ninja: build stopped: subcommand failed.

[A-Santana]

Hi everyone! Glad to be here in the new forum!
I'm in the process of compiling SOFA 21.12.00 on Ubuntu 20.04.3 LTS, however, after running ninja I've got an error:

[1291/1722] Building CXX object modules/...reconditioner/JacobiPreconditioner.cpp.o ninja: build stopped: subcommand failed.

Lines before I've got this:

[1289/1722] Linking CXX shared library lib/libSofaSparseSolver.so.22.06.99 FAILED: lib/libSofaSparseSolver.so.22.06.99

Here is the complete message output (between the lines above), where I'm guessing is the trouble:

[1289/1722] Linking CXX shared library lib/libSofaSparseSolver.so.22.06.99
FAILED: lib/libSofaSparseSolver.so.22.06.99 
: && /usr/bin/g++ -fPIC -O3 -DNDEBUG  -Wl,--no-undefined -lc -shared -Wl,-soname,libSofaSparseSolver.so.22.06.99 -o lib/libSofaSparseSolver.so.22.06.99 modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/initSofaSparseSolver.cpp.o modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/AsyncSparseLDLSolver.cpp.o modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/PrecomputedLinearSolver.cpp.o modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/SparseLDLSolver.cpp.o modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/SparseCholeskySolver.cpp.o modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/SparseLUSolver.cpp.o modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/FillReducingOrdering.cpp.o  -Wl,-rpath,/home/asantana/My-SOFA/build/lib::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  lib/libSofaGeneralLinearSolver.so.22.06.99  lib/libmetis.a  lib/libcsparse.a  lib/libSofaBaseLinearSolver.so.22.06.99  lib/libSofa.SimulationCore.so.22.06.99  lib/libSofa.Core.so.22.06.99  lib/libSofa.DefaultType.so.22.06.99  lib/libSofa.LinearAlgebra.so.22.06.99  lib/libSofa.Helper.so.22.06.99  lib/libSofa.Topology.so.22.06.99  lib/libSofa.Geometry.so.22.06.99  lib/libSofa.Type.so.22.06.99  lib/libSofa.Compat.so.22.06.99  lib/libSofa.Component.Compat.so.22.06.99  lib/libSofa.Config.so.22.06.99  -lm && :
/usr/bin/ld: modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/AsyncSparseLDLSolver.cpp.o: en la función `std::future<std::__invoke_result<std::decay<void (sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager<double> >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>::*)()>::type, std::decay<sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager<double> >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>*>::type>::type> std::async<void (sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager<double> >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>::*)(), sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager<double> >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>*>(std::launch, void (sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager<double> >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>::*&&)(), sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager<double> >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>*&&)':
AsyncSparseLDLSolver.cpp:(.text._ZSt5asyncIMN4sofa9component12linearsolver20AsyncSparseLDLSolverINS0_13linearalgebra25CompressedRowSparseMatrixIdNS0_4type6vectorIdNS6_16CPUMemoryManagerIdEEEENS7_IjNS8_IjEEEEEENS4_10FullVectorIdEENS2_15NoThreadManagerEEEFvvEJPSH_EESt6futureINSt15__invoke_resultINSt5decayIT_E4typeEJDpNSN_IT0_E4typeEEE4typeEESt6launchOSO_DpOSR_[_ZSt5asyncIMN4sofa9component12linearsolver20AsyncSparseLDLSolverINS0_13linearalgebra25CompressedRowSparseMatrixIdNS0_4type6vectorIdNS6_16CPUMemoryManagerIdEEEENS7_IjNS8_IjEEEEEENS4_10FullVectorIdEENS2_15NoThreadManagerEEEFvvEJPSH_EESt6futureINSt15__invoke_resultINSt5decayIT_E4typeEJDpNSN_IT0_E4typeEEE4typeEESt6launchOSO_DpOSR_]+0x22e): referencia a `pthread_create' sin definir
/usr/bin/ld: modules/SofaSparseSolver/CMakeFiles/SofaSparseSolver.dir/src/SofaSparseSolver/AsyncSparseLDLSolver.cpp.o: en la función `std::future<std::__invoke_result<std::decay<void (sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>::*)()>::type, std::decay<sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>*>::type>::type> std::async<void (sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>::*)(), sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>*>(std::launch, void (sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>::*&&)(), sofa::component::linearsolver::AsyncSparseLDLSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager<unsigned int> > >, sofa::linearalgebra::FullVector<double>, sofa::component::linearsolver::NoThreadManager>*&&)':
AsyncSparseLDLSolver.cpp:(.text._ZSt5asyncIMN4sofa9component12linearsolver20AsyncSparseLDLSolverINS0_13linearalgebra25CompressedRowSparseMatrixINS0_4type3MatILj3ELj3EdEENS6_6vectorIS8_NS6_16CPUMemoryManagerIS8_EEEENS9_IjNSA_IjEEEEEENS4_10FullVectorIdEENS2_15NoThreadManagerEEEFvvEJPSJ_EESt6futureINSt15__invoke_resultINSt5decayIT_E4typeEJDpNSP_IT0_E4typeEEE4typeEESt6launchOSQ_DpOST_[_ZSt5asyncIMN4sofa9component12linearsolver20AsyncSparseLDLSolverINS0_13linearalgebra25CompressedRowSparseMatrixINS0_4type3MatILj3ELj3EdEENS6_6vectorIS8_NS6_16CPUMemoryManagerIS8_EEEENS9_IjNSA_IjEEEEEENS4_10FullVectorIdEENS2_15NoThreadManagerEEEFvvEJPSJ_EESt6futureINSt15__invoke_resultINSt5decayIT_E4typeEJDpNSP_IT0_E4typeEEE4typeEESt6launchOSQ_DpOST_]+0x22e): referencia a `pthread_create' sin definir
collect2: error: ld returned 1 exit status
[1291/1722] Building CXX object modules/...reconditioner/JacobiPreconditioner.cpp.o
ninja: build stopped: subcommand failed.

