v3.5.1

What's Changed

• Refactor web worker into proper source code file by @toloudis in #297
• Bump json5 and css-loader by @dependabot in #298

Full Changelog: v3.5.0...v3.5.1

v3.5.0

What's Changed

• Add first key to path in smoldyn form by @ascibisz in #286
• Fix/workflows by @meganrm in #289
• increase number of pdb atoms for levels of detail by @toloudis in #285
• Bump loader-utils from 1.4.0 to 1.4.2 by @dependabot in #291
• Fix/worker loading by @toloudis in #290
• Feature/dev build by @meganrm in #293
• Bump decode-uri-component from 0.2.0 to 0.2.2 by @dependabot in #295

New Contributors

• @ascibisz made their first contribution in #286

Full Changelog: v3.4.0...v3.5.0

v3.4.0

✨ New Features

• Sphere groups
• Proto live mode

🐛 Bug Fixes and Improvements

• Fixed fiber focus
• Improvements to our PDB and CIF loader: now downloads the biological unit and shows non protein structures
• Fixed the Hide All button in the demo viewer for better debugging
• Prototyping non simularium file loading

Pull requests included in this release

• Fix the fiber focus
• Feature/metaballs by @toloudis in #261
• Bump terser from 5.12.0 to 5.14.2 by @dependabot in #278
• download biological unit from pdb by @meganrm in #277
• Feature/proto live mode by @toloudis in #279
• Feature/improve cif loader by @toloudis in #281
• fix the "Hide All" in the demo viewer by @toloudis in #284
• Feature/UI template by @meganrm in #274

Full Changelog: v3.3.3...v3.4.0

v3.3.2

✨ New Features

• Can display Cubes! 📦
• Camera capture
• Can now load binary trajectory files

🐛 Bug Fixes and Improvements

• Fix the fiber focus

Pull requests included in this release

• fix the sample app build: css file was not being pre built by @toloudis in #236
• correct args passed to eslint by @toloudis in #242
• Bump node-fetch from 2.6.6 to 2.6.7 by @dependabot in #243
• Feature/update three by @toloudis in #244
• Bump follow-redirects from 1.14.7 to 1.14.8 by @dependabot in #246
• fix focus when fiber was clicked by checking for correct type by @toloudis in #250
• Feature/load binary trajectories by @toloudis in #247
• Feature/cam capture by @toloudis in #249
• Feature/refactor viewer from data by @toloudis in #257
• Bump node-forge from 1.2.1 to 1.3.0 by @dependabot in #258
• Bump minimist from 1.2.5 to 1.2.6 by @dependabot in #259
• Feature/cubes by @meganrm in #260
• Feature/export i simularium file by @toloudis in #262

Full Changelog: v3.3.1...v3.3.2

v3.3.1

Full Changelog: v3.3.0...v3.3.1

v3.3.0

What's Changed

🎉 New features

• New headsup controls in the test viewer using Tweakpane instead of dat.gui

🐞 Bug Fixes

• Fixed problems with playing streamed trajectories that don't start at time 0 (e.g., endocytosis)

⛏ Maintenance

• Removed obsolete build tools (Jenkins and Gradle)
• Updated dependencies to remove security vulnerabilities identified by Dependabot

Pull requests included in this release

• remove gradle by @toloudis in #230
• Feature/headsup controls by @toloudis in #232
• Fix/dependabot by @toloudis in #233
• Fix/frame time issues when streamed trajectory doesn't start at t=0 by @schoinh in #235

Full Changelog: v3.2.2...v3.3.0

v3.2.2

What's Changed

🐞 Bug Fix

• Fixed a bug that prevented some v3 PhysiCell trajectories from loading

Pull requests included in this release

• Fix/use "new" to construct a new instance of Color by @schoinh in #227

Full Changelog: v3.2.1...v3.2.2

v3.2.1

What's Changed

🐞 Bug Fix

• The class FrontEndError is now exported from this app so that other apps can use it.

Pull requests included in this release

• Fix/export FrontEndError by @schoinh in #225

Full Changelog: v3.2.0...v3.2.1

v3.2.0

What's Changed

🎉 New features

• The viewer can now throw errors with specific severity levels (error, warning, info)
• A nightly build of the test viewer is now available at https://allen-cell-animated.github.io/simularium-viewer/

🐞 Bug Fix

• Fixed a bug that sometimes rendered splotchy colors for individual agents

⛏ Maintenance

• Error messages are now thrown in a consistent manner -- each error message meant to be displayed to the user in an application using the viewer is thrown as a FrontEndError

Pull requests included in this release

• fix issue with color varying across same agent by @toloudis in #222
• add a nightly build script by @meganrm in #221
• Feature/error levels by @meganrm in #223

Full Changelog: v3.1.0...v3.2.0

v3.1.0

What's Changed

🎉 New features

• Molecular structures hosted by the Protein Databank can be now loaded using an ID.
• mmCIF files are now supported.

⛏ Maintenance

• The unmodified state of the agent is being defined by the data and set to the viewer instead of being added by the website.
• If all the states for an agent group have the same color, the agent group is assigned that color as well.

🐞 Bug Fix

• Display groups of agent states no longer get a color if the states have different colors.

Pull requests included in this release

• add unmodified to displaydata by @meganrm in #216
• Fix/parent color by @meganrm in #213
• load PDB by ID and mmCIF files by @toloudis in #215

Full Changelog: v3.0.4...v3.1.0