1_Software_Environment.ipynb

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    "# Install Required Software with Conda\n",
    "\n",
    "*Author: Alex Lewandowski; Alaska Satellite Facility*\n",
    "\n",
    "Installs the `opensarlab_mintpy_recipe_book` conda environment, which is used by all other notebooks in this Jupyter Book.\n",
    "\n",
    "---\n",
    "\n",
    "<div class=\"alert alert-info\" style=\"display: flex; align-items: center; font-family: 'Times New Roman', Times, serif; background-color: #d1ecf1;\">\n",
    "  <div style=\"display: flex; align-items: center; width: 10%;\">\n",
    "    <a href=\"https://github.com/ASFOpenSARlab/opensarlab_MintPy_Recipe_Book/issues\">\n",
    "      <img src=\"github_issues.png\" alt=\"GitHub logo over the word Issues\" style=\"width: 100%;\">\n",
    "    </a>\n",
    "  </div>\n",
    "  <div style=\"width: 95%;\">\n",
    "    <b>Did you find a bug? Do you have a feature request?</b>\n",
    "    <br/>\n",
    "    Explore GitHub Issues on this Jupyter Book's GitHub repository. Find solutions, add to the discussion, or start a new bug report or feature request: <a href=\"https://github.com/ASFOpenSARlab/opensarlab_MintPy_Recipe_Book/issues\">opensarlab_MintPy_Recipe_Book Issues</a>\n",
    "  </div>\n",
    "</div>\n",
    "\n",
    "<div class=\"alert alert-info\" style=\"display: flex; align-items: center; justify-content: space-between; font-family: 'Times New Roman', Times, serif; background-color: #d1ecf1;\">\n",
    "  <div style=\"display: flex; align-items: center; width: 10%; margin-right: 10px;\">\n",
    "    <a href=\"mailto:uso@asf.alaska.edu\">\n",
    "      <img src=\"ASF_support_logo.png\" alt=\"ASF logo\" style=\"width: 100%\">\n",
    "    </a>\n",
    "  </div>\n",
    "  <div style=\"width: 95%;\">\n",
    "    <b>Have a question related to SAR, ASF data access, or performing SBAS time series analyses with MintPy?</b>\n",
    "    <br/>\n",
    "    Contact ASF User Support: <a href=\"mailto:uso@asf.alaska.edu\">uso@asf.alaska.edu</a>\n",
    "  </div>\n",
    "</div>\n",
    "\n",
    "---\n",
    "\n",
    "## 0. Import Required Software"
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   "source": [
    "from pathlib import Path\n",
    "import yaml"
   ]
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    "---\n",
    "## 1. Build the `opensarlab_mintpy_recipe_book` Conda Environment\n",
    "\n",
    "*Note: We use a conda environment config with all packages pinned for stability: `environment_locked.yaml'*\n",
    "\n",
    "*There is an unpinned `environment.yaml` provided, but it may not remain stable with dependency updates, which can occur any time*"
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    "yaml_name = \"environment_locked.yaml\"\n",
    "\n",
    "# uncomment to build the unlocked version of the environment\n",
    "# yaml_name = \"environment.yaml\"\n",
    "\n",
    "conda_yaml_pth = list(Path.cwd().glob(yaml_name))[0]\n",
    "with open(conda_yaml_pth, 'r') as f:\n",
    "    try:\n",
    "        env = yaml.safe_load(f)\n",
    "        env_name = env['name']\n",
    "    except yaml.YAMLError:\n",
    "        raise\n",
    "print(f'environment_locked.yaml path: {conda_yaml_pth}')\n",
    "print(f'environment name: {env_name}')"
   ]
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    "# If running outside of OpenSARLab, update conda_prefix \n",
    "# to the path of your system's conda envs directory\n",
    "conda_prefix = Path.home()/f\".local/envs/{env_name}\"\n",
    "\n",
    "# Create the environment\n",
    "!mamba env create -f {conda_yaml_pth} --prefix {conda_prefix} --no-default-packages -q --force\n",
    "\n",
    "# Run the script to install ARIA-Tools\n",
    "!source \"opensarlab_mintpy_recipe_book_env.sh\" {str(conda_prefix.parents[1])}\n",
    "\n",
    "!{conda_prefix}/bin/python -m ipykernel install --prefix {conda_prefix} --name {env_name}"
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