diff --git a/revdep/README.md b/revdep/README.md index e69de29bb2..de14379b91 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -0,0 +1,388 @@ +# Revdeps + +## Failed to check (22) + +|package |version |error |warning |note | +|:--------------------|:-------|:------|:-------|:----| +|[bartMan](failures.md#bartman)|0.1.1 |__+1__ | | | +|bayesdfa |1.3.4 |1 | | | +|ctsem |3.10.2 |1 | | | +|EcoEnsemble |1.1.2 |1 | | | +|fio |0.1.6 |1 | | | +|[GGally](failures.md#ggally)|2.2.1 |__+1__ | | | +|[ggmosaic](failures.md#ggmosaic)|0.3.3 |__+1__ | |-1 | +|[ggtern](failures.md#ggtern)|3.5.0 |__+1__ | |1 -1 | +|[inventorize](failures.md#inventorize)|1.1.1 |__+1__ | | | +|metabolic |? | | | | +|multinma |0.8.0 |1 | | | +|OpenMx |2.22.6 |1 | | | +|[PieGlyph](failures.md#pieglyph)|1.0.0 |__+1__ | | | +|rmsb |1.1-2 |1 | | | +|rshift |3.1.2 |1 | | | +|RSP |0.4 |1 | | | +|rstanarm |2.32.1 |1 | | | +|StatTeacherAssistant |? | | | | +|streamDAG |? | | | | +|TestAnaAPP |1.1.2 |1 | | | +|[tidydr](failures.md#tidydr)|0.0.5 |__+1__ | | | +|TriDimRegression |1.0.2 |1 | | | + +## New problems (354) + +|package |version |error |warning |note | +|:----------------------|:----------|:------|:-------|:--------| +|[actxps](problems.md#actxps)|1.6.0 |__+1__ | | | +|[adklakedata](problems.md#adklakedata)|0.6.1 |__+1__ | |1 | +|[adw](problems.md#adw) |0.4.0 |__+2__ | | | +|[AeRobiology](problems.md#aerobiology)|2.0.1 |__+1__ | | | +|[afex](problems.md#afex)|1.4-1 |__+1__ | | | +|[AgroR](problems.md#agror)|1.3.6 |__+1__ | | | +|[alookr](problems.md#alookr)|0.3.9 |__+1__ | | | +|[AmpliconDuo](problems.md#ampliconduo)|1.1.1 |__+1__ | |1 | +|[AnalysisLin](problems.md#analysislin)|0.1.2 |__+1__ | | | +|[animbook](problems.md#animbook)|1.0.0 |__+1__ | | | +|[ANN2](problems.md#ann2)|2.3.4 |__+1__ | |3 | +|[APackOfTheClones](problems.md#apackoftheclones)|1.2.4 |__+3__ |1 |1 | +|[APCtools](problems.md#apctools)|1.0.4 |__+3__ | | | +|[applicable](problems.md#applicable)|0.1.1 |__+1__ | | | +|[arulesViz](problems.md#arulesviz)|1.5.3 |__+2__ | | | +|[autocogs](problems.md#autocogs)|0.1.4 |__+1__ | |1 | +|[autoplotly](problems.md#autoplotly)|0.1.4 |__+2__ | | | +|[bakeoff](problems.md#bakeoff)|0.2.0 |__+1__ | |1 | +|[bayesAB](problems.md#bayesab)|1.1.3 |__+1__ | |1 | +|[BayesERtools](problems.md#bayesertools)|0.2.1 |__+1__ | | | +|[BayesianReasoning](problems.md#bayesianreasoning)|0.4.2 |__+1__ | | | +|[BayesMallows](problems.md#bayesmallows)|2.2.3 |__+1__ | |1 | +|[BayesMultiMode](problems.md#bayesmultimode)|0.7.3 | |__+1__ |1 | +|[bayesplot](problems.md#bayesplot)|1.12.0 |__+1__ | |1 | +|[BCClong](problems.md#bcclong)|1.0.3 |__+1__ | |1 | +|[BCEA](problems.md#bcea)|2.4.7 |__+2__ | | | +|[biclustermd](problems.md#biclustermd)|0.2.3 |__+1__ | |1 | +|[BIGL](problems.md#bigl)|1.9.3 |__+1__ | | | +|[BiVariAn](problems.md#bivarian)|1.0.1 |__+2__ | | | +|[boxly](problems.md#boxly)|0.1.1 |__+1__ | | | +|[brolgar](problems.md#brolgar)|1.0.1 |__+2__ | | | +|[bullseye](problems.md#bullseye)|1.0.0 |__+2__ | | | +|[canvasXpress](problems.md#canvasxpress)|1.56.1 |__+1__ | | | +|[cartograflow](problems.md#cartograflow)|1.0.5 |__+1__ | | | +|[cats](problems.md#cats)|1.0.2 |__+1__ | |1 | +|[centerline](problems.md#centerline)|0.2.2 |__+2__ | | | +|[Certara.Xpose.NLME](problems.md#certaraxposenlme)|2.0.2 |__+1__ | | | +|[cheem](problems.md#cheem)|0.4.0.0 |__+1__ | | | +|[choroplethr](problems.md#choroplethr)|4.0.0 |__+1__ | |1 | +|[chronicle](problems.md#chronicle)|0.3 |__+2__ | |1 | +|[classmap](problems.md#classmap)|1.2.4 |__+1__ | |1 | +|[clinDataReview](problems.md#clindatareview)|1.6.2 |__+3__ | |1 | +|[clinUtils](problems.md#clinutils)|0.2.0 |__+1__ | |1 | +|[clockSim](problems.md#clocksim)|0.1.2 | |__+1__ | | +|[clustcurv](problems.md#clustcurv)|2.0.2 |__+1__ | | | +|[clustTMB](problems.md#clusttmb)|0.1.0 |__+1__ | |1 | +|[cnmap](problems.md#cnmap)|0.1.0 |__+2__ | | | +|[cocktailApp](problems.md#cocktailapp)|0.2.3 | |__+1__ |1 | +|[coda.plot](problems.md#codaplot)|0.1.9 |__+1__ |__+1__ | | +|[cogmapr](problems.md#cogmapr)|0.9.3 |__+1__ | | | +|[CohortPlat](problems.md#cohortplat)|1.0.5 |__+2__ | | | +|[colorrepel](problems.md#colorrepel)|0.4.1 |__+1__ | | | +|[contsurvplot](problems.md#contsurvplot)|0.2.1 |__+1__ | | | +|[CoreMicrobiomeR](problems.md#coremicrobiomer)|0.1.0 |__+1__ | | | +|[correlationfunnel](problems.md#correlationfunnel)|0.2.0 |__+1__ | |1 | +|[corrViz](problems.md#corrviz)|0.1.0 |__+2__ | |1 | +|[CoSMoS](problems.md#cosmos)|2.1.0 |__+1__ | | | +|[countfitteR](problems.md#countfitter)|1.4 |__+1__ | |1 | +|[covidcast](problems.md#covidcast)|0.5.2 |__+2__ | |1 | +|[crmPack](problems.md#crmpack)|1.0.6 |__+1__ |-1 | | +|[ctrialsgov](problems.md#ctrialsgov)|0.2.5 |__+1__ | |1 | +|[cubble](problems.md#cubble)|1.0.0 |__+1__ | |1 | +|[cvms](problems.md#cvms)|1.7.0 |__+1__ | | | +|[cylcop](problems.md#cylcop)|0.2.0 |__+1__ | |1 | +|[cystiSim](problems.md#cystisim)|0.1.0 |__+1__ | |1 | +|[D2MCS](problems.md#d2mcs)|1.0.1 |__+1__ | | | +|[daiquiri](problems.md#daiquiri)|1.1.1 |__+2__ | | | +|[DAISIEprep](problems.md#daisieprep)|1.0.0 |__+1__ | | | +|[dampack](problems.md#dampack)|1.0.2.1000 |__+3__ | |1 | +|[deeptime](problems.md#deeptime)|2.1.0 |__+2__ | | | +|[Dforest](problems.md#dforest)|0.4.2 |__+1__ | | | +|[DImodelsVis](problems.md#dimodelsvis)|1.0.1 |__+2__ | | | +|[directlabels](problems.md#directlabels)|2024.1.21 |__+1__ | | | +|[distributions3](problems.md#distributions3)|0.2.2 |__+1__ | | | +|[dittoViz](problems.md#dittoviz)|1.0.3 |__+2__ | | | +|[dotsViolin](problems.md#dotsviolin)|0.0.1 |__+1__ | |1 | +|[duke](problems.md#duke)|0.0.3 |__+2__ | | | +|[easysurv](problems.md#easysurv)|2.0.1 |__+2__ | | | +|[EbayesThresh](problems.md#ebayesthresh)|1.4-12 |__+1__ | | | +|[ecocbo](problems.md#ecocbo)|0.12.0 |__+3__ | | | +|[ecolRxC](problems.md#ecolrxc)|0.1.1-10 |__+1__ | |1 | +|[EGM](problems.md#egm) |0.1.0 |__+1__ | | | +|[eiCircles](problems.md#eicircles)|0.0.1-12 |__+1__ | | | +|[eks](problems.md#eks) |1.1.0 |__+2__ | | | +|[enrichR](problems.md#enrichr)|3.4 |__+1__ | | | +|[epiCleanr](problems.md#epicleanr)|0.2.0 |__+1__ | |1 | +|[epiphy](problems.md#epiphy)|0.5.0 |__+1__ | | | +|[EQUALSTATS](problems.md#equalstats)|0.5.0 |__+1__ | |1 | +|[equatiomatic](problems.md#equatiomatic)|0.3.6 |__+1__ | | | +|[errors](problems.md#errors)|0.4.3 |__+2__ | | | +|[eventstudyr](problems.md#eventstudyr)|1.1.3 |__+1__ | | | +|[explainer](problems.md#explainer)|1.0.2 |__+1__ | |1 | +|[ez](problems.md#ez) |4.4-0 |__+1__ | |1 | +|[ezEDA](problems.md#ezeda)|0.1.1 |__+1__ | | | +|[fabletools](problems.md#fabletools)|0.5.0 |__+1__ | | | +|[fairmodels](problems.md#fairmodels)|1.2.1 |__+1__ | |1 | +|[FARS](problems.md#fars)|0.2.0 |__+1__ | | | +|[faux](problems.md#faux)|1.2.2 |__+2__ | | | +|[fdANOVA](problems.md#fdanova)|0.1.2 |__+1__ | | | +|[feasts](problems.md#feasts)|0.4.1 |__+1__ | | | +|[fgeo.plot](problems.md#fgeoplot)|1.1.11 |__+2__ | | | +|[fitdistrplus](problems.md#fitdistrplus)|1.2-2 |__+3__ | | | +|[flipr](problems.md#flipr)|0.3.3 |__+1__ | |1 | +|[foqat](problems.md#foqat)|2.0.8.2 |__+1__ | | | +|[forestPSD](problems.md#forestpsd)|1.0.0 |__+1__ | |1 | +|[frailtyEM](problems.md#frailtyem)|1.0.1 |__+1__ |1 |2 | +|[func2vis](problems.md#func2vis)|1.0-3 |__+1__ | | | +|[gapminder](problems.md#gapminder)|1.0.0 |__+1__ | | | +|[GCalignR](problems.md#gcalignr)|1.0.7 |__+3__ | | | +|[geneSLOPE](problems.md#geneslope)|0.38.2 | |__+1__ | | +|[geoheatmap](problems.md#geoheatmap)|0.1.0 |__+1__ | | | +|[geomtextpath](problems.md#geomtextpath)|0.1.5 |__+2__ | | | +|[gg1d](problems.md#gg1d)|0.1.0 |__+2__ | | | +|[ggalign](problems.md#ggalign)|1.0.2 | |__+1__ |2 | +|[gganimate](problems.md#gganimate)|1.0.9 |__+2__ | | | +|[ggborderline](problems.md#ggborderline)|0.2.0 |__+1__ | | | +|[ggcorset](problems.md#ggcorset)|0.5.0 |__+1__ | | | +|[ggdark](problems.md#ggdark)|0.2.1 |__+2__ | |1 | +|[ggdemetra](problems.md#ggdemetra)|0.2.8 | |__+1__ | | +|[ggDoubleHeat](problems.md#ggdoubleheat)|0.1.2 |__+1__ | | | +|[ggEDA](problems.md#ggeda)|0.1.0 |__+2__ | | | +|[ggedit](problems.md#ggedit)|0.4.1 |__+1__ | | | +|[ggenealogy](problems.md#ggenealogy)|1.0.3 |__+2__ |-1 |1 | +|[ggfixest](problems.md#ggfixest)|0.3.0 |__+1__ | | | +|[ggfocus](problems.md#ggfocus)|1.0.0 |__+1__ | |1 | +|[ggfootball](problems.md#ggfootball)|0.2.1 |__+1__ | | | +|[ggforce](problems.md#ggforce)|0.4.2 |__+1__ | |1 | +|[ggformula](problems.md#ggformula)|0.12.0 | |__+1__ |1 | +|[ggfortify](problems.md#ggfortify)|0.4.17 |__+1__ | | | +|[ggfun](problems.md#ggfun)|0.1.8 |__+1__ | | | +|[gggenomes](problems.md#gggenomes)|1.0.1 |__+1__ | | | +|[ggh4x](problems.md#ggh4x)|0.3.0 |__+3__ | | | +|[gghalves](problems.md#gghalves)|0.1.4 |__+2__ | |1 | +|[gghighlight](problems.md#gghighlight)|0.4.1 |__+3__ | | | +|[gghourglass](problems.md#gghourglass)|0.0.2 |__+2__ | | | +|[ggiraph](problems.md#ggiraph)|0.8.13 |__+2__ | |1 | +|[ggiraphExtra](problems.md#ggiraphextra)|0.3.0 |__+2__ | | | +|[gglgbtq](problems.md#gglgbtq)|0.2.0 |__+2__ | | | +|[ggmap](problems.md#ggmap)|4.0.1 | |__+1__ |1 | +|[ggmice](problems.md#ggmice)|0.1.0 |__+1__ | | | +|[ggmulti](problems.md#ggmulti)|1.0.7 |__+3__ | | | +|[ggnewscale](problems.md#ggnewscale)|0.5.1 |__+1__ | | | +|[ggpackets](problems.md#ggpackets)|0.2.1 |__+2__ | | | +|[ggparallel](problems.md#ggparallel)|0.4.0 |__+1__ | | | +|[ggparty](problems.md#ggparty)|1.0.0 |__+1__ | |2 | +|[ggplot2.utils](problems.md#ggplot2utils)|0.3.2 |__+1__ | | | +|[ggpointdensity](problems.md#ggpointdensity)|0.2.0 |__+1__ | | | +|[ggpol](problems.md#ggpol)|0.0.7 |__+1__ | |2 | +|[ggpp](problems.md#ggpp)|0.5.8-1 |__+2__ | | | +|[ggpubr](problems.md#ggpubr)|0.6.0 |__+1__ | | | +|[ggraph](problems.md#ggraph)|2.2.1 |__+2__ | |1 | +|[ggredist](problems.md#ggredist)|0.0.2 |__+1__ | | | +|[ggResidpanel](problems.md#ggresidpanel)|0.3.0 |__+3__ | | | +|[ggRtsy](problems.md#ggrtsy)|0.1.0 |__+2__ | |1 | +|[ggseqplot](problems.md#ggseqplot)|0.8.6 |__+3__ | | | +|[ggside](problems.md#ggside)|0.3.1 |__+3__ |__+1__ |__+1__ | +|[ggswissmaps](problems.md#ggswissmaps)|0.1.1 | |__+1__ |__+1__ | +|[ggTimeSeries](problems.md#ggtimeseries)|1.0.2 |__+2__ | | | +|[ggVennDiagram](problems.md#ggvenndiagram)|1.5.2 |__+1__ | |1 | +|[gprofiler2](problems.md#gprofiler2)|0.2.3 |__+2__ | | | +|[grafify](problems.md#grafify)|5.0.0.1 |__+1__ | |2 | +|[Greymodels](problems.md#greymodels)|2.0.1 |__+1__ | | | +|[hatchR](problems.md#hatchr)|0.3.2 |__+1__ | |1 | +|[healthyR](problems.md#healthyr)|0.2.2 |__+1__ | |1 | +|[healthyR.ai](problems.md#healthyrai)|0.1.1 |__+2__ | | | +|[healthyR.ts](problems.md#healthyrts)|0.3.1 |__+2__ | |1 | +|[heatmaply](problems.md#heatmaply)|1.5.0 |__+2__ | |2 | +|[hesim](problems.md#hesim)|0.5.5 |__+1__ | |1 | +|[hmsidwR](problems.md#hmsidwr)|1.1.2 |__+1__ | |2 | +|[HVT](problems.md#hvt) |25.2.3 |__+1__ | | | +|[hypsoLoop](problems.md#hypsoloop)|0.2.0 | |__+1__ | | +|[ibdsim2](problems.md#ibdsim2)|2.2.0 |__+1__ | | | +|[ichimoku](problems.md#ichimoku)|1.5.6 |__+1__ | | | +|[implicitMeasures](problems.md#implicitmeasures)|0.2.1 |__+2__ | | | +|[infer](problems.md#infer)|1.0.8 |__+1__ | | | +|[inferCSN](problems.md#infercsn)|1.1.7 |__+1__ | |1 | +|[injurytools](problems.md#injurytools)|1.0.3 |__+1__ | | | +|[inTextSummaryTable](problems.md#intextsummarytable)|3.3.3 |__+2__ | |1 | +|[iNZightTS](problems.md#inzightts)|2.0.0 |__+1__ | |1 | +|[IRon](problems.md#iron)|0.1.4 |__+1__ | |1 | +|[karel](problems.md#karel)|0.1.1 |__+2__ | |1 | +|[kDGLM](problems.md#kdglm)|1.2.7 |__+2__ | |1 | +|[khroma](problems.md#khroma)|1.16.0 |__+1__ | | | +|[L2E](problems.md#l2e) |2.0 |__+1__ | |1 | +|[lans2r](problems.md#lans2r)|1.2.0 |__+2__ | | | +|[latentcor](problems.md#latentcor)|2.0.1 |__+1__ | |1 | +|[latrend](problems.md#latrend)|1.6.1 |__+2__ | | | +|[lcars](problems.md#lcars)|0.4.0 |__+1__ | | | +|[legendry](problems.md#legendry)|0.2.1 |__+2__ | | | +|[lemon](problems.md#lemon)|0.5.0 |__+3__ | | | +|[lfproQC](problems.md#lfproqc)|1.4.0 |__+2__ | | | +|[LMoFit](problems.md#lmofit)|0.1.7 |__+1__ | |1 | +|[lnmixsurv](problems.md#lnmixsurv)|3.1.6 |__+2__ | |4 | +|[LorenzRegression](problems.md#lorenzregression)|2.1.0 |__+1__ | | | +|[lpdensity](problems.md#lpdensity)|2.5 |__+1__ | | | +|[lphom](problems.md#lphom)|0.3.5-6 |__+1__ | | | +|[lspartition](problems.md#lspartition)|0.5 |__+1__ | | | +|[manynet](problems.md#manynet)|1.3.2 | | |2 __+1__ | +|[mapindia](problems.md#mapindia)|1.0.1 |__+1__ | | | +|[marquee](problems.md#marquee)|1.0.0 |__+1__ | |1 | +|[mcStats](problems.md#mcstats)|0.1.2 |__+1__ | |1 | +|[MendelianRandomization](problems.md#mendelianrandomization)|0.10.0 |__+1__ | |1 | +|[MetAlyzer](problems.md#metalyzer)|1.1.0 |__+1__ | | | +|[MetaNet](problems.md#metanet)|0.2.5 |__+1__ | | | +|[metaquant](problems.md#metaquant)|0.1.1 |__+1__ | | | +|[MetBrewer](problems.md#metbrewer)|0.2.0 |__+1__ | | | +|[metR](problems.md#metr)|0.18.1 |__+3__ | |1 | +|[mgcViz](problems.md#mgcviz)|0.2.0 |__+1__ | | | +|[MIC](problems.md#mic) |1.0.2 |__+1__ | | | +|[migraph](problems.md#migraph)|1.4.5 |__+1__ | | | +|[mikropml](problems.md#mikropml)|1.6.1 |__+1__ | |1 | +|[MiMIR](problems.md#mimir)|1.5 |__+1__ | | | +|[miRetrieve](problems.md#miretrieve)|1.3.4 |__+1__ | | | +|[MiscMetabar](problems.md#miscmetabar)|0.14.2 |__+1__ | |1 | +|[misspi](problems.md#misspi)|0.1.0 |__+1__ | | | +|[misty](problems.md#misty)|0.7.1 |__+1__ | |1 | +|[mizer](problems.md#mizer)|2.5.3 |__+1__ | |1 | +|[MKpower](problems.md#mkpower)|1.0 |__+1__ | | | +|[modeltime.resample](problems.md#modeltimeresample)|0.2.3 |__+1__ | |1 | +|[modgo](problems.md#modgo)|1.0.1 |__+2__ | | | +|[mpactr](problems.md#mpactr)|0.2.1 |__+1__ | |1 | +|[MPTmultiverse](problems.md#mptmultiverse)|0.4-2 |__+2__ | |2 | +|[MRZero](problems.md#mrzero)|0.2.0 |__+1__ | | | +|[mstate](problems.md#mstate)|0.3.3 |__+1__ |1 | | +|[MultiTraits](problems.md#multitraits)|0.5.0 |__+2__ |__+1__ | | +|[mvdalab](problems.md#mvdalab)|1.7 |__+1__ | | | +|[NatParksPalettes](problems.md#natparkspalettes)|0.2.0 |__+1__ | | | +|[neatmaps](problems.md#neatmaps)|2.1.0 |__+1__ | |1 | +|[NHSRplotthedots](problems.md#nhsrplotthedots)|0.1.0 |__+1__ | |1 | +|[nic](problems.md#nic) |0.0.2 |__+1__ | | | +|[NIMAA](problems.md#nimaa)|0.2.1 |__+3__ | |2 | +|[nlmixr2plot](problems.md#nlmixr2plot)|3.0.1 |__+1__ | | | +|[nonmem2R](problems.md#nonmem2r)|0.2.5 |__+2__ | | | +|[normfluodbf](problems.md#normfluodbf)|2.0.0 |__+1__ | | | +|[nprobust](problems.md#nprobust)|0.5.0 |__+1__ | | | +|[nuts](problems.md#nuts)|1.1.0 |__+1__ | | | +|[nzelect](problems.md#nzelect)|0.4.0 |__+1__ | |2 | +|[ofpetrial](problems.md#ofpetrial)|0.1.2 |__+1__ | | | +|[OmicNavigator](problems.md#omicnavigator)|1.13.13 |__+1__ |1 | | +|[onewaytests](problems.md#onewaytests)|3.0 |__+1__ | | | +|[ordinalsimr](problems.md#ordinalsimr)|0.2.0 |__+1__ | | | +|[OTclust](problems.md#otclust)|1.0.6 |__+2__ | | | +|[pafr](problems.md#pafr)|0.0.2 |__+1__ | |1 | +|[paletteer](problems.md#paletteer)|1.6.0 |__+1__ | | | +|[palettes](problems.md#palettes)|0.2.1 |__+2__ | | | +|[PAMscapes](problems.md#pamscapes)|0.11.3 |__+1__ | | | +|[pathfindR](problems.md#pathfindr)|2.4.2 |__+1__ | | | +|[pathviewr](problems.md#pathviewr)|1.1.7 |__+1__ | | | +|[pdxTrees](problems.md#pdxtrees)|0.4.0 |__+1__ | |1 | +|[personalized](problems.md#personalized)|0.2.7 |__+1__ | |1 | +|[plantTracker](problems.md#planttracker)|1.1.0 |__+1__ | | | +|[Plasmidprofiler](problems.md#plasmidprofiler)|0.1.6 |__+1__ | | | +|[plotDK](problems.md#plotdk)|0.1.0 |__+1__ | |2 | +|[plothelper](problems.md#plothelper)|0.1.9 |__+1__ | |1 | +|[plotly](problems.md#plotly)|4.10.4 |__+2__ | |1 | +|[plotor](problems.md#plotor)|0.5.2 |__+1__ | | | +|[plotROC](problems.md#plotroc)|2.3.1 |__+3__ | | | +|[plotthis](problems.md#plotthis)|0.6.1 |__+1__ | | | +|[pmartR](problems.md#pmartr)|2.5.0 |__+1__ | |1 | +|[pmxTools](problems.md#pmxtools)|1.3 |__+1__ | |2 | +|[PoweREST](problems.md#powerest)|0.1.0 |__+1__ | | | +|[PPQplan](problems.md#ppqplan)|1.1.0 |__+1__ | |2 | +|[ppseq](problems.md#ppseq)|0.2.5 |__+1__ | |1 | +|[precintcon](problems.md#precintcon)|2.3.0 |__+1__ | | | +|[predictMe](problems.md#predictme)|0.1 |__+2__ | | | +|[prevR](problems.md#prevr)|5.0.0 |__+1__ | |1 | +|[probably](problems.md#probably)|1.0.3 |__+1__ | | | +|[processmapR](problems.md#processmapr)|0.5.6 |__+1__ | | | +|[profoc](problems.md#profoc)|1.3.3 |__+1__ | |1 | +|[psborrow](problems.md#psborrow)|0.2.2 |__+1__ |__+1__ | | +|[pscore](problems.md#pscore)|0.4.0 | |__+1__ | | +|[pubh](problems.md#pubh)|2.0.0 |__+1__ | | | +|[qlifetable](problems.md#qlifetable)|0.0.2-6 |__+1__ | |1 | +|[quantities](problems.md#quantities)|0.2.3 |__+1__ | | | +|[QurvE](problems.md#qurve)|1.1.1 |__+1__ | |1 | +|[R2sample](problems.md#r2sample)|4.0.1 |__+1__ | |1 | +|[r6qualitytools](problems.md#r6qualitytools)|1.0.1 |__+1__ | | | +|[Radviz](problems.md#radviz)|0.9.4 |__+2__ | |1 | +|[rassta](problems.md#rassta)|1.0.6 |__+2__ | | | +|[rasterdiv](problems.md#rasterdiv)|0.3.6 |__+1__ | | | +|[rater](problems.md#rater)|1.3.1 |__+1__ | |3 | +|[ratlas](problems.md#ratlas)|0.1.0 |__+2__ | |1 | +|[RavenR](problems.md#ravenr)|2.2.2 |__+1__ | | | +|[RBesT](problems.md#rbest)|1.8-2 |__+1__ | |2 | +|[RcmdrPlugin.RiskDemo](problems.md#rcmdrpluginriskdemo)|3.2 |__+1__ | | | +|[rddensity](problems.md#rddensity)|2.6 |__+1__ | | | +|[registr](problems.md#registr)|2.1.0 |__+1__ | |2 | +|[regtomean](problems.md#regtomean)|1.2 | |__+1__ |1 | +|[rempsyc](problems.md#rempsyc)|0.1.9 |__+3__ | | | +|[ReturnCurves](problems.md#returncurves)|1.0.1 |__+2__ | | | +|[rLakeHabitat](problems.md#rlakehabitat)|1.0.0 |__+2__ | | | +|[RNAseqQC](problems.md#rnaseqqc)|0.2.1 |__+1__ | |1 | +|[roahd](problems.md#roahd)|1.4.3 |__+1__ | |2 | +|[romic](problems.md#romic)|1.1.3 |__+1__ | |1 | +|[roptions](problems.md#roptions)|1.0.3 |__+1__ | |1 | +|[SAMprior](problems.md#samprior)|2.0.0 |__+1__ | | | +|[saros](problems.md#saros)|1.5.1 |__+2__ | | | +|[scoringutils](problems.md#scoringutils)|2.1.0 |__+1__ | | | +|[scplot](problems.md#scplot)|0.5.1 | |__+1__ | | +|[scRNAstat](problems.md#scrnastat)|0.1.1.1 | |1 |__+1__ | +|[scUtils](problems.md#scutils)|0.1.0 |__+1__ | |1 | +|[SCVA](problems.md#scva)|1.3.1 |__+1__ | | | +|[SDMtune](problems.md#sdmtune)|1.3.2 |__+1__ | |__+1__ | +|[seAMLess](problems.md#seamless)|0.1.1 |__+1__ | | | +|[see](problems.md#see) |0.11.0 |__+2__ | | | +|[seedreg](problems.md#seedreg)|1.0.3 |__+1__ | | | +|[sglg](problems.md#sglg)|0.2.2 |__+1__ | | | +|[sgsR](problems.md#sgsr)|1.4.5 |__+1__ | | | +|[SHAPforxgboost](problems.md#shapforxgboost)|0.1.3 |__+1__ | | | +|[shapviz](problems.md#shapviz)|0.9.7 |__+1__ | |1 | +|[simDAG](problems.md#simdag)|0.3.0 |__+1__ | | | +|[sjPlot](problems.md#sjplot)|2.8.17 |__+1__ | | | +|[skewlmm](problems.md#skewlmm)|1.1.2 |__+1__ | | | +|[smer](problems.md#smer)|0.0.1 |__+1__ | |2 | +|[soc.ca](problems.md#socca)|0.8.0 |__+1__ | |3 | +|[SoupX](problems.md#soupx)|1.6.2 |__+1__ | |1 | +|[spectralR](problems.md#spectralr)|0.1.3 |__+1__ | | | +|[spinifex](problems.md#spinifex)|0.3.8 |__+1__ | | | +|[sport](problems.md#sport)|0.2.1 |__+1__ | |1 | +|[SqueakR](problems.md#squeakr)|1.3.0 |__+1__ | |1 | +|[statgenGWAS](problems.md#statgengwas)|1.0.11 |__+1__ | |1 | +|[statgenGxE](problems.md#statgengxe)|1.0.9 |__+1__ | |1 | +|[statgenHTP](problems.md#statgenhtp)|1.0.8 |__+1__ | |2 | +|[statgenIBD](problems.md#statgenibd)|1.0.8 |__+1__ | |2 | +|[stats19](problems.md#stats19)|3.3.1 |__+1__ | | | +|[tabledown](problems.md#tabledown)|1.0.0 |__+1__ | |1 | +|[TCIU](problems.md#tciu)|1.2.7 |__+2__ | |1 | +|[telraamStats](problems.md#telraamstats)|1.1.2 |__+2__ | |1 | +|[thematic](problems.md#thematic)|0.1.6 |__+2__ | | | +|[tidycat](problems.md#tidycat)|0.1.2 |__+2__ | |1 | +|[tidyCDISC](problems.md#tidycdisc)|0.2.1 |__+1__ | |1 | +|[tidyposterior](problems.md#tidyposterior)|1.0.1 |__+1__ | | | +|[timetk](problems.md#timetk)|2.9.0 |__+1__ | |1 | +|[track2KBA](problems.md#track2kba)|1.1.2 |__+1__ | | | +|[tradeoffaucdim](problems.md#tradeoffaucdim)|0.1.0 |__+1__ | |1 | +|[trelliscopejs](problems.md#trelliscopejs)|0.2.6 |__+1__ | | | +|[tricolore](problems.md#tricolore)|1.2.4 |__+2__ |__+1__ |1 | +|[twowaytests](problems.md#twowaytests)|1.5 |__+1__ | | | +|[umiAnalyzer](problems.md#umianalyzer)|1.0.0 |__+1__ | | | +|[usmap](problems.md#usmap)|0.7.1 |__+3__ | |2 | +|[vaccineff](problems.md#vaccineff)|1.0.0 |__+1__ | | | +|[valr](problems.md#valr)|0.8.3 |__+1__ | |1 | +|[vangogh](problems.md#vangogh)|0.1.1 |__+1__ | | | +|[vDiveR](problems.md#vdiver)|2.0.1 |__+1__ | |1 | +|[vecmatch](problems.md#vecmatch)|1.1.0 |__+3__ | |1 | +|[vivaldi](problems.md#vivaldi)|1.0.1 |__+3__ | |1 | +|[voluModel](problems.md#volumodel)|0.2.2 |__+2__ | | | +|[vvshiny](problems.md#vvshiny)|0.1.1 |__+1__ | | | +|[wilson](problems.md#wilson)|2.4.2 |__+1__ | | | +|[wpa](problems.md#wpa) |1.9.1 |__+1__ | | | +|[xaringanthemer](problems.md#xaringanthemer)|0.4.3 |__+1__ | | | +|[xpose](problems.md#xpose)|0.4.19 |__+3__ | | | +|[xpose.xtras](problems.md#xposextras)|0.0.2 |__+3__ | |2 | +|[xray](problems.md#xray)|0.2 |__+1__ | | | + diff --git a/revdep/cran.md b/revdep/cran.md index d521f55150..6368147dff 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,48 +1,39 @@ ## revdepcheck results -We checked 5478 reverse dependencies (5461 from CRAN + 17 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 5713 reverse dependencies (5712 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 347 new problems - * We failed to check 179 packages + * We saw 354 new problems + * We failed to check 21 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* ABHgenotypeR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - * actxps - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * adklakedata checking examples ... ERROR -* adobeanalyticsr - checking whether package ‘adobeanalyticsr’ can be installed ... WARNING - checking R code for possible problems ... NOTE - * adw checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * AeRobiology - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* agricolaeplotr - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* afex + checking re-building of vignette outputs ... ERROR -* agridat +* AgroR + checking examples ... ERROR + +* alookr + checking examples ... ERROR + +* AmpliconDuo checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE * AnalysisLin checking examples ... ERROR @@ -53,29 +44,22 @@ Issues with CRAN packages are summarised below. * ANN2 checking tests ... ERROR -* APCI +* APackOfTheClones + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... ERROR * APCtools checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * applicable checking tests ... ERROR -* ARPALData - checking examples ... ERROR - checking whether package ‘ARPALData’ can be installed ... WARNING - checking R code for possible problems ... NOTE - * arulesViz - checking whether package ‘arulesViz’ can be installed ... WARNING - -* asremlPlus - checking whether package ‘asremlPlus’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * autocogs checking tests ... ERROR @@ -84,34 +68,14 @@ Issues with CRAN packages are summarised below. checking examples ... ERROR checking tests ... ERROR -* autoTS - checking re-building of vignette outputs ... NOTE - -* backShift +* bakeoff checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘backShift’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE * bayesAB checking tests ... ERROR -* bayesforecast - checking running R code from vignettes ... ERROR - checking whether package ‘bayesforecast’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE - -* BayesGrowth - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* BayesianMCPMod - checking examples ... ERROR +* BayesERtools checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE * BayesianReasoning checking tests ... ERROR @@ -119,36 +83,27 @@ Issues with CRAN packages are summarised below. * BayesMallows checking tests ... ERROR +* BayesMultiMode + checking whether package ‘BayesMultiMode’ can be installed ... WARNING + * bayesplot checking tests ... ERROR -* BCEA +* BCClong checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘BCEA’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* BEAMR - checking examples ... ERROR - checking whether package ‘BEAMR’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* beastt - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* biclust +* BCEA checking examples ... ERROR - checking whether package ‘biclust’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR * biclustermd checking tests ... ERROR -* biodosetools +* BIGL + checking re-building of vignette outputs ... ERROR + +* BiVariAn + checking examples ... ERROR checking tests ... ERROR * boxly @@ -156,6 +111,14 @@ Issues with CRAN packages are summarised below. * brolgar checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* bullseye + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* canvasXpress + checking tests ... ERROR * cartograflow checking examples ... ERROR @@ -163,102 +126,67 @@ Issues with CRAN packages are summarised below. * cats checking examples ... ERROR -* CausalImpact +* centerline checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘CausalImpact’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE - -* celltrackR - checking re-building of vignette outputs ... NOTE - -* cellularautomata - checking running R code from vignettes ... ERROR - -* CensMFM - checking whether package ‘CensMFM’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* CFO +* Certara.Xpose.NLME checking examples ... ERROR - checking whether package ‘CFO’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* changepoint.geo - checking tests ... ERROR * cheem checking tests ... ERROR -* chillR +* choroplethr checking examples ... ERROR - checking whether package ‘chillR’ can be installed ... WARNING - checking R code for possible problems ... NOTE * chronicle checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* cjoint +* classmap checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘cjoint’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* clickstream - checking whether package ‘clickstream’ can be installed ... WARNING * clinDataReview checking examples ... ERROR checking tests ... ERROR - checking re-building of vignette outputs ... NOTE - -* clinDR - checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * clinUtils - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* CLONETv2 - checking whether package ‘CLONETv2’ can be installed ... WARNING + checking re-building of vignette outputs ... ERROR -* ClusROC - checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘ClusROC’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* clockSim + checking whether package ‘clockSim’ can be installed ... WARNING * clustcurv - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* clustMD - checking whether package ‘clustMD’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* clustTMB + checking re-building of vignette outputs ... ERROR * cnmap checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* cocktailApp + checking whether package ‘cocktailApp’ can be installed ... WARNING -* codaredistlm +* coda.plot checking examples ... ERROR + checking whether package ‘coda.plot’ can be installed ... WARNING -* codez - checking whether package ‘codez’ can be installed ... WARNING +* cogmapr + checking examples ... ERROR * CohortPlat checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * colorrepel checking examples ... ERROR +* contsurvplot + checking tests ... ERROR + * CoreMicrobiomeR checking examples ... ERROR @@ -267,159 +195,106 @@ Issues with CRAN packages are summarised below. * corrViz checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * CoSMoS - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * countfitteR checking tests ... ERROR * covidcast checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* creditmodel - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘creditmodel’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE - -* cricketr - checking whether package ‘cricketr’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* crosshap - checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* CRTgeeDR - checking whether package ‘CRTgeeDR’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* crmPack + checking re-building of vignette outputs ... ERROR * ctrialsgov checking tests ... ERROR * cubble - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* DAISIE - checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* DAISIEprep +* cvms checking tests ... ERROR -* daltoolbox - checking examples ... ERROR - checking whether package ‘daltoolbox’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* dawaR +* cylcop checking examples ... ERROR -* DDPNA +* cystiSim checking examples ... ERROR - checking whether package ‘DDPNA’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* Deducer - checking examples ... ERROR - checking whether package ‘Deducer’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* D2MCS + checking tests ... ERROR -* deeptime - checking examples ... ERROR +* daiquiri checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* desplot - checking examples ... ERROR +* DAISIEprep checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘desplot’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* diceR +* dampack checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* directlabels +* deeptime checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR -* distributional +* Dforest checking examples ... ERROR -* dittoViz +* DImodelsVis checking examples ... ERROR - checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* divent - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* directlabels + checking re-building of vignette outputs ... ERROR -* doBy - checking whether package ‘doBy’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* distributions3 + checking tests ... ERROR -* DoseFinding +* dittoViz checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘DoseFinding’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE * dotsViolin checking examples ... ERROR -* dr4pl - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘dr4pl’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE +* duke + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* DRomics +* easysurv checking examples ... ERROR - checking whether package ‘DRomics’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* drpop - checking whether package ‘drpop’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* EbayesThresh + checking re-building of vignette outputs ... ERROR -* duke +* ecocbo + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* dymo - checking whether package ‘dymo’ can be installed ... WARNING - -* dynr - checking whether package ‘dynr’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* easysurv +* ecolRxC checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE * EGM checking tests ... ERROR -* entropart +* eiCircles + checking examples ... ERROR + +* eks checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* enrichR + checking re-building of vignette outputs ... ERROR * epiCleanr checking examples ... ERROR @@ -430,114 +305,103 @@ Issues with CRAN packages are summarised below. * EQUALSTATS checking examples ... ERROR -* esci - checking examples ... ERROR - checking tests ... ERROR +* equatiomatic + checking re-building of vignette outputs ... ERROR -* evalITR - checking re-building of vignette outputs ... NOTE +* errors + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * eventstudyr checking tests ... ERROR -* expirest - checking tests ... ERROR - * explainer checking examples ... ERROR +* ez + checking examples ... ERROR + * ezEDA checking tests ... ERROR -* fable.prophet - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - * fabletools - checking examples ... ERROR checking tests ... ERROR * fairmodels checking tests ... ERROR -* FCPS +* FARS + checking re-building of vignette outputs ... ERROR + +* faux checking examples ... ERROR - checking whether package ‘FCPS’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking tests ... ERROR * fdANOVA checking examples ... ERROR -* fddm - checking running R code from vignettes ... ERROR - * feasts checking tests ... ERROR -* ffp - checking examples ... ERROR - -* fido +* fgeo.plot checking examples ... ERROR checking tests ... ERROR -* FielDHub - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* figuRes2 +* fitdistrplus checking examples ... ERROR - checking running R code from vignettes ... ERROR - -* flexsurv checking tests ... ERROR - checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... ERROR * flipr - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* foqat + checking re-building of vignette outputs ... ERROR -* forestmodel +* forestPSD checking examples ... ERROR - checking whether package ‘forestmodel’ can be installed ... WARNING - checking R code for possible problems ... NOTE * frailtyEM checking examples ... ERROR -* gapmap +* func2vis checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE * gapminder checking examples ... ERROR -* GEInter - checking whether package ‘GEInter’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* GCalignR + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* geneSLOPE + checking whether package ‘geneSLOPE’ can be installed ... WARNING * geoheatmap - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * geomtextpath checking examples ... ERROR checking tests ... ERROR +* gg1d + checking examples ... ERROR + checking tests ... ERROR + * ggalign checking for code/documentation mismatches ... WARNING -* GGally - checking tests ... ERROR - * gganimate checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* ggblanket +* ggborderline checking examples ... ERROR +* ggcorset + checking re-building of vignette outputs ... ERROR + * ggdark checking examples ... ERROR checking tests ... ERROR @@ -545,20 +409,29 @@ Issues with CRAN packages are summarised below. * ggdemetra checking whether package ‘ggdemetra’ can be installed ... WARNING -* ggdist +* ggDoubleHeat + checking examples ... ERROR + +* ggEDA checking examples ... ERROR checking tests ... ERROR - checking re-building of vignette outputs ... NOTE * ggedit checking examples ... ERROR -* ggESDA +* ggenealogy checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * ggfixest checking tests ... ERROR +* ggfocus + checking examples ... ERROR + +* ggfootball + checking examples ... ERROR + * ggforce checking examples ... ERROR @@ -568,274 +441,287 @@ Issues with CRAN packages are summarised below. * ggfortify checking tests ... ERROR +* ggfun + checking re-building of vignette outputs ... ERROR + +* gggenomes + checking examples ... ERROR + * ggh4x checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* gghalves + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * gghighlight checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* gghourglass + checking examples ... ERROR + checking tests ... ERROR * ggiraph checking examples ... ERROR checking tests ... ERROR -* ggmap - checking whether package ‘ggmap’ can be installed ... WARNING +* ggiraphExtra + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* ggmcmc +* gglgbtq checking examples ... ERROR + checking tests ... ERROR + +* ggmap + checking whether package ‘ggmap’ can be installed ... WARNING * ggmice - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * ggmulti checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* ggnewscale + checking tests ... ERROR + +* ggpackets + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * ggparallel checking tests ... ERROR -* ggplotlyExtra +* ggparty + checking re-building of vignette outputs ... ERROR + +* ggplot2.utils + checking tests ... ERROR + +* ggpointdensity checking examples ... ERROR * ggpol checking examples ... ERROR +* ggpp + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + * ggpubr checking tests ... ERROR * ggraph checking examples ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * ggredist checking examples ... ERROR +* ggResidpanel + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + * ggRtsy checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * ggseqplot checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * ggside checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘ggside’ can be installed ... WARNING + checking re-building of vignette outputs ... ERROR checking for code/documentation mismatches ... WARNING checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE - -* ggsmc - checking running R code from vignettes ... ERROR - -* ggspatial - checking examples ... ERROR - checking tests ... ERROR - -* ggstatsplot - checking examples ... ERROR * ggswissmaps checking whether package ‘ggswissmaps’ can be installed ... WARNING checking whether the namespace can be loaded with stated dependencies ... NOTE -* ggupset +* ggTimeSeries checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * ggVennDiagram - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* Greymodels +* gprofiler2 checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* GWASinspector - checking whether package ‘GWASinspector’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* GWlasso - checking examples ... ERROR +* grafify + checking tests ... ERROR -* harbinger +* Greymodels checking examples ... ERROR - checking whether package ‘harbinger’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* HCmodelSets - checking examples ... ERROR - checking whether package ‘HCmodelSets’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* hatchR + checking tests ... ERROR * healthyR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* healthyR.ai + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * healthyR.ts checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * heatmaply checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* heemod - checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... ERROR * hesim checking tests ... ERROR * hmsidwR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * HVT checking examples ... ERROR - checking whether package ‘HVT’ can be installed ... WARNING - checking R code for possible problems ... NOTE * hypsoLoop checking whether package ‘hypsoLoop’ can be installed ... WARNING -* iCARH - checking whether package ‘iCARH’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* ibdsim2 + checking examples ... ERROR -* ICSsmoothing +* ichimoku checking tests ... ERROR -* incidental - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* industRial - checking examples ... ERROR +* implicitMeasures + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR * infer - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR * inferCSN checking examples ... ERROR * injurytools - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * inTextSummaryTable checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* inti - checking whether package ‘inti’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* IPV - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* iNZightTS + checking tests ... ERROR * IRon checking examples ... ERROR -* isoorbi - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* jenga - checking whether package ‘jenga’ can be installed ... WARNING - * karel checking examples ... ERROR checking tests ... ERROR * kDGLM checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* Keyboard +* khroma checking examples ... ERROR - checking whether package ‘Keyboard’ can be installed ... WARNING - checking R code for possible problems ... NOTE + +* L2E + checking re-building of vignette outputs ... ERROR + +* lans2r + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR * latentcor checking examples ... ERROR +* latrend + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + * lcars checking examples ... ERROR - checking running R code from vignettes ... ERROR + +* legendry + checking examples ... ERROR + checking tests ... ERROR * lemon checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * lfproQC checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* lilikoi - checking whether package ‘lilikoi’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR * LMoFit - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* lnmixsurv + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* LocalCop - checking re-building of vignette outputs ... NOTE +* LorenzRegression + checking examples ... ERROR -* lognorm - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* lpdensity + checking examples ... ERROR -* lsl +* lphom checking examples ... ERROR -* MAINT.Data +* lspartition checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘MAINT.Data’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* MarketMatching +* manynet + checking installed package size ... NOTE + +* mapindia checking re-building of vignette outputs ... ERROR -* metacart +* marquee + checking examples ... ERROR + +* mcStats + checking tests ... ERROR + +* MendelianRandomization checking examples ... ERROR - checking whether package ‘metacart’ can be installed ... WARNING - checking R code for possible problems ... NOTE * MetAlyzer checking examples ... ERROR +* MetaNet + checking examples ... ERROR + +* metaquant + checking examples ... ERROR + +* MetBrewer + checking examples ... ERROR + * metR checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * mgcViz - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* MIC + checking examples ... ERROR * migraph checking tests ... ERROR @@ -850,142 +736,149 @@ Issues with CRAN packages are summarised below. checking tests ... ERROR * MiscMetabar - checking examples ... ERROR checking tests ... ERROR * misspi checking examples ... ERROR +* misty + checking examples ... ERROR + * mizer checking tests ... ERROR -* MLEce +* MKpower checking examples ... ERROR - checking whether package ‘MLEce’ can be installed ... WARNING - checking R code for possible problems ... NOTE * modeltime.resample checking tests ... ERROR -* moreparty - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* modgo + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* mppR - checking running R code from vignettes ... ERROR - checking whether package ‘mppR’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE +* mpactr + checking re-building of vignette outputs ... ERROR * MPTmultiverse checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* mtb - checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* mudfold - checking whether package ‘mudfold’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* MRZero + checking examples ... ERROR -* mulgar +* mstate checking examples ... ERROR * MultiTraits checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* mvSLOUCH - checking re-building of vignette outputs ... NOTE - -* naive - checking whether package ‘naive’ can be installed ... WARNING - -* ncappc - checking whether package ‘ncappc’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR + checking whether package ‘MultiTraits’ can be installed ... WARNING -* neatmaps +* mvdalab checking examples ... ERROR -* NetFACS +* NatParksPalettes checking examples ... ERROR - checking running R code from vignettes ... ERROR -* NetworkInference +* neatmaps checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘NetworkInference’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE * NHSRplotthedots checking tests ... ERROR -* nichetools - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* nic + checking re-building of vignette outputs ... ERROR * NIMAA checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* nzelect +* nlmixr2plot + checking tests ... ERROR + +* nonmem2R checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* normfluodbf + checking tests ... ERROR + +* nprobust + checking examples ... ERROR + +* nuts + checking re-building of vignette outputs ... ERROR + +* nzelect + checking re-building of vignette outputs ... ERROR -* oddsratio +* ofpetrial checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE * OmicNavigator checking tests ... ERROR -* ordbetareg +* onewaytests checking examples ... ERROR -* pafr +* ordinalsimr checking tests ... ERROR -* pathviewr +* OTclust + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* pafr checking tests ... ERROR -* pdxTrees - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* paletteer + checking tests ... ERROR -* PeakError +* palettes checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* PeakSegJoint +* PAMscapes checking examples ... ERROR -* PeakSegOptimal - checking examples ... ERROR +* pathfindR + checking tests ... ERROR + +* pathviewr + checking tests ... ERROR + +* pdxTrees + checking re-building of vignette outputs ... ERROR * personalized checking tests ... ERROR +* plantTracker + checking re-building of vignette outputs ... ERROR + * Plasmidprofiler checking examples ... ERROR * plotDK checking tests ... ERROR -* PlotFTIR +* plothelper checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR * plotly checking examples ... ERROR checking tests ... ERROR +* plotor + checking tests ... ERROR + +* plotROC + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + * plotthis checking examples ... ERROR @@ -995,43 +888,24 @@ Issues with CRAN packages are summarised below. * pmxTools checking tests ... ERROR -* pogit - checking whether package ‘pogit’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* posterior - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* PoweREST + checking examples ... ERROR * PPQplan - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * ppseq - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * precintcon checking examples ... ERROR -* pRecipe - checking whether package ‘pRecipe’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* PReMiuM - checking whether package ‘PReMiuM’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* prevR +* predictMe checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘prevR’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* priorsense - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* prevR + checking re-building of vignette outputs ... ERROR * probably checking tests ... ERROR @@ -1039,91 +913,88 @@ Issues with CRAN packages are summarised below. * processmapR checking tests ... ERROR +* profoc + checking re-building of vignette outputs ... ERROR + * psborrow checking tests ... ERROR + checking whether package ‘psborrow’ can be installed ... WARNING -* PupilPre - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* pscore + checking whether package ‘pscore’ can be installed ... WARNING -* qgcomp +* pubh checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘qgcomp’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* qpNCA - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘qpNCA’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE +* qlifetable + checking examples ... ERROR -* r2dii.plot - checking tests ... ERROR +* quantities + checking re-building of vignette outputs ... ERROR -* r4ss - checking whether package ‘r4ss’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* QurvE + checking examples ... ERROR + +* R2sample + checking re-building of vignette outputs ... ERROR * r6qualitytools checking examples ... ERROR - checking whether package ‘r6qualitytools’ can be installed ... WARNING - checking R code for possible problems ... NOTE * Radviz checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * rassta checking examples ... ERROR checking tests ... ERROR +* rasterdiv + checking re-building of vignette outputs ... ERROR + * rater checking tests ... ERROR * ratlas checking tests ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* RclusTool +* RavenR checking examples ... ERROR - checking whether package ‘RclusTool’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* RDS +* RBesT checking examples ... ERROR - checking whether package ‘RDS’ can be installed ... WARNING - checking R code for possible problems ... NOTE + +* RcmdrPlugin.RiskDemo + checking examples ... ERROR + +* rddensity + checking examples ... ERROR + +* registr + checking re-building of vignette outputs ... ERROR * regtomean checking whether package ‘regtomean’ can be installed ... WARNING -* RKorAPClient +* rempsyc + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* rmcfs - checking whether package ‘rmcfs’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* ReturnCurves + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* rnmamod +* rLakeHabitat checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘rnmamod’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* roahd - checking examples ... ERROR +* RNAseqQC + checking re-building of vignette outputs ... ERROR -* robomit +* roahd checking examples ... ERROR - checking whether package ‘robomit’ can be installed ... WARNING - checking R code for possible problems ... NOTE * romic checking tests ... ERROR @@ -1131,19 +1002,21 @@ Issues with CRAN packages are summarised below. * roptions checking examples ... ERROR -* rsimsum - checking whether package ‘rsimsum’ can be installed ... WARNING - -* rSRD +* SAMprior checking examples ... ERROR - checking whether package ‘rSRD’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* saeRobust +* saros checking examples ... ERROR checking tests ... ERROR - checking whether package ‘saeRobust’ can be installed ... WARNING - checking R code for possible problems ... NOTE + +* scoringutils + checking re-building of vignette outputs ... ERROR + +* scplot + checking whether package ‘scplot’ can be installed ... WARNING + +* scRNAstat + checking installed package size ... NOTE * scUtils checking tests ... ERROR @@ -1158,16 +1031,12 @@ Issues with CRAN packages are summarised below. * seAMLess checking examples ... ERROR -* seedreg +* see checking examples ... ERROR + checking tests ... ERROR -* segen - checking whether package ‘segen’ can be installed ... WARNING - -* sensitivity +* seedreg checking examples ... ERROR - checking whether package ‘sensitivity’ can be installed ... WARNING - checking R code for possible problems ... NOTE * sglg checking examples ... ERROR @@ -1178,40 +1047,26 @@ Issues with CRAN packages are summarised below. * SHAPforxgboost checking examples ... ERROR -* SHELF - checking whether package ‘SHELF’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* signatureSurvival +* shapviz checking examples ... ERROR - checking whether package ‘signatureSurvival’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* SimNPH - checking tests ... ERROR +* simDAG + checking re-building of vignette outputs ... ERROR -* simRestore - checking tests ... ERROR +* sjPlot + checking re-building of vignette outputs ... ERROR -* singleCellHaystack +* skewlmm checking examples ... ERROR - checking whether package ‘singleCellHaystack’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* SNPannotator - checking whether package ‘SNPannotator’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* smer + checking re-building of vignette outputs ... ERROR * soc.ca checking examples ... ERROR - checking whether package ‘soc.ca’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* SOMbrero - checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘SOMbrero’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* SoupX + checking re-building of vignette outputs ... ERROR * spectralR checking tests ... ERROR @@ -1219,106 +1074,71 @@ Issues with CRAN packages are summarised below. * spinifex checking tests ... ERROR -* spooky - checking whether package ‘spooky’ can be installed ... WARNING - * sport checking tests ... ERROR * SqueakR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * statgenGWAS checking tests ... ERROR +* statgenGxE + checking tests ... ERROR + * statgenHTP checking tests ... ERROR -* Superpower - checking examples ... ERROR +* statgenIBD checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘Superpower’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* surveyexplorer - checking examples ... ERROR +* stats19 + checking re-building of vignette outputs ... ERROR * tabledown checking examples ... ERROR * TCIU checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* tcplfit2 - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* tetragon - checking whether package ‘tetragon’ can be installed ... WARNING +* telraamStats + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR * thematic checking examples ... ERROR checking tests ... ERROR -* tidybayes - checking examples ... ERROR - * tidycat checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * tidyCDISC checking tests ... ERROR -* tidyplots - checking examples ... ERROR +* tidyposterior checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* tidytreatment - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE * timetk checking tests ... ERROR -* TOSTER - checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* TransProR - checking examples ... ERROR - -* TreatmentPatterns +* track2KBA checking tests ... ERROR -* TreatmentSelection +* tradeoffaucdim checking examples ... ERROR - checking whether package ‘TreatmentSelection’ can be installed ... WARNING - checking R code for possible problems ... NOTE * trelliscopejs checking tests ... ERROR * tricolore checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* tsnet - checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + checking whether package ‘tricolore’ can be installed ... WARNING -* UCSCXenaShiny - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* twowaytests + checking examples ... ERROR * umiAnalyzer checking examples ... ERROR @@ -1326,8 +1146,7 @@ Issues with CRAN packages are summarised below. * usmap checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * vaccineff checking tests ... ERROR @@ -1335,242 +1154,71 @@ Issues with CRAN packages are summarised below. * valr checking tests ... ERROR -* visOmopResults - checking tests ... ERROR +* vangogh + checking re-building of vignette outputs ... ERROR + +* vDiveR + checking examples ... ERROR -* visvow +* vecmatch + checking examples ... ERROR checking tests ... ERROR - checking whether package ‘visvow’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR * vivaldi checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * voluModel checking examples ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * vvshiny checking tests ... ERROR -* VWPre - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* WebAnalytics - checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘WebAnalytics’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* WhatsR - checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘WhatsR’ can be installed ... WARNING - checking R code for possible problems ... NOTE - * wilson checking tests ... ERROR -* wordmap +* wpa checking tests ... ERROR +* xaringanthemer + checking re-building of vignette outputs ... ERROR + * xpose checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * xpose.xtras checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* yamlet +* xray checking examples ... ERROR - checking tests ... ERROR ### Failed to check -* abctools (NA) -* adjustedCurves (NA) -* animalEKF (NA) -* ANOM (NA) -* atRisk (NA) -* autoReg (NA) -* AutoScore (NA) -* bartMan (NA) -* bayesDP (NA) -* BayesianFactorZoo (NA) -* BayesSurvive (NA) -* BCClong (NA) -* BGGM (NA) -* binsreg (NA) -* bspcov (NA) -* BSTZINB (NA) -* BuyseTest (NA) -* CAESAR.Suite (NA) -* CARBayesST (NA) -* Certara.VPCResults (NA) -* CGPfunctions (NA) -* cinaR (NA) -* cmprskcoxmsm (NA) -* COMMA (NA) -* contsurvplot (NA) -* counterfactuals (NA) -* CRMetrics (NA) -* ctsem (NA) -* dartR.base (NA) -* dartR.captive (NA) -* dartR.popgen (NA) -* dartR.sexlinked (NA) -* dartR.sim (NA) -* dartR.spatial (NA) -* DepthProc (NA) -* DFD (NA) -* dMrs (NA) -* DR.SC (NA) -* dscoreMSM (NA) -* easybgm (NA) -* EcoEnsemble (NA) -* ecolottery (NA) -* EpiEstim (NA) -* evolqg (NA) -* flexrsurv (NA) -* ForecastComb (NA) -* gap (NA) -* gapfill (NA) -* genekitr (NA) -* GeneSelectR (NA) -* GeomComb (NA) -* ggtern (NA) -* ggThemeAssist (NA) -* gJLS2 (NA) -* grandR (NA) -* GseaVis (NA) -* hettx (NA) -* Hmisc (NA) -* Hmsc (NA) -* iClusterVB (NA) -* immcp (NA) -* inventorize (NA) -* invivoPKfit (NA) -* iNZightPlots (NA) -* iNZightRegression (NA) -* IRexamples (NA) -* jmBIG (NA) -* joineRML (NA) -* jsmodule (NA) -* kmc (NA) -* KMunicate (NA) -* L2E (NA) -* Landmarking (NA) -* lavaSearch2 (NA) -* llbayesireg (NA) -* lnmixsurv (NA) -* LorenzRegression (NA) -* lsirm12pl (NA) -* MARVEL (NA) -* MaxWiK (NA) -* mbsts (NA) -* MendelianRandomization (NA) -* miWQS (NA) -* mlmts (NA) -* mlr (NA) -* MRZero (NA) -* mstate (NA) -* multilevelTools (NA) -* multinma (NA) -* multipleOutcomes (NA) -* MuPETFlow (NA) -* NCA (NA) -* netcmc (NA) -* NetworkChange (NA) -* nlmeVPC (NA) -* NMADiagT (NA) -* NMF (NA) -* obliqueRSF (NA) -* OlinkAnalyze (NA) -* optweight (NA) -* OVtool (NA) -* pammtools (NA) -* paths (NA) -* pcvr (NA) -* PLMIX (NA) -* popstudy (NA) -* pould (NA) -* PoweREST (NA) -* powerly (NA) -* pre (NA) -* ProFAST (NA) -* psbcSpeedUp (NA) -* pscore (NA) -* qPCRtools (NA) -* qris (NA) -* qte (NA) -* quantilogram (NA) -* quid (NA) -* RcmdrPlugin.RiskDemo (NA) -* rddtools (NA) -* relsurv (NA) -* ReporterScore (NA) -* riskRegression (NA) -* robber (NA) -* robmed (NA) -* robmedExtra (NA) -* RPPanalyzer (NA) -* RQdeltaCT (NA) -* rstanarm (NA) -* rTwig (NA) -* RVA (NA) -* S4DM (NA) -* scCustomize (NA) -* SCdeconR (NA) -* scGate (NA) -* SCIntRuler (NA) -* scMappR (NA) -* scpi (NA) -* SCpubr (NA) -* scRNAstat (NA) -* sectorgap (NA) -* SEERaBomb (NA) -* semicmprskcoxmsm (NA) -* SensMap (NA) -* Seurat (NA) -* shinyTempSignal (NA) -* sievePH (NA) -* SiFINeT (NA) -* sigminer (NA) -* Signac (NA) -* SimplyAgree (NA) -* SNPassoc (NA) -* snplinkage (NA) -* SoupX (NA) -* SpaCCI (NA) -* sparsereg (NA) -* spectralAnalysis (NA) -* spikeSlabGAM (NA) -* stabiliser (NA) -* statsr (NA) -* streamDAG (NA) -* survex (NA) -* survHE (NA) -* survidm (NA) -* tempted (NA) -* TestAnaAPP (NA) -* tidydr (NA) -* tidyEdSurvey (NA) -* tidyseurat (NA) -* tidyvpc (NA) -* tinyarray (NA) -* treeclim (NA) -* TriDimRegression (NA) -* TSrepr (NA) -* twang (NA) -* vdg (NA) -* visa (NA) -* wppExplorer (NA) -* WRTDStidal (NA) +* bartMan (NA) +* bayesdfa (NA) +* ctsem (NA) +* EcoEnsemble (NA) +* fio (NA) +* GGally (NA) +* ggmosaic (NA) +* ggtern (NA) +* inventorize (NA) +* metabolic (NA) +* multinma (NA) +* OpenMx (NA) +* PieGlyph (NA) +* rmsb (NA) +* rshift (NA) +* RSP (NA) +* rstanarm (NA) +* streamDAG (NA) +* TestAnaAPP (NA) +* tidydr (NA) +* TriDimRegression (NA) diff --git a/revdep/failures.md b/revdep/failures.md index d5b7b812fc..d9f6f7a589 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,23 +1,23 @@ -# abctools +# bartMan
-* Version: 1.1.7 -* GitHub: https://github.com/dennisprangle/abctools -* Source code: https://github.com/cran/abctools -* Date/Publication: 2023-09-18 10:40:02 UTC -* Number of recursive dependencies: 75 +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/bartMan +* Date/Publication: 2024-07-24 12:10:02 UTC +* Number of recursive dependencies: 134 -Run `revdepcheck::cloud_details(, "abctools")` for more info +Run `revdepcheck::cloud_details(, "bartMan")` for more info
-## In both +## Newly broken -* checking whether package ‘abctools’ can be installed ... ERROR +* checking whether package ‘bartMan’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/abctools/new/abctools.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details. ``` ## Installation @@ -25,147 +25,113 @@ Run `revdepcheck::cloud_details(, "abctools")` for more info ### Devel ``` -* installing *source* package ‘abctools’ ... -** package ‘abctools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c abctools.c -o abctools.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o abctools.so abctools.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/abctools/new/abctools.Rcheck/00LOCK-abctools/00new/abctools/libs ** R ** data -** inst +*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in eval(exprs[i], envir) : object 'justify_grobs' not found +Error: unable to load R code in package ‘bartMan’ Execution halted -ERROR: lazy loading failed for package ‘abctools’ -* removing ‘/tmp/workdir/abctools/new/abctools.Rcheck/abctools’ +ERROR: lazy loading failed for package ‘bartMan’ +* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’ ``` ### CRAN ``` -* installing *source* package ‘abctools’ ... -** package ‘abctools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c abctools.c -o abctools.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o abctools.so abctools.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/abctools/old/abctools.Rcheck/00LOCK-abctools/00new/abctools/libs ** R ** data -** inst +*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘abctools’ -* removing ‘/tmp/workdir/abctools/old/abctools.Rcheck/abctools’ +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bartMan) ``` -# adjustedCurves +# bayesdfa
-* Version: 0.11.2 -* GitHub: https://github.com/RobinDenz1/adjustedCurves -* Source code: https://github.com/cran/adjustedCurves -* Date/Publication: 2024-07-29 14:30:02 UTC -* Number of recursive dependencies: 177 +* Version: 1.3.4 +* GitHub: https://github.com/fate-ewi/bayesdfa +* Source code: https://github.com/cran/bayesdfa +* Date/Publication: 2025-03-22 20:30:21 UTC +* Number of recursive dependencies: 85 -Run `revdepcheck::cloud_details(, "adjustedCurves")` for more info +Run `revdepcheck::cloud_details(, "bayesdfa")` for more info
-## Error before installation +## In both -### Devel +* checking whether package ‘bayesdfa’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. + ``` -``` -* using log directory ‘/tmp/workdir/adjustedCurves/new/adjustedCurves.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK -... ---- finished re-building ‘plot_customization.rmd’ +## Installation -SUMMARY: processing the following file failed: - ‘introduction.Rmd’ +### Devel -Error: Vignette re-building failed. +``` +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted - -* DONE -Status: 2 ERRORs, 1 WARNING, 3 NOTEs - - - +ERROR: configuration failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/adjustedCurves/old/adjustedCurves.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK -... ---- finished re-building ‘plot_customization.rmd’ - -SUMMARY: processing the following file failed: - ‘introduction.Rmd’ - -Error: Vignette re-building failed. +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted - -* DONE -Status: 2 ERRORs, 1 WARNING, 3 NOTEs - - - +ERROR: configuration failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ ``` -# animalEKF +# ctsem
-* Version: 1.2 -* GitHub: NA -* Source code: https://github.com/cran/animalEKF -* Date/Publication: 2023-09-29 15:32:41 UTC -* Number of recursive dependencies: 76 +* Version: 3.10.2 +* GitHub: https://github.com/cdriveraus/ctsem +* Source code: https://github.com/cran/ctsem +* Date/Publication: 2025-01-13 11:00:08 UTC +* Number of recursive dependencies: 158 -Run `revdepcheck::cloud_details(, "animalEKF")` for more info +Run `revdepcheck::cloud_details(, "ctsem")` for more info
## In both -* checking whether package ‘animalEKF’ can be installed ... ERROR +* checking whether package ‘ctsem’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/animalEKF/new/animalEKF.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. ``` ## Installation @@ -173,61 +139,77 @@ Run `revdepcheck::cloud_details(, "animalEKF")` for more info ### Devel ``` -* installing *source* package ‘animalEKF’ ... -** package ‘animalEKF’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘animalEKF’ -* removing ‘/tmp/workdir/animalEKF/new/animalEKF.Rcheck/animalEKF’ +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ ``` ### CRAN ``` -* installing *source* package ‘animalEKF’ ... -** package ‘animalEKF’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘animalEKF’ -* removing ‘/tmp/workdir/animalEKF/old/animalEKF.Rcheck/animalEKF’ +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ ``` -# ANOM +# EcoEnsemble
-* Version: 0.5 -* GitHub: https://github.com/PhilipPallmann/ANOM -* Source code: https://github.com/cran/ANOM -* Date/Publication: 2017-04-12 13:32:33 UTC -* Number of recursive dependencies: 63 +* Version: 1.1.2 +* GitHub: https://github.com/CefasRepRes/EcoEnsemble +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2025-03-18 18:20:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "ANOM")` for more info +Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info
## In both -* checking whether package ‘ANOM’ can be installed ... ERROR +* checking whether package ‘EcoEnsemble’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. ``` ## Installation @@ -235,63 +217,77 @@ Run `revdepcheck::cloud_details(, "ANOM")` for more info ### Devel ``` -* installing *source* package ‘ANOM’ ... -** package ‘ANOM’ successfully unpacked and MD5 sums checked +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ANOM’ -* removing ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/ANOM’ +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ ``` ### CRAN ``` -* installing *source* package ‘ANOM’ ... -** package ‘ANOM’ successfully unpacked and MD5 sums checked +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ANOM’ -* removing ‘/tmp/workdir/ANOM/old/ANOM.Rcheck/ANOM’ +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ ``` -# atRisk +# fio
-* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/atRisk -* Date/Publication: 2025-01-14 18:50:01 UTC -* Number of recursive dependencies: 37 +* Version: 0.1.6 +* GitHub: https://github.com/albersonmiranda/fio +* Source code: https://github.com/cran/fio +* Date/Publication: 2025-04-06 07:50:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "atRisk")` for more info +Run `revdepcheck::cloud_details(, "fio")` for more info
## In both -* checking whether package ‘atRisk’ can be installed ... ERROR +* checking whether package ‘fio’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/atRisk/new/atRisk.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/fio/new/fio.Rcheck/00install.out’ for details. ``` ## Installation @@ -299,12036 +295,133 @@ Run `revdepcheck::cloud_details(, "atRisk")` for more info ### Devel ``` -* installing *source* package ‘atRisk’ ... -** package ‘atRisk’ successfully unpacked and MD5 sums checked +* installing *source* package ‘fio’ ... +** package ‘fio’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in eval(ei, envir) : +------------------ [UNSUPPORTED RUST VERSION]------------------ +- Minimum supported Rust version is 1.77. +- Installed Rust version is 1.75.0. +--------------------------------------------------------------- +Calls: source -> withVisible -> eval -> eval Execution halted -ERROR: lazy loading failed for package ‘atRisk’ -* removing ‘/tmp/workdir/atRisk/new/atRisk.Rcheck/atRisk’ +ERROR: configuration failed for package ‘fio’ +* removing ‘/tmp/workdir/fio/new/fio.Rcheck/fio’ ``` ### CRAN ``` -* installing *source* package ‘atRisk’ ... -** package ‘atRisk’ successfully unpacked and MD5 sums checked +* installing *source* package ‘fio’ ... +** package ‘fio’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in eval(ei, envir) : +------------------ [UNSUPPORTED RUST VERSION]------------------ +- Minimum supported Rust version is 1.77. +- Installed Rust version is 1.75.0. +--------------------------------------------------------------- +Calls: source -> withVisible -> eval -> eval Execution halted -ERROR: lazy loading failed for package ‘atRisk’ -* removing ‘/tmp/workdir/atRisk/old/atRisk.Rcheck/atRisk’ +ERROR: configuration failed for package ‘fio’ +* removing ‘/tmp/workdir/fio/old/fio.Rcheck/fio’ ``` -# autoReg +# GGally
-* Version: 0.3.3 -* GitHub: https://github.com/cardiomoon/autoReg -* Source code: https://github.com/cran/autoReg -* Date/Publication: 2023-11-14 05:53:27 UTC -* Number of recursive dependencies: 215 +* Version: 2.2.1 +* GitHub: https://github.com/ggobi/ggally +* Source code: https://github.com/cran/GGally +* Date/Publication: 2024-02-14 00:53:32 UTC +* Number of recursive dependencies: 144 -Run `revdepcheck::cloud_details(, "autoReg")` for more info +Run `revdepcheck::cloud_details(, "GGally")` for more info
-## Error before installation - -### Devel +## Newly broken -``` -* using log directory ‘/tmp/workdir/autoReg/new/autoReg.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘autoReg/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK - ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK - ‘Getting_started.Rmd’ using ‘UTF-8’... OK - ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK - ‘Survival.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK +* checking whether package ‘GGally’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/GGally/new/GGally.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘GGally’ ... +** package ‘GGally’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in eval(exprs[i], envir) : object 'is.rel' not found +Error: unable to load R code in package ‘GGally’ +Execution halted +ERROR: lazy loading failed for package ‘GGally’ +* removing ‘/tmp/workdir/GGally/new/GGally.Rcheck/GGally’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/autoReg/old/autoReg.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘autoReg/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK - ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK - ‘Getting_started.Rmd’ using ‘UTF-8’... OK - ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK - ‘Survival.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - +* installing *source* package ‘GGally’ ... +** package ‘GGally’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (GGally) ``` -# AutoScore +# ggmosaic
-* Version: 1.0.0 -* GitHub: https://github.com/nliulab/AutoScore -* Source code: https://github.com/cran/AutoScore -* Date/Publication: 2022-10-15 22:15:26 UTC -* Number of recursive dependencies: 173 +* Version: 0.3.3 +* GitHub: https://github.com/haleyjeppson/ggmosaic +* Source code: https://github.com/cran/ggmosaic +* Date/Publication: 2021-02-23 19:50:02 UTC +* Number of recursive dependencies: 74 -Run `revdepcheck::cloud_details(, "AutoScore")` for more info +Run `revdepcheck::cloud_details(, "ggmosaic")` for more info
-## Error before installation +## Newly broken -### Devel +* checking whether package ‘ggmosaic’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details. + ``` -``` -* using log directory ‘/tmp/workdir/AutoScore/new/AutoScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘AutoScore/DESCRIPTION’ ... OK -... -* this is package ‘AutoScore’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘survAUC’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/AutoScore/old/AutoScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘AutoScore/DESCRIPTION’ ... OK -... -* this is package ‘AutoScore’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘survAUC’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# bartMan - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/bartMan -* Date/Publication: 2024-07-24 12:10:02 UTC -* Number of recursive dependencies: 135 - -Run `revdepcheck::cloud_details(, "bartMan")` for more info - -
- -## Newly broken - -* checking whether package ‘bartMan’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bartMan’ ... -** package ‘bartMan’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in eval(exprs[i], envir) : object 'justify_grobs' not found -Error: unable to load R code in package ‘bartMan’ -Execution halted -ERROR: lazy loading failed for package ‘bartMan’ -* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’ - - -``` -### CRAN - -``` -* installing *source* package ‘bartMan’ ... -** package ‘bartMan’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (bartMan) - - -``` -# bayesDP - -
