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ALL-pharma does not support gene variant term #2609

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karishma-gangwani opened this issue Jan 15, 2025 · 1 comment
Open

ALL-pharma does not support gene variant term #2609

karishma-gangwani opened this issue Jan 15, 2025 · 1 comment
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@karishma-gangwani
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karishma-gangwani commented Jan 15, 2025

all-pharma does not have gene mutation data so using geneset edit UI breaks because there is no geneVariant term support. Is it possible to restructure this to support gene expression data (which is available) through the same UI? say user selects msigdb gene set but to load gene expression rows below LC50 rows? no clustering involved through this. simply loads normalized gene counts through the geneset edit ui.

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@xzhou82
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xzhou82 commented Jan 17, 2025

geneset edit ui is okay. the problem is the matrix gene button design. it always shows and assumes it will always be geneVariant type

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