diff --git a/src/util/arg_parser.rs b/src/util/arg_parser.rs index c6b0984..2a434b3 100644 --- a/src/util/arg_parser.rs +++ b/src/util/arg_parser.rs @@ -1,7 +1,6 @@ use std::path::PathBuf; use clap::{Parser, Subcommand}; use crate::util::arg_parser::Commands::*; - #[derive(Parser)] #[clap(disable_version_flag = true, arg_required_else_help = true)] pub struct ClapArgs { @@ -448,7 +447,6 @@ pub struct Args { pub genetree_realign: Option, pub genetree_aligner: Option, pub genetree_aligner_options: Option>, - pub genetree_threads: Option, } fn own(path: &PathBuf) -> String { path.clone().to_string_lossy().into_owned() } impl Args { @@ -670,9 +668,6 @@ impl Args { let genetree_threshold = match &args.command { Some(GeneTree { threshold, .. }) => Some(*threshold), _ => None, }; - let genetree_threads = match &args.command { - Some(GeneTree { threads, .. }) => Some(*threads), _ => None, - }; Args { command: args.command, version: args.version, threads, verbosity, @@ -681,7 +676,7 @@ impl Args { search_input, search_target, search_output, search_tmp, search_keep_aln_db, search_search_options, cluster_input, cluster_output, cluster_tmp, cluster_keep_cluster_db, cluster_cluster_options, tree_db, tree_input, tree_output, tree_aligner, tree_tree_builder, tree_aligner_options, tree_tree_options, tree_threshold, - genetree_input, genetree_names, genetree_tree_builder, genetree_tree_options, genetree_realign, genetree_aligner, genetree_aligner_options, genetree_threshold, genetree_threads, + genetree_input, genetree_names, genetree_tree_builder, genetree_tree_options, genetree_realign, genetree_aligner, genetree_aligner_options, genetree_threshold, } } } \ No newline at end of file