- -* Version: 1.3.7 -* GitHub: https://github.com/graemeleehickey/bayesDP -* Source code: https://github.com/cran/bayesDP -* Date/Publication: 2025-01-12 11:40:10 UTC -* Number of recursive dependencies: 79 - -Run `revdepcheck::cloud_details(, "bayesDP")` for more info - -
- -## In both - -* checking whether package ‘bayesDP’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bayesDP’ ... -** package ‘bayesDP’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bayesDP/new/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bayesDP’ -* removing ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/bayesDP’ - - -``` -### CRAN - -``` -* installing *source* package ‘bayesDP’ ... -** package ‘bayesDP’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bayesDP/old/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bayesDP’ -* removing ‘/tmp/workdir/bayesDP/old/bayesDP.Rcheck/bayesDP’ - - -``` -# BayesianFactorZoo - -
- -* Version: 0.0.0.3 -* GitHub: NA -* Source code: https://github.com/cran/BayesianFactorZoo -* Date/Publication: 2024-10-04 09:30:08 UTC -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "BayesianFactorZoo")` for more info - -
- -## In both - -* checking whether package ‘BayesianFactorZoo’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BayesianFactorZoo/new/BayesianFactorZoo.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BayesianFactorZoo’ ... -** package ‘BayesianFactorZoo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BayesianFactorZoo’ -* removing ‘/tmp/workdir/BayesianFactorZoo/new/BayesianFactorZoo.Rcheck/BayesianFactorZoo’ - - -``` -### CRAN - -``` -* installing *source* package ‘BayesianFactorZoo’ ... -** package ‘BayesianFactorZoo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BayesianFactorZoo’ -* removing ‘/tmp/workdir/BayesianFactorZoo/old/BayesianFactorZoo.Rcheck/BayesianFactorZoo’ - - -``` -# BayesSurvive - -
- -* Version: 0.0.2 -* GitHub: https://github.com/ocbe-uio/BayesSurvive -* Source code: https://github.com/cran/BayesSurvive -* Date/Publication: 2024-06-04 13:20:12 UTC -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "BayesSurvive")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/BayesSurvive/new/BayesSurvive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BayesSurvive/DESCRIPTION’ ... OK -... -* this is package ‘BayesSurvive’ version ‘0.0.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/BayesSurvive/old/BayesSurvive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BayesSurvive/DESCRIPTION’ ... OK -... -* this is package ‘BayesSurvive’ version ‘0.0.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# BCClong - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/BCClong -* Date/Publication: 2024-06-24 00:00:02 UTC -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "BCClong")` for more info - -
- -## In both - -* checking whether package ‘BCClong’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BCClong’ ... -** package ‘BCClong’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BCClong’ -* removing ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/BCClong’ - - -``` -### CRAN - -``` -* installing *source* package ‘BCClong’ ... -** package ‘BCClong’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BCClong’ -* removing ‘/tmp/workdir/BCClong/old/BCClong.Rcheck/BCClong’ - - -``` -# BGGM - -
- -* Version: 2.1.5 -* GitHub: https://github.com/donaldRwilliams/BGGM -* Source code: https://github.com/cran/BGGM -* Date/Publication: 2024-12-22 21:40:02 UTC -* Number of recursive dependencies: 211 - -Run `revdepcheck::cloud_details(, "BGGM")` for more info - -
- -## In both - -* checking whether package ‘BGGM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BGGM’ ... -** package ‘BGGM’ successfully unpacked and MD5 sums checked -** using staged installation -configure: creating ./config.status -config.status: creating src/Makevars -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c bggm_fast.cpp -o bggm_fast.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BGGM’ -* removing ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/BGGM’ - - -``` -### CRAN - -``` -* installing *source* package ‘BGGM’ ... -** package ‘BGGM’ successfully unpacked and MD5 sums checked -** using staged installation -configure: creating ./config.status -config.status: creating src/Makevars -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c bggm_fast.cpp -o bggm_fast.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BGGM’ -* removing ‘/tmp/workdir/BGGM/old/BGGM.Rcheck/BGGM’ - - -``` -# binsreg - -
- -* Version: 1.1 -* GitHub: NA -* Source code: https://github.com/cran/binsreg -* Date/Publication: 2024-07-23 14:30:01 UTC -* Number of recursive dependencies: 35 - -Run `revdepcheck::cloud_details(, "binsreg")` for more info - -
- -## In both - -* checking whether package ‘binsreg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/binsreg/new/binsreg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘binsreg’ ... -** package ‘binsreg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘binsreg’ -* removing ‘/tmp/workdir/binsreg/new/binsreg.Rcheck/binsreg’ - - -``` -### CRAN - -``` -* installing *source* package ‘binsreg’ ... -** package ‘binsreg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘binsreg’ -* removing ‘/tmp/workdir/binsreg/old/binsreg.Rcheck/binsreg’ - - -``` -# bspcov - -
- -* Version: 1.0.1 -* GitHub: https://github.com/statjs/bspcov -* Source code: https://github.com/cran/bspcov -* Date/Publication: 2024-11-13 20:10:02 UTC -* Number of recursive dependencies: 111 - -Run `revdepcheck::cloud_details(, "bspcov")` for more info - -
- -## In both - -* checking whether package ‘bspcov’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bspcov’ ... -** package ‘bspcov’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bspcov’ -* removing ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/bspcov’ - - -``` -### CRAN - -``` -* installing *source* package ‘bspcov’ ... -** package ‘bspcov’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bspcov’ -* removing ‘/tmp/workdir/bspcov/old/bspcov.Rcheck/bspcov’ - - -``` -# BSTZINB - -
- -* Version: 1.0.1 -* GitHub: https://github.com/SumanM47/BSTZINB -* Source code: https://github.com/cran/BSTZINB -* Date/Publication: 2024-10-31 22:50:02 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "BSTZINB")` for more info - -
- -## In both - -* checking whether package ‘BSTZINB’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BSTZINB’ ... -** package ‘BSTZINB’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BSTZINB’ -* removing ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/BSTZINB’ - - -``` -### CRAN - -``` -* installing *source* package ‘BSTZINB’ ... -** package ‘BSTZINB’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BSTZINB’ -* removing ‘/tmp/workdir/BSTZINB/old/BSTZINB.Rcheck/BSTZINB’ - - -``` -# BuyseTest - -
- -* Version: 3.0.5 -* GitHub: https://github.com/bozenne/BuyseTest -* Source code: https://github.com/cran/BuyseTest -* Date/Publication: 2024-10-13 21:40:02 UTC -* Number of recursive dependencies: 132 - -Run `revdepcheck::cloud_details(, "BuyseTest")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/BuyseTest/new/BuyseTest.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BuyseTest/DESCRIPTION’ ... OK -... -* this is package ‘BuyseTest’ version ‘3.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/BuyseTest/old/BuyseTest.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BuyseTest/DESCRIPTION’ ... OK -... -* this is package ‘BuyseTest’ version ‘3.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# CAESAR.Suite - -
- -* Version: 0.1.0 -* GitHub: https://github.com/XiaoZhangryy/CAESAR.Suite -* Source code: https://github.com/cran/CAESAR.Suite -* Date/Publication: 2024-09-16 14:20:06 UTC -* Number of recursive dependencies: 269 - -Run `revdepcheck::cloud_details(, "CAESAR.Suite")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/CAESAR.Suite/new/CAESAR.Suite.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CAESAR.Suite/DESCRIPTION’ ... OK -... -* this is package ‘CAESAR.Suite’ version ‘0.1.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ProFAST’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/CAESAR.Suite/old/CAESAR.Suite.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘CAESAR.Suite/DESCRIPTION’ ... OK -... -* this is package ‘CAESAR.Suite’ version ‘0.1.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ProFAST’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# CARBayesST - -
- -* Version: 4.0 -* GitHub: https://github.com/duncanplee/CARBayesST -* Source code: https://github.com/cran/CARBayesST -* Date/Publication: 2023-10-30 16:40:02 UTC -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "CARBayesST")` for more info - -
- -## In both - -* checking whether package ‘CARBayesST’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CARBayesST’ ... -** package ‘CARBayesST’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CARBayesST.cpp -o CARBayesST.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CARBayesST.so CARBayesST.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/00LOCK-CARBayesST/00new/CARBayesST/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CARBayesST’ -* removing ‘/tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/CARBayesST’ - - -``` -### CRAN - -``` -* installing *source* package ‘CARBayesST’ ... -** package ‘CARBayesST’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CARBayesST.cpp -o CARBayesST.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CARBayesST.so CARBayesST.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/CARBayesST/old/CARBayesST.Rcheck/00LOCK-CARBayesST/00new/CARBayesST/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CARBayesST’ -* removing ‘/tmp/workdir/CARBayesST/old/CARBayesST.Rcheck/CARBayesST’ - - -``` -# Certara.VPCResults - -
- -* Version: 3.0.2 -* GitHub: NA -* Source code: https://github.com/cran/Certara.VPCResults -* Date/Publication: 2024-12-02 15:30:02 UTC -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "Certara.VPCResults")` for more info - -
- -## In both - -* checking whether package ‘Certara.VPCResults’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Certara.VPCResults’ ... -** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Certara.VPCResults’ -* removing ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/Certara.VPCResults’ - - -``` -### CRAN - -``` -* installing *source* package ‘Certara.VPCResults’ ... -** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Certara.VPCResults’ -* removing ‘/tmp/workdir/Certara.VPCResults/old/Certara.VPCResults.Rcheck/Certara.VPCResults’ - - -``` -# CGPfunctions - -
- -* Version: 0.6.3 -* GitHub: https://github.com/ibecav/CGPfunctions -* Source code: https://github.com/cran/CGPfunctions -* Date/Publication: 2020-11-12 14:50:09 UTC -* Number of recursive dependencies: 155 - -Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info - -
- -## In both - -* checking whether package ‘CGPfunctions’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CGPfunctions’ ... -** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CGPfunctions’ -* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’ - - -``` -### CRAN - -``` -* installing *source* package ‘CGPfunctions’ ... -** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CGPfunctions’ -* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’ - - -``` -# cia - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cia -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "cia")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cinaR - -
- -* Version: 0.2.3 -* GitHub: https://github.com/eonurk/cinaR -* Source code: https://github.com/cran/cinaR -* Date/Publication: 2022-05-18 14:00:09 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "cinaR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/cinaR/new/cinaR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘cinaR/DESCRIPTION’ ... OK -... -* this is package ‘cinaR’ version ‘0.2.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'ChIPseeker', 'fgsea' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/cinaR/old/cinaR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘cinaR/DESCRIPTION’ ... OK -... -* this is package ‘cinaR’ version ‘0.2.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'ChIPseeker', 'fgsea' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# cmprskcoxmsm - -
- -* Version: 0.2.1 -* GitHub: NA -* Source code: https://github.com/cran/cmprskcoxmsm -* Date/Publication: 2021-09-04 05:50:02 UTC -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "cmprskcoxmsm")` for more info - -
- -## In both - -* checking whether package ‘cmprskcoxmsm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘cmprskcoxmsm’ ... -** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘cmprskcoxmsm’ -* removing ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ - - -``` -### CRAN - -``` -* installing *source* package ‘cmprskcoxmsm’ ... -** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘cmprskcoxmsm’ -* removing ‘/tmp/workdir/cmprskcoxmsm/old/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ - - -``` -# COMMA - -
- -* Version: 1.1.1 -* GitHub: NA -* Source code: https://github.com/cran/COMMA -* Date/Publication: 2024-12-13 21:10:02 UTC -* Number of recursive dependencies: 72 - -Run `revdepcheck::cloud_details(, "COMMA")` for more info - -
- -## In both - -* checking whether package ‘COMMA’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘COMMA’ ... -** package ‘COMMA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘COMMA’ -* removing ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/COMMA’ - - -``` -### CRAN - -``` -* installing *source* package ‘COMMA’ ... -** package ‘COMMA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘COMMA’ -* removing ‘/tmp/workdir/COMMA/old/COMMA.Rcheck/COMMA’ - - -``` -# contsurvplot - -
