Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

scrna UI improvements #2523

Open
10 of 12 tasks
xzhou82 opened this issue Dec 16, 2024 · 2 comments
Open
10 of 12 tasks

scrna UI improvements #2523

xzhou82 opened this issue Dec 16, 2024 · 2 comments
Assignees

Comments

@xzhou82
Copy link
Collaborator

xzhou82 commented Dec 16, 2024

  • when the plot is launched in gdc it doesn't show sandbox. may take sample table out of nav toggle and show it above the plot
  • show not show option Show no expression when not overlaying gene exp. since a tooltip is added to this option with full name, can rename to Show not expressed
  • when two plots are shown, show zoom icons per plot. when just one plot the icons are aligned with plot
  • cell type legend click to show menu options: Hide/Show only/change color
  • at navigation, remove Clusters from the tabs, since the colorBy is now shown for each plot. if colorBy is single choice, show as text label but not dropdown
  • nav toggle tab name as Gene Expression, Differential Expression
  • in GFF, on loading gene exp data, somehow shows two loading circles
  • menu Sample size change to Dot Size
  • increase default dot size to 0.02
  • on gene exp overlay, by default use 95 percentile and let user customize by ColorScale
  • label is "Open Violin" per Cluster (do not show drop down for Cluster since there's just one term; if there are multiple terms, show dropdown)
  • when overlaying gene exp, should show <Gene> expression label on top of colorscale for user to understand
@xzhou82 xzhou82 changed the title scrna gdc issue scrna UI improvements Dec 19, 2024
@airenzp
Copy link
Collaborator

airenzp commented Dec 19, 2024

0.02 makes the dots too big and covers other dots, see:
Screenshot 2024-12-19 at 11 20 05 AM

Used 0.008 which is better than before, maybe we could increase to 0.01
Screenshot 2024-12-19 at 11 41 31 AM

@airenzp airenzp mentioned this issue Jan 29, 2025
3 tasks
@airenzp
Copy link
Collaborator

airenzp commented Jan 29, 2025

I need help to see the two loading circles. Please provide example

@airenzp airenzp mentioned this issue Jan 31, 2025
3 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants