diff --git a/README.md b/README.md index 41729d2f..34cd1962 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,12 @@ ## Simularium repositories This repository is part of the Simularium project ([simularium.allencell.org](https://simularium.allencell.org)), which includes repositories: - [simulariumIO](https://github.com/simularium/simulariumio) - Python package that converts simulation outputs to the format consumed by the Simularium viewer website -- [simularium-engine](https://github.com/simularium/simularium-engine) - C++ backend application that interfaces with biological simulation engines and serves simulation data to the front end website +- [octopus](https://github.com/simularium/octopus) - Python application that serves simulation data to the front end website - [simularium-viewer](https://github.com/simularium/simularium-viewer) - NPM package to view Simularium trajectories in 3D - [simularium-website](https://github.com/simularium/simularium-website) - Front end website for the Simularium project, includes the Simularium viewer +## Simularium Project Status +While we are continuing to support Simularium, **active development on new features is currently paused**. As a result, new feature request will not be addressed immediately.
--- @@ -95,6 +97,7 @@ Upload your file to a public Dropbox or Google Drive folder or an AWS S3 bucket, * Smoldyn (http://www.smoldyn.org/) * SpringSaLaD (https://vcell.org/ssalad) * Molecular dynamics trajectories via MDAnalysis (https://www.mdanalysis.org/) + * NERDSS (https://mjohn218.github.io/NERDSS/) * Conversions for data from custom engines can be implemented using the TrajectoryConverter class * Also accepts metrics data for plots to display alongside spatial data @@ -152,6 +155,7 @@ See the Tutorial for the simulation engine you're using for details: * [Smoldyn Tutorial](examples/Tutorial_smoldyn.ipynb) * [SpringSaLaD Tutorial](examples/Tutorial_springsalad.ipynb) * [Molecular Dynamics Tutorial](examples/Tutorial_md.ipynb) +* [NERDSS Tutorial](examples/Tutorial_nerdss.ipynb) An overview for data from ReaDDy: ```python