- -* Version: 0.2.1 -* GitHub: https://github.com/RobinDenz1/contsurvplot -* Source code: https://github.com/cran/contsurvplot -* Date/Publication: 2023-08-15 08:00:03 UTC -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "contsurvplot")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/contsurvplot/new/contsurvplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘contsurvplot/DESCRIPTION’ ... OK -... -* this is package ‘contsurvplot’ version ‘0.2.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/contsurvplot/old/contsurvplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘contsurvplot/DESCRIPTION’ ... OK -... -* this is package ‘contsurvplot’ version ‘0.2.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# counterfactuals - -
- -* Version: 0.1.6 -* GitHub: https://github.com/dandls/counterfactuals -* Source code: https://github.com/cran/counterfactuals -* Date/Publication: 2024-10-17 12:00:06 UTC -* Number of recursive dependencies: 217 - -Run `revdepcheck::cloud_details(, "counterfactuals")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/counterfactuals/new/counterfactuals.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘counterfactuals/DESCRIPTION’ ... OK -... -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK - ‘introduction.html.asis’ using ‘UTF-8’... OK - ‘other_models.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/counterfactuals/old/counterfactuals.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘counterfactuals/DESCRIPTION’ ... OK -... -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK - ‘introduction.html.asis’ using ‘UTF-8’... OK - ‘other_models.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# CRMetrics - -
- -* Version: 0.3.2 -* GitHub: https://github.com/khodosevichlab/CRMetrics -* Source code: https://github.com/cran/CRMetrics -* Date/Publication: 2024-11-08 00:20:06 UTC -* Number of recursive dependencies: 242 - -Run `revdepcheck::cloud_details(, "CRMetrics")` for more info - -
- -## In both - -* checking whether package ‘CRMetrics’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CRMetrics’ ... -** package ‘CRMetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CRMetrics’ -* removing ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/CRMetrics’ - - -``` -### CRAN - -``` -* installing *source* package ‘CRMetrics’ ... -** package ‘CRMetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CRMetrics’ -* removing ‘/tmp/workdir/CRMetrics/old/CRMetrics.Rcheck/CRMetrics’ - - -``` -# ctsem - -
- -* Version: 3.10.2 -* GitHub: https://github.com/cdriveraus/ctsem -* Source code: https://github.com/cran/ctsem -* Date/Publication: 2025-01-13 11:00:08 UTC -* Number of recursive dependencies: 160 - -Run `revdepcheck::cloud_details(, "ctsem")` for more info - -
- -## In both - -* checking whether package ‘ctsem’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ - - -``` -### CRAN - -``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ - - -``` -# dartR.base - -
- -* Version: 0.98 -* GitHub: NA -* Source code: https://github.com/cran/dartR.base -* Date/Publication: 2024-09-19 13:20:02 UTC -* Number of recursive dependencies: 288 - -Run `revdepcheck::cloud_details(, "dartR.base")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.base/new/dartR.base.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.base/DESCRIPTION’ ... OK -... -* this is package ‘dartR.base’ version ‘0.98’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SNPassoc’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.base/old/dartR.base.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.base/DESCRIPTION’ ... OK -... -* this is package ‘dartR.base’ version ‘0.98’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SNPassoc’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.captive - -
- -* Version: 0.75 -* GitHub: NA -* Source code: https://github.com/cran/dartR.captive -* Date/Publication: 2023-11-27 17:10:09 UTC -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "dartR.captive")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.captive/new/dartR.captive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.captive/DESCRIPTION’ ... OK -... -* this is package ‘dartR.captive’ version ‘0.75’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.captive/old/dartR.captive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.captive/DESCRIPTION’ ... OK -... -* this is package ‘dartR.captive’ version ‘0.75’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.popgen - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/dartR.popgen -* Date/Publication: 2024-06-27 23:20:04 UTC -* Number of recursive dependencies: 175 - -Run `revdepcheck::cloud_details(, "dartR.popgen")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.popgen/new/dartR.popgen.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK -... -* this is package ‘dartR.popgen’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.popgen/old/dartR.popgen.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK -... -* this is package ‘dartR.popgen’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.sexlinked - -
- -* Version: 1.0.5 -* GitHub: NA -* Source code: https://github.com/cran/dartR.sexlinked -* Date/Publication: 2024-06-24 15:40:02 UTC -* Number of recursive dependencies: 120 - -Run `revdepcheck::cloud_details(, "dartR.sexlinked")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.sexlinked/new/dartR.sexlinked.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sexlinked/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sexlinked’ version ‘1.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.sexlinked/old/dartR.sexlinked.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sexlinked/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sexlinked’ version ‘1.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.sim - -
- -* Version: 0.70 -* GitHub: https://github.com/green-striped-gecko/dartR.sim -* Source code: https://github.com/cran/dartR.sim -* Date/Publication: 2023-11-20 19:30:02 UTC -* Number of recursive dependencies: 133 - -Run `revdepcheck::cloud_details(, "dartR.sim")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.sim/new/dartR.sim.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sim/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sim’ version ‘0.70’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.sim/old/dartR.sim.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sim/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sim’ version ‘0.70’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.spatial - -
- -* Version: 0.78 -* GitHub: NA -* Source code: https://github.com/cran/dartR.spatial -* Date/Publication: 2023-11-15 00:50:02 UTC -* Number of recursive dependencies: 168 - -Run `revdepcheck::cloud_details(, "dartR.spatial")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.spatial/new/dartR.spatial.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.spatial/DESCRIPTION’ ... OK -... -* this is package ‘dartR.spatial’ version ‘0.78’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.spatial/old/dartR.spatial.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.spatial/DESCRIPTION’ ... OK -... -* this is package ‘dartR.spatial’ version ‘0.78’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# DepthProc - -
- -* Version: 2.1.5 -* GitHub: https://github.com/zzawadz/DepthProc -* Source code: https://github.com/cran/DepthProc -* Date/Publication: 2022-02-03 20:30:02 UTC -* Number of recursive dependencies: 133 - -Run `revdepcheck::cloud_details(, "DepthProc")` for more info - -
- -## In both - -* checking whether package ‘DepthProc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/new/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/DepthProc’ - - -``` -### CRAN - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/old/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/old/DepthProc.Rcheck/DepthProc’ - - -``` -# DFD - -
- -* Version: 0.2.0 -* GitHub: https://github.com/MohmedSoudy/DFD -* Source code: https://github.com/cran/DFD -* Date/Publication: 2024-08-28 18:20:02 UTC -* Number of recursive dependencies: 207 - -Run `revdepcheck::cloud_details(, "DFD")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/DFD/new/DFD.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DFD/DESCRIPTION’ ... OK -... -* this is package ‘DFD’ version ‘0.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘signatureSearch’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/DFD/old/DFD.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DFD/DESCRIPTION’ ... OK -... -* this is package ‘DFD’ version ‘0.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘signatureSearch’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dMrs - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/dMrs -* Date/Publication: 2025-01-21 15:40:05 UTC -* Number of recursive dependencies: 137 - -Run `revdepcheck::cloud_details(, "dMrs")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dMrs/new/dMrs.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dMrs/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... NONE -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dMrs.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dMrs/old/dMrs.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dMrs/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... NONE -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dMrs.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# DR.SC - -
- -* Version: 3.4 -* GitHub: https://github.com/feiyoung/DR.SC -* Source code: https://github.com/cran/DR.SC -* Date/Publication: 2024-03-19 08:40:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "DR.SC")` for more info - -
- -## In both - -* checking whether package ‘DR.SC’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DR.SC’ ... -** package ‘DR.SC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘DR.SC’ -* removing ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/DR.SC’ - - -``` -### CRAN - -``` -* installing *source* package ‘DR.SC’ ... -** package ‘DR.SC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘DR.SC’ -* removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’ - - -``` -# dscoreMSM - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/dscoreMSM -* Date/Publication: 2024-12-13 16:40:02 UTC -* Number of recursive dependencies: 121 - -Run `revdepcheck::cloud_details(, "dscoreMSM")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dscoreMSM/new/dscoreMSM.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dscoreMSM/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dscoreMSM.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dscoreMSM/old/dscoreMSM.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dscoreMSM/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dscoreMSM.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# DynForest - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/DynForest -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "DynForest")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# easybgm - -
- -* Version: 0.2.1 -* GitHub: https://github.com/KarolineHuth/easybgm -* Source code: https://github.com/cran/easybgm -* Date/Publication: 2024-10-17 08:30:02 UTC -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "easybgm")` for more info - -
- -## In both - -* checking whether package ‘easybgm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘easybgm’ ... -** package ‘easybgm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘easybgm’ -* removing ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/easybgm’ - - -``` -### CRAN - -``` -* installing *source* package ‘easybgm’ ... -** package ‘easybgm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘easybgm’ -* removing ‘/tmp/workdir/easybgm/old/easybgm.Rcheck/easybgm’ - - -``` -# EcoEnsemble - -
- -* Version: 1.1.0 -* GitHub: https://github.com/CefasRepRes/EcoEnsemble -* Source code: https://github.com/cran/EcoEnsemble -* Date/Publication: 2024-08-19 17:20:06 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info - -
- -## In both - -* checking whether package ‘EcoEnsemble’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ - - -``` -### CRAN - -``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ - - -``` -# ecolottery - -
- -* Version: 1.0.0 -* GitHub: https://github.com/frmunoz/ecolottery -* Source code: https://github.com/cran/ecolottery -* Date/Publication: 2017-07-03 11:01:29 UTC -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "ecolottery")` for more info - -
- -## In both - -* checking whether package ‘ecolottery’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ - - -``` -### CRAN - -``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ - - -``` -# EpiEstim - -
- -* Version: 2.2-4 -* GitHub: https://github.com/mrc-ide/EpiEstim -* Source code: https://github.com/cran/EpiEstim -* Date/Publication: 2021-01-07 16:20:10 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "EpiEstim")` for more info - -
- -## In both - -* checking whether package ‘EpiEstim’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’ - - -``` -### CRAN - -``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’ - - -``` -# evolqg - -
- -* Version: 0.3-4 -* GitHub: https://github.com/lem-usp/evolqg -* Source code: https://github.com/cran/evolqg -* Date/Publication: 2023-12-05 15:20:12 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "evolqg")` for more info - -
- -## In both - -* checking whether package ‘evolqg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/new/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/evolqg’ - - -``` -### CRAN - -``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/old/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/old/evolqg.Rcheck/evolqg’ - - -``` -# EWSmethods - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/EWSmethods -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "EWSmethods")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# flexrsurv - -
- -* Version: 2.0.18 -* GitHub: NA -* Source code: https://github.com/cran/flexrsurv -* Date/Publication: 2024-02-09 16:10:02 UTC -* Number of recursive dependencies: 129 - -Run `revdepcheck::cloud_details(, "flexrsurv")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/flexrsurv/new/flexrsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘flexrsurv/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/flexrsurv/old/flexrsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘flexrsurv/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -# fmx - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/fmx -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "fmx")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ForecastComb - -