I hope you can give me some idea about what's happening.

Thanks in advance!

[fredroy]

Hello @A-Santana ,
I got the same error with the latest Manjaro/gcc this morning, I dont know why but some configurations need to explicitly add pthread when linking (but for example clang on the same system does not need it 🤪).
Anyway, I am in the middle of creating the PR, so your problem should be fixed soon.

[fredroy]

It should be fixed here #2739. If you cannot wait the merge of the PR, you can try to merge the associated branch and see how it goes.

[A-Santana]

Hi @fredroy !

Thanks for support, I´ve seen that your PR has been merged! I´ve to be honest with you, I´m really new in this topics, so, how can I merge/integrate those changes to my local in order to try again the compilation?

[A-Santana]

Hi again!

I've realized that the clone I was using was the following: git clone -b v21.12 https://github.com/sofa-framework/sofa.git sofa/src, so I made a new clone on another folder containing git clone -b master https://github.com/sofa-framework/sofa.git sofa/src

After generating a new Makefile, the compilation seemed to be fine, but almost at the last step ([1721/1728]) I received again the message: ninja: build stopped: subcommand failed: =(

[1721/1728] Building CXX object applications/plugins/SofaMatrix/CMakeFiles/SofaMatrix.dir/src/SofaMatrix/BaseMatrixImageViewerWidget.cpp.o /home/asantana/sofa/src/applications/plugins/SofaMatrix/src/SofaMatrix/BaseMatrixImageViewerWidget.cpp: In member function ‘virtual void sofa::gui::qt::BaseMatrixImageViewerGraphWidget::resizeEvent(QResizeEvent*)’: /home/asantana/sofa/src/applications/plugins/SofaMatrix/src/SofaMatrix/BaseMatrixImageViewerWidget.cpp:105:66: warning: unused parameter ‘resize_event’ [-Wunused-parameter] 105 | void BaseMatrixImageViewerGraphWidget::resizeEvent(QResizeEvent* resize_event) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ ninja: build stopped: subcommand failed.

