Early-Sepsis-Detection-Project/pyproject.toml at master · sundar139/Early-Sepsis-Detection-Project · GitHub

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[build-system]
requires = ["hatchling>=1.25.0"]
build-backend = "hatchling.build"

[project]
name = "early-sepsis-detection"
version = "0.1.0"
description = "Production-style machine learning scaffold for early sepsis detection."
readme = "README.md"
requires-python = ">=3.12,<3.14"
license = { text = "MIT" }
authors = [{ name = "Early Sepsis Team" }]
dependencies = [
  "pandas>=2.2.0",
  "numpy>=1.26.0",
  "pyarrow>=16.0.0",
  "scikit-learn>=1.5.0",
  "torch>=2.4.0",
  "lightning>=2.3.0",
  "hydra-core>=1.3.2",
  "fastapi>=0.115.0",
  "uvicorn[standard]>=0.30.0",
  "pydantic>=2.8.0",
  "pydantic-settings>=2.3.4",
  "mlflow>=2.14.0",
  "prefect>=2.19.0",
  "optuna>=3.6.0",
  "streamlit>=1.37.0",
  "httpx>=0.27.0",
  "joblib>=1.4.0",
  "python-dotenv>=1.0.1"
]

[project.optional-dependencies]
dev = [
  "pytest>=8.2.0",
  "ruff>=0.6.0",
  "mypy>=1.10.0"
]

[tool.hatch.build.targets.wheel]
packages = ["src/early_sepsis"]

[tool.pytest.ini_options]
minversion = "7.4"
testpaths = ["tests"]
pythonpath = ["src"]

[tool.ruff]
target-version = "py312"
line-length = 100
src = ["src", "tests", "scripts"]

[tool.ruff.lint]
select = ["E", "F", "I", "UP", "B", "SIM", "RUF"]

[tool.mypy]
python_version = "3.12"
mypy_path = ["src"]
packages = ["early_sepsis"]
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
no_implicit_optional = true
warn_unused_ignores = true
warn_redundant_casts = true
warn_unused_configs = true
ignore_missing_imports = true