identify_alt_exps_seurat)
export(preserve_reductions_seurat)
export(process_alt_experiments)
export(process_dimensional_reductions)
export(process_layers)
export(process_main_assay)
export(process_metadata_and_pairwise)
export(process_other_assays)
export(timestamped_cat)
export(update_seurat_object)
import(Matrix)
import(optparse)
importFrom(Matrix,Matrix)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,SelfHits)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(Seurat,"DefaultAssay<-")
importFrom(Seurat,Cells)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,SetAssayData)
importFrom(Seurat,UpdateSeuratObject)
importFrom(Seurat,as.SingleCellExperiment)
importFrom(SeuratObject,Layers)
importFrom(SingleCellExperiment,"altExp<-")
importFrom(SingleCellExperiment,"colPair<-")
importFrom(SingleCellExperiment,"reducedDims<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,altExpNames)
importFrom(SingleCellExperiment,colPairs)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SingleCellExperiment,removeAltExps)
importFrom(SingleCellExperiment,rowPairs)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(anndata,AnnData)
importFrom(anndata,write_h5ad)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(optparse,OptionParser)
importFrom(optparse,make_option)
importFrom(optparse,parse_args)
importFrom(utils,packageVersion)