Previously I got this:

[1719/1728] Linking CXX shared library lib/libSofaPardisoSolver.so.0.1 FAILED: lib/libSofaPardisoSolver.so.0.1

The complete message between this ones is the following:

[1719/1728] Linking CXX shared library lib/libSofaPardisoSolver.so.0.1 FAILED: lib/libSofaPardisoSolver.so.0.1 : && /usr/bin/g++ -fPIC -O3 -DNDEBUG -Wl,--no-undefined -lc -shared -Wl,-soname,libSofaPardisoSolver.so.0.1 -o lib/libSofaPardisoSolver.so.0.1 applications/plugins/SofaPardisoSolver/CMakeFiles/SofaPardisoSolver.dir/SparsePARDISOSolver.cpp.o applications/plugins/SofaPardisoSolver/CMakeFiles/SofaPardisoSolver.dir/initPardisoSolver.cpp.o -L/home/asantana/sofa/src/applications/plugins/SofaPardisoSolver/extlibs -Wl,-rpath,/home/asantana/sofa/src/applications/plugins/SofaPardisoSolver/extlibs:/home/asantana/sofa/build/lib::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: lib/libSofaBase.so.22.06.99 lib/libSofaGeneral.so.22.06.99 lib/libSofaBaseVisual.so.22.06.99 -lgfortran -lblas -llapack -lgomp lib/libSofaEigen2Solver.so.22.06.99 lib/libSofaGeneralAnimationLoop.so.22.06.99 lib/libSofaSimulationCommon.so.22.06.99 lib/libSofaGeneralDeformable.so.22.06.99 lib/libSofaGeneralExplicitOdeSolver.so.22.06.99 lib/libSofa.Component.ODESolver.Forward.so.22.06.99 lib/libSofaGeneralImplicitOdeSolver.so.22.06.99 lib/libSofaGeneralLinearSolver.so.22.06.99 lib/libSofaGeneralRigid.so.22.06.99 lib/libSofaGeneralObjectInteraction.so.22.06.99 lib/libSofaGeneralEngine.so.22.06.99 lib/libSofa.GL.so.22.06.99 /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLEW.so lib/libSofaEngine.so.22.06.99 lib/libSofaGeneralSimpleFem.so.22.06.99 lib/libSofaSimpleFem.so.22.06.99 lib/libSofaGeneralTopology.so.22.06.99 lib/libSofaConstraint.so.22.06.99 lib/libSofaUserInteraction.so.22.06.99 lib/libSofaBoundaryCondition.so.22.06.99 lib/libSofaGeneralMeshCollision.so.22.06.99 lib/libSofaMeshCollision.so.22.06.99 lib/libSofaObjectInteraction.so.22.06.99 lib/libSofaRigid.so.22.06.99 lib/libSofaBaseMechanics.so.22.06.99 lib/libSofaBaseLinearSolver.so.22.06.99 lib/libSofaGeneralVisual.so.22.06.99 lib/libSofa.Component.Visual.so.22.06.99 lib/libSofaGraphComponent.so.22.06.99 lib/libSofaBaseCollision.so.22.06.99 lib/libSofaBaseUtils.so.22.06.99 lib/libSofa.Component.SceneUtility.so.22.06.99 lib/libSofaTopologyMapping.so.22.06.99 lib/libSofa.Component.Topology.Mapping.so.22.06.99 lib/libSofaDeformable.so.22.06.99 lib/libSofaBaseTopology.so.22.06.99 lib/libSofa.Component.Topology.Container.Grid.so.22.06.99 lib/libSofa.Component.Topology.Container.Constant.so.22.06.99 lib/libSofa.Component.Topology.Container.Dynamic.so.22.06.99 lib/libSofaImplicitOdeSolver.so.22.06.99 lib/libSofa.Component.ODESolver.Backward.so.22.06.99 lib/libSofaGeneralLoader.so.22.06.99 lib/libSofa.Component.IO.Mesh.so.22.06.99 /usr/lib/x86_64-linux-gnu/libz.so lib/libSofa.Component.Playback.so.22.06.99 lib/libSofa.SimulationCore.so.22.06.99 lib/libSofa.Core.so.22.06.99 lib/libSofa.DefaultType.so.22.06.99 lib/libSofa.LinearAlgebra.so.22.06.99 lib/libSofa.Helper.so.22.06.99 lib/libSofa.Topology.so.22.06.99 