diff --git a/.github/dependabot.yml b/.github/dependabot.yml index dfd0e308..54876ba5 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -8,3 +8,14 @@ updates: schedule: # Check for updates to GitHub Actions every week interval: "weekly" + + - package-ecosystem: "pip" + directories: + - "/starfish/REQUIREMENTS-STRICT.txt" + - "/requirements/REQUIREMENTS-CI.txt" + - "/requirements/REQUIREMENTS-NAPARI-CI.txt" + - "/requirements/REQUIREMENTS-JUPYTER.txt" + schedule: + interval: "weekly" + # Disable version updates (allows only security updates) + open-pull-requests-limit: 0 diff --git a/requirements/REQUIREMENTS-CI.txt b/requirements/REQUIREMENTS-CI.txt index 4679009c..262f6978 100644 --- a/requirements/REQUIREMENTS-CI.txt +++ b/requirements/REQUIREMENTS-CI.txt @@ -143,7 +143,7 @@ threadpoolctl==3.6.0 tifffile==2024.8.30 tinycss2==1.4.0 tomli==2.2.1 -tornado==6.4.2 +tornado==6.5.1 tqdm==4.67.1 trackpy==0.6.4 traitlets==5.14.3 diff --git a/requirements/REQUIREMENTS-CI.txt.in b/requirements/REQUIREMENTS-CI.txt.in index 152e3c1d..f8da8d98 100644 --- a/requirements/REQUIREMENTS-CI.txt.in +++ b/requirements/REQUIREMENTS-CI.txt.in @@ -1,6 +1,6 @@ # requirements to run CI except for napari # constrain the CI requirements to packages already in REQUIREMENTS-STRICT.txt --c ../starfish/REQUIREMENTS-STRICT.txt +-r ../starfish/REQUIREMENTS-STRICT.txt build flake8 flake8-import-order diff --git a/requirements/REQUIREMENTS-JUPYTER.txt b/requirements/REQUIREMENTS-JUPYTER.txt index 0f77151a..bf295240 100644 --- a/requirements/REQUIREMENTS-JUPYTER.txt +++ b/requirements/REQUIREMENTS-JUPYTER.txt @@ -124,7 +124,7 @@ threadpoolctl==3.6.0 tifffile==2024.8.30 tinycss2==1.4.0 tomli==2.2.1 -tornado==6.4.2 +tornado==6.5.1 tqdm==4.67.1 trackpy==0.6.4 traitlets==5.14.3 diff --git a/requirements/REQUIREMENTS-NAPARI-CI.txt b/requirements/REQUIREMENTS-NAPARI-CI.txt index 9977c882..d58adfb0 100644 --- a/requirements/REQUIREMENTS-NAPARI-CI.txt +++ b/requirements/REQUIREMENTS-NAPARI-CI.txt @@ -143,7 +143,7 @@ tifffile==2024.8.30 tomli==2.2.1 tomli_w==1.2.0 toolz==1.0.0 -tornado==6.4.2 +tornado==6.5.1 tqdm==4.67.1 trackpy==0.6.4 traitlets==5.14.3 diff --git a/requirements/REQUIREMENTS-NAPARI-CI.txt.in b/requirements/REQUIREMENTS-NAPARI-CI.txt.in index 3a667245..af214b9c 100644 --- a/requirements/REQUIREMENTS-NAPARI-CI.txt.in +++ b/requirements/REQUIREMENTS-NAPARI-CI.txt.in @@ -1,6 +1,6 @@ # requirements to run napari and CI for napari # constrain the NAPARI-CI requirements to packages already in REQUIREMENTS-CI.txt --c REQUIREMENTS-CI.txt +-r REQUIREMENTS-CI.txt # napari 0.4.18 made point sizes only isotropic: https://forum.image.sc/t/anisotropic-point-sizes/83388 napari[all]>0.4.17 pytest-qt