Description
Need to fix a FutureWarning depreciation for the plugin parameter in skimage.io.
Steps/Code to Reproduce
Within a Bash shell, make a fresh virtual environment and activate it:
python -m venv .venv3.10
source .venv3.10/bin/activate
Install dependencies and run tests:
make install-dev
make fast-test
Expected Results
No warnings related to the plugin infrastructure in skimage.io and the parameter plugin.
Actual Results
starfish/core/experiment/builder/test/test_inplace.py: 34 warnings
/home/shachafl/Code/shachafl/starfish/starfish/core/experiment/builder/test/test_inplace.py:130: FutureWarning: The plugin infrastructure in `skimage.io` and the parameter `plugin` are deprecated since version 0.25 and will be removed in 0.27 (or later). To avoid this warning, please do not use the parameter `plugin`. Instead, use `imageio` or other I/O packages directly. See also `imsave`.
imsave(os.fspath(path), data, plugin="tifffile")
Description
Need to fix a FutureWarning depreciation for the
pluginparameter inskimage.io.Steps/Code to Reproduce
Within a Bash shell, make a fresh virtual environment and activate it:
Install dependencies and run tests:
Expected Results
No warnings related to the plugin infrastructure in
skimage.ioand the parameterplugin.Actual Results