lib/libSofa.Geometry.so.22.06.99 lib/libSofa.Type.so.22.06.99 lib/libSofa.Compat.so.22.06.99 lib/libSofa.Component.Compat.so.22.06.99 lib/libSofa.Config.so.22.06.99 /usr/lib/x86_64-linux-gnu/libz.so -Wl,-rpath-link,/home/asantana/sofa/build/lib && : /usr/bin/ld: applications/plugins/SofaPardisoSolver/CMakeFiles/SofaPardisoSolver.dir/SparsePARDISOSolver.cpp.o: en la función sofa::component::linearsolver::SparsePARDISOSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager > >, sofa::linearalgebra::FullVector >::callPardiso(sofa::component::linearsolver::SparsePARDISOSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager > >, sofa::linearalgebra::FullVector >::SparsePARDISOSolverInvertData*, int, sofa::linearalgebra::FullVector, sofa::linearalgebra::FullVector)':
SparsePARDISOSolver.cpp:(.text.ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixIdNS_4type6vectorIdNS5_16CPUMemoryManagerIdEEEENS6_IjNS7_IjEEEEEENS3_10FullVectorIdEEE11callPardisoEPNSF_29SparsePARDISOSolverInvertDataEiPSE_SI[ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixIdNS_4type6vectorIdNS5_16CPUMemoryManagerIdEEEENS6_IjNS7_IjEEEEEENS3_10FullVectorIdEEE11callPardisoEPNSF_29SparsePARDISOSolverInvertDataEiPSE_SI]+0x1b1): referencia a pardiso_' sin definir /usr/bin/ld: applications/plugins/SofaPardisoSolver/CMakeFiles/SofaPardisoSolver.dir/SparsePARDISOSolver.cpp.o: en la función sofa::component::linearsolver::SparsePARDISOSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager > >, sofa::linearalgebra::FullVector >::callPardiso(sofa::component::linearsolver::SparsePARDISOSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager > >, sofa::linearalgebra::FullVector >::SparsePARDISOSolverInvertData*, int, sofa::linearalgebra::FullVector, sofa::linearalgebra::FullVector)':
SparsePARDISOSolver.cpp:(.text.ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixINS_4type3MatILj3ELj3EdEENS5_6vectorIS7_NS5_16CPUMemoryManagerIS7_EEEENS8_IjNS9_IjEEEEEENS3_10FullVectorIdEEE11callPardisoEPNSH_29SparsePARDISOSolverInvertDataEiPSG_SK[ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixINS_4type3MatILj3ELj3EdEENS5_6vectorIS7_NS5_16CPUMemoryManagerIS7_EEEENS8_IjNS9_IjEEEEEENS3_10FullVectorIdEEE11callPardisoEPNSH_29SparsePARDISOSolverInvertDataEiPSG_SK]+0x1b1): referencia a pardiso_' sin definir /usr/bin/ld: applications/plugins/SofaPardisoSolver/CMakeFiles/SofaPardisoSolver.dir/SparsePARDISOSolver.cpp.o: en la función sofa::component::linearsolver::SparsePARDISOSolver<sofa::linearalgebra::CompressedRowSparseMatrix<sofa::type::Mat<3u, 3u, double>, sofa::type::vector<sofa::type::Mat<3u, 3u, double>, sofa::type::CPUMemoryManager<sofa::type::Mat<3u, 3u, double> > >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager > >, sofa::linearalgebra::FullVector >::SparsePARDISOSolverInvertData::SparsePARDISOSolverInvertData(int, std::ostream&, std::ostream&)':
