operator.json

{
    "name": "Spatial Count Operator",
    "description": "Counts the frequency of neighbour phenotypic clusters per cell (spatial count).",
    "tags": ["spatial","scimap","neighbours"],
    "authors": ["tercen"],
    "urls": ["https://github.com/tercen/spatialcount_operator"],
    "container":"ghcr.io/tercen/spatialcount_operator:0.1.3",
    "properties": [
        {
            "kind": "EnumeratedProperty",
            "isSingleSelection": true,
            "name": "method",
            "defaultValue": "radius",
            "values": ["radius", "knn"],
            "description": "Neighbourhood method: radius or knn"
        },
        {
            "kind": "DoubleProperty",
            "name": "radius",
            "defaultValue": 80.0,
            "description": "Radius (in same units as X/Y) used for radius-based neighbourhoods"
        },
        {
            "kind": "DoubleProperty",
            "name": "knn",
            "defaultValue": 10,
            "description": "Number of neighbours for knn-based neighbourhoods"
        },
        {
            "kind": "DoubleProperty",
            "name": "n_clusters",
            "defaultValue": 8,
            "description": "Number of neighbourhood clusters for k-means clustering"
        }
    ]
}