From 8a567228f540d4b864bea7892930068285864d24 Mon Sep 17 00:00:00 2001
From: shachafl <66333410+shachafl@users.noreply.github.com>
Date: Mon, 19 May 2025 22:30:21 -0400
Subject: [PATCH 1/4] Update dependabot.yml

Tries to resolve Dependabot error with a constraint ("-c") files ref in requirements files.
---
 .github/dependabot.yml | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index dfd0e308..54876ba5 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -8,3 +8,14 @@ updates:
     schedule:
       # Check for updates to GitHub Actions every week
       interval: "weekly"
+
+  - package-ecosystem: "pip"
+    directories: 
+      - "/starfish/REQUIREMENTS-STRICT.txt"
+      - "/requirements/REQUIREMENTS-CI.txt"
+      - "/requirements/REQUIREMENTS-NAPARI-CI.txt"
+      - "/requirements/REQUIREMENTS-JUPYTER.txt"
+    schedule:
+      interval: "weekly"
+    # Disable version updates (allows only security updates)
+    open-pull-requests-limit: 0

From bbf451f80c657e8af44a6c262aaf897116bf1a75 Mon Sep 17 00:00:00 2001
From: shachafl <66333410+shachafl@users.noreply.github.com>
Date: Mon, 19 May 2025 22:40:12 -0400
Subject: [PATCH 2/4] Update REQUIREMENTS-CI.txt.in

Replaced "-c" with "-r"
---
 requirements/REQUIREMENTS-CI.txt.in | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements/REQUIREMENTS-CI.txt.in b/requirements/REQUIREMENTS-CI.txt.in
index 152e3c1d..f8da8d98 100644
--- a/requirements/REQUIREMENTS-CI.txt.in
+++ b/requirements/REQUIREMENTS-CI.txt.in
@@ -1,6 +1,6 @@
 # requirements to run CI except for napari
 # constrain the CI requirements to packages already in REQUIREMENTS-STRICT.txt
--c ../starfish/REQUIREMENTS-STRICT.txt
+-r ../starfish/REQUIREMENTS-STRICT.txt
 build
 flake8
 flake8-import-order

From cb9ef68c592403320bb9e829f9f8d959d8b7eb42 Mon Sep 17 00:00:00 2001
From: shachafl <66333410+shachafl@users.noreply.github.com>
Date: Mon, 19 May 2025 22:41:17 -0400
Subject: [PATCH 3/4] Update REQUIREMENTS-NAPARI-CI.txt.in

Replaced "-c" with "-r"
---
 requirements/REQUIREMENTS-NAPARI-CI.txt.in | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements/REQUIREMENTS-NAPARI-CI.txt.in b/requirements/REQUIREMENTS-NAPARI-CI.txt.in
index 3a667245..af214b9c 100644
--- a/requirements/REQUIREMENTS-NAPARI-CI.txt.in
+++ b/requirements/REQUIREMENTS-NAPARI-CI.txt.in
@@ -1,6 +1,6 @@
 # requirements to run napari and CI for napari
 # constrain the NAPARI-CI requirements to packages already in REQUIREMENTS-CI.txt
--c REQUIREMENTS-CI.txt
+-r REQUIREMENTS-CI.txt
 # napari 0.4.18 made point sizes only isotropic: https://forum.image.sc/t/anisotropic-point-sizes/83388
 napari[all]>0.4.17
 pytest-qt

From 7ecd91a8e2c2e968fb44a8598384908a95d0dcc8 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 23 May 2025 19:28:47 +0000
Subject: [PATCH 4/4] Bump tornado from 6.4.2 to 6.5.1 in /requirements

Bumps [tornado](https://github.com/tornadoweb/tornado) from 6.4.2 to 6.5.1.
- [Changelog](https://github.com/tornadoweb/tornado/blob/master/docs/releases.rst)
- [Commits](https://github.com/tornadoweb/tornado/compare/v6.4.2...v6.5.1)

---
updated-dependencies:
- dependency-name: tornado
  dependency-version: 6.5.1
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 requirements/REQUIREMENTS-CI.txt        | 2 +-
 requirements/REQUIREMENTS-JUPYTER.txt   | 2 +-
 requirements/REQUIREMENTS-NAPARI-CI.txt | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/requirements/REQUIREMENTS-CI.txt b/requirements/REQUIREMENTS-CI.txt
index 4679009c..262f6978 100644
--- a/requirements/REQUIREMENTS-CI.txt
+++ b/requirements/REQUIREMENTS-CI.txt
@@ -143,7 +143,7 @@ threadpoolctl==3.6.0
 tifffile==2024.8.30
 tinycss2==1.4.0
 tomli==2.2.1
-tornado==6.4.2
+tornado==6.5.1
 tqdm==4.67.1
 trackpy==0.6.4
 traitlets==5.14.3
diff --git a/requirements/REQUIREMENTS-JUPYTER.txt b/requirements/REQUIREMENTS-JUPYTER.txt
index 0f77151a..bf295240 100644
--- a/requirements/REQUIREMENTS-JUPYTER.txt
+++ b/requirements/REQUIREMENTS-JUPYTER.txt
@@ -124,7 +124,7 @@ threadpoolctl==3.6.0
 tifffile==2024.8.30
 tinycss2==1.4.0
 tomli==2.2.1
-tornado==6.4.2
+tornado==6.5.1
 tqdm==4.67.1
 trackpy==0.6.4
 traitlets==5.14.3
diff --git a/requirements/REQUIREMENTS-NAPARI-CI.txt b/requirements/REQUIREMENTS-NAPARI-CI.txt
index 9977c882..d58adfb0 100644
--- a/requirements/REQUIREMENTS-NAPARI-CI.txt
+++ b/requirements/REQUIREMENTS-NAPARI-CI.txt
@@ -143,7 +143,7 @@ tifffile==2024.8.30
 tomli==2.2.1
 tomli_w==1.2.0
 toolz==1.0.0
-tornado==6.4.2
+tornado==6.5.1
 tqdm==4.67.1
 trackpy==0.6.4
 traitlets==5.14.3