SparsePARDISOSolver.cpp:(.text.ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixINS_4type3MatILj3ELj3EdEENS5_6vectorIS7_NS5_16CPUMemoryManagerIS7_EEEENS8_IjNS9_IjEEEEEENS3_10FullVectorIdEEE29SparsePARDISOSolverInvertDataC2EiRSoSJ[ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixINS_4type3MatILj3ELj3EdEENS5_6vectorIS7_NS5_16CPUMemoryManagerIS7_EEEENS8_IjNS9_IjEEEEEENS3_10FullVectorIdEEE29SparsePARDISOSolverInvertDataC5EiRSoSJ]+0x1ab): referencia a pardisoinit_' sin definir /usr/bin/ld: applications/plugins/SofaPardisoSolver/CMakeFiles/SofaPardisoSolver.dir/SparsePARDISOSolver.cpp.o: en la función sofa::component::linearsolver::SparsePARDISOSolver<sofa::linearalgebra::CompressedRowSparseMatrix<double, sofa::type::vector<double, sofa::type::CPUMemoryManager >, sofa::type::vector<unsigned int, sofa::type::CPUMemoryManager > >, sofa::linearalgebra::FullVector >::SparsePARDISOSolverInvertData::SparsePARDISOSolverInvertData(int, std::ostream&, std::ostream&)':
SparsePARDISOSolver.cpp:(.text.ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixIdNS_4type6vectorIdNS5_16CPUMemoryManagerIdEEEENS6_IjNS7_IjEEEEEENS3_10FullVectorIdEEE29SparsePARDISOSolverInvertDataC2EiRSoSH[ZN4sofa9component12linearsolver19SparsePARDISOSolverINS_13linearalgebra25CompressedRowSparseMatrixIdNS_4type6vectorIdNS5_16CPUMemoryManagerIdEEEENS6_IjNS7_IjEEEEEENS3_10FullVectorIdEEE29SparsePARDISOSolverInvertDataC5EiRSoSH]+0x1ab): referencia a pardisoinit_' sin definir collect2: error: ld returned 1 exit status [1721/1728] Building CXX object applications/plugins/SofaMatrix/CMakeFiles/SofaMatrix.dir/src/SofaMatrix/BaseMatrixImageViewerWidget.cpp.o /home/asantana/sofa/src/applications/plugins/SofaMatrix/src/SofaMatrix/BaseMatrixImageViewerWidget.cpp: In member function ‘virtual void sofa::gui::qt::BaseMatrixImageViewerGraphWidget::resizeEvent(QResizeEvent*)’: /home/asantana/sofa/src/applications/plugins/SofaMatrix/src/SofaMatrix/BaseMatrixImageViewerWidget.cpp:105:66: warning: unused parameter ‘resize_event’ [-Wunused-parameter] 105 | void BaseMatrixImageViewerGraphWidget::resizeEvent(QResizeEvent* resize_event) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ ninja: build stopped: subcommand failed.

I hope you can help me please!

Best regards.

[hugtalbot]

Congrats @A-Santana were you activating some multi-core compilation options? ccache?

SofaPardisoSolver is a plugin which is not compiled in the binary version of SOFA. Which scene did you run?

Best

Hugo

[A-Santana]

Hi @hugtalbot thanks for reply!

I'm not sure about the multi-core compilation, but what I remember, is that I re-build & and re-configure on CMake turning off the SofaPardisoSolver plugin. Although I also download CCache, I've been compiling every time with Ninja.

Now I'm on the process of running MOR, so I'm not able to run the scenes I would like to... but I was worried about the fact if SofaPardisoSolver is necessary...

Thanks a lot Hugo.

[hugtalbot]

Are you still having this issue @A-Santana ?
This looks like a link issue at compilation, there might be an issue with the CMakeLists.txt of the plugin ..

[A-Santana]

Hi Hugo, this issue is solved!

Just compiling again, but using the Sofa Master branch with Ninja.

Thank you!

[hugtalbot]

Great, thanks for reporting this 👍