- -* Version: 1.3.1 -* GitHub: https://github.com/ceweiss/ForecastComb -* Source code: https://github.com/cran/ForecastComb -* Date/Publication: 2018-08-07 13:50:08 UTC -* Number of recursive dependencies: 73 - -Run `revdepcheck::cloud_details(, "ForecastComb")` for more info - -
- -## In both - -* checking whether package ‘ForecastComb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/ForecastComb’ - - -``` -### CRAN - -``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/old/ForecastComb.Rcheck/ForecastComb’ - - -``` -# gap - -
- -* Version: 1.6 -* GitHub: https://github.com/jinghuazhao/R -* Source code: https://github.com/cran/gap -* Date/Publication: 2024-08-27 04:40:06 UTC -* Number of recursive dependencies: 177 - -Run `revdepcheck::cloud_details(, "gap")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/gap/new/gap.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘gap/DESCRIPTION’ ... OK -... ---- failed re-building ‘jss.Rnw’ - -SUMMARY: processing the following file failed: - ‘jss.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 4 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/gap/old/gap.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘gap/DESCRIPTION’ ... OK -... ---- failed re-building ‘jss.Rnw’ - -SUMMARY: processing the following file failed: - ‘jss.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 4 NOTEs - - - - - -``` -# gapfill - -
- -* Version: 0.9.6-1 -* GitHub: https://github.com/florafauna/gapfill -* Source code: https://github.com/cran/gapfill -* Date/Publication: 2021-02-12 10:10:05 UTC -* Number of recursive dependencies: 70 - -Run `revdepcheck::cloud_details(, "gapfill")` for more info - -
- -## In both - -* checking whether package ‘gapfill’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Packages which this enhances but not available for checking: - 'raster', 'doParallel', 'doMPI' - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/new/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/gapfill’ - - -``` -### CRAN - -``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/old/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/old/gapfill.Rcheck/gapfill’ - - -``` -# genekitr - -
- -* Version: 1.2.8 -* GitHub: https://github.com/GangLiLab/genekitr -* Source code: https://github.com/cran/genekitr -* Date/Publication: 2024-09-06 13:00:06 UTC -* Number of recursive dependencies: 199 - -Run `revdepcheck::cloud_details(, "genekitr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘genekitr/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -Package suggested but not available for checking: ‘fgsea’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘genekitr/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -Package suggested but not available for checking: ‘fgsea’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# GeneSelectR - -
- -* Version: 1.0.1 -* GitHub: https://github.com/dzhakparov/GeneSelectR -* Source code: https://github.com/cran/GeneSelectR -* Date/Publication: 2024-02-03 14:00:05 UTC -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "GeneSelectR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/GeneSelectR/new/GeneSelectR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK -... -+ build_vignettes = FALSE) - - When sourcing ‘example.R’: -Error: there is no package called ‘devtools’ -Execution halted - - ‘example.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/GeneSelectR/old/GeneSelectR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK -... -+ build_vignettes = FALSE) - - When sourcing ‘example.R’: -Error: there is no package called ‘devtools’ -Execution halted - - ‘example.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 1 NOTE - - - - - -``` -# GeomComb - -
- -* Version: 1.0 -* GitHub: https://github.com/ceweiss/GeomComb -* Source code: https://github.com/cran/GeomComb -* Date/Publication: 2016-11-27 16:02:26 -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "GeomComb")` for more info - -
- -## In both - -* checking whether package ‘GeomComb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/GeomComb’ - - -``` -### CRAN - -``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/old/GeomComb.Rcheck/GeomComb’ - - -``` -# geomorph - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/geomorph -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "geomorph")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GeoTox - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GeoTox -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "GeoTox")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggtern - -
- -* Version: 3.5.0 -* GitHub: NA -* Source code: https://github.com/cran/ggtern -* Date/Publication: 2024-03-24 21:50:02 UTC -* Number of recursive dependencies: 42 - -Run `revdepcheck::cloud_details(, "ggtern")` for more info - -
- -## Newly broken - -* checking whether package ‘ggtern’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘chemometrics’ - ``` - -## In both - -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘sp’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'update_guides' not found -Error: unable to load R code in package ‘ggtern’ -Execution halted -ERROR: lazy loading failed for package ‘ggtern’ -* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ - - -``` -### CRAN - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (ggtern) - - -``` -# ggThemeAssist - -
- -* Version: 0.1.5 -* GitHub: https://github.com/calligross/ggthemeassist -* Source code: https://github.com/cran/ggThemeAssist -* Date/Publication: 2016-08-13 16:50:55 -* Number of recursive dependencies: 57 - -Run `revdepcheck::cloud_details(, "ggThemeAssist")` for more info - -
- -## Newly broken - -* checking whether package ‘ggThemeAssist’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggThemeAssist/new/ggThemeAssist.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking LazyData ... NOTE - ``` - 'LazyData' is specified without a 'data' directory - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ggThemeAssist’ ... -** package ‘ggThemeAssist’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in is.element("extrafont", installed.packages()[, 1]) : - unused argument (installed.packages()[, 1]) -Error: unable to load R code in package ‘ggThemeAssist’ -Execution halted -ERROR: lazy loading failed for package ‘ggThemeAssist’ -* removing ‘/tmp/workdir/ggThemeAssist/new/ggThemeAssist.Rcheck/ggThemeAssist’ - - -``` -### CRAN - -``` -* installing *source* package ‘ggThemeAssist’ ... -** package ‘ggThemeAssist’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (ggThemeAssist) - - -``` -# gJLS2 - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/gJLS2 -* Date/Publication: 2021-09-30 09:00:05 UTC -* Number of recursive dependencies: 45 - -Run `revdepcheck::cloud_details(, "gJLS2")` for more info - -
- -## In both - -* checking whether package ‘gJLS2’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gJLS2’ ... -** package ‘gJLS2’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gJLS2’ -* removing ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/gJLS2’ - - -``` -### CRAN - -``` -* installing *source* package ‘gJLS2’ ... -** package ‘gJLS2’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gJLS2’ -* removing ‘/tmp/workdir/gJLS2/old/gJLS2.Rcheck/gJLS2’ - - -``` -# grandR - -
- -* Version: 0.2.6 -* GitHub: https://github.com/erhard-lab/grandR -* Source code: https://github.com/cran/grandR -* Date/Publication: 2025-01-22 22:10:02 UTC -* Number of recursive dependencies: 265 - -Run `revdepcheck::cloud_details(, "grandR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# GseaVis - -
- -* Version: 0.0.5 -* GitHub: https://github.com/junjunlab/GseaVis -* Source code: https://github.com/cran/GseaVis -* Date/Publication: 2022-12-20 19:40:07 UTC -* Number of recursive dependencies: 104 - -Run `revdepcheck::cloud_details(, "GseaVis")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/GseaVis/new/GseaVis.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GseaVis/DESCRIPTION’ ... OK -... -* this is package ‘GseaVis’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘DOSE’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/GseaVis/old/GseaVis.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GseaVis/DESCRIPTION’ ... OK -... -* this is package ‘GseaVis’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘DOSE’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# hettx - -
- -* Version: 0.1.3 -* GitHub: https://github.com/bfifield/hettx -* Source code: https://github.com/cran/hettx -* Date/Publication: 2023-08-19 22:22:34 UTC -* Number of recursive dependencies: 84 - -Run `revdepcheck::cloud_details(, "hettx")` for more info - -
- -## In both - -* checking whether package ‘hettx’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ - - -``` -### CRAN - -``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ - - -``` -# Hmisc - -
- -* Version: 5.2-2 -* GitHub: NA -* Source code: https://github.com/cran/Hmisc -* Date/Publication: 2025-01-10 23:30:03 UTC -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "Hmisc")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/Hmisc/new/Hmisc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Hmisc/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/Hmisc/old/Hmisc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Hmisc/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -# Hmsc - -
- -* Version: 3.0-13 -* GitHub: https://github.com/hmsc-r/HMSC -* Source code: https://github.com/cran/Hmsc -* Date/Publication: 2022-08-11 14:10:14 UTC -* Number of recursive dependencies: 75 - -Run `revdepcheck::cloud_details(, "Hmsc")` for more info - -
- -## In both - -* checking whether package ‘Hmsc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/Hmsc’ - - -``` -### CRAN - -``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/old/Hmsc.Rcheck/Hmsc’ - - -``` -# iClusterVB - -
- -* Version: 0.1.4 -* GitHub: https://github.com/AbdalkarimA/iClusterVB -* Source code: https://github.com/cran/iClusterVB -* Date/Publication: 2024-12-09 19:50:06 UTC -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "iClusterVB")` for more info - -
- -## In both - -* checking whether package ‘iClusterVB’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iClusterVB’ ... -** package ‘iClusterVB’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iClusterVB’ -* removing ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/iClusterVB’ - - -``` -### CRAN - -``` -* installing *source* package ‘iClusterVB’ ... -** package ‘iClusterVB’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iClusterVB’ -* removing ‘/tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/iClusterVB’ - - -``` -# immcp - -
- -* Version: 1.0.3 -* GitHub: https://github.com/YuanlongHu/immcp -* Source code: https://github.com/cran/immcp -* Date/Publication: 2022-05-12 05:50:02 UTC -* Number of recursive dependencies: 187 - -Run `revdepcheck::cloud_details(, "immcp")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -... -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'clusterProfiler', 'DOSE' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -... -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'clusterProfiler', 'DOSE' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# inventorize - -
- -* Version: 1.1.1 -* GitHub: NA -* Source code: https://github.com/cran/inventorize -* Date/Publication: 2022-05-31 22:20:09 UTC -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "inventorize")` for more info - -
- -## Newly broken - -* checking whether package ‘inventorize’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘inventorize’ ... -** package ‘inventorize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in pm[[2]] : subscript out of bounds -Error: unable to load R code in package ‘inventorize’ -Execution halted -ERROR: lazy loading failed for package ‘inventorize’ -* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ - - -``` -### CRAN - -``` -* installing *source* package ‘inventorize’ ... -** package ‘inventorize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Warning in qgamma(service_level, alpha, beta) : NaNs produced -Warning in qgamma(service_level, alpha, beta) : NaNs produced -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (inventorize) - - -``` -# invivoPKfit - -
- -* Version: 2.0.0 -* GitHub: NA -* Source code: https://github.com/cran/invivoPKfit -* Date/Publication: 2025-01-09 14:30:02 UTC -* Number of recursive dependencies: 172 - -Run `revdepcheck::cloud_details(, "invivoPKfit")` for more info - -
- -## In both - -* checking whether package ‘invivoPKfit’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘invivoPKfit’ ... -** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘expand1’ is not exported by 'namespace:Matrix' -Execution halted -ERROR: lazy loading failed for package ‘invivoPKfit’ -* removing ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/invivoPKfit’ - - -``` -### CRAN - -``` -* installing *source* package ‘invivoPKfit’ ... -** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘expand1’ is not exported by 'namespace:Matrix' -Execution halted -ERROR: lazy loading failed for package ‘invivoPKfit’ -* removing ‘/tmp/workdir/invivoPKfit/old/invivoPKfit.Rcheck/invivoPKfit’ - - -``` -# iNZightPlots - -
- -* Version: 2.15.3 -* GitHub: https://github.com/iNZightVIT/iNZightPlots -* Source code: https://github.com/cran/iNZightPlots -* Date/Publication: 2023-10-14 05:00:02 UTC -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info - -
- -## In both - -* checking whether package ‘iNZightPlots’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’ - - -``` -### CRAN - -``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’ - - -``` -# iNZightRegression - -
- -* Version: 1.3.4 -* GitHub: https://github.com/iNZightVIT/iNZightRegression -* Source code: https://github.com/cran/iNZightRegression -* Date/Publication: 2024-04-05 02:32:59 UTC -* Number of recursive dependencies: 162 - -Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info - -
- -## In both - -* checking whether package ‘iNZightRegression’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’ - - -``` -### CRAN - -``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’ - - -``` -# IRexamples - -
- -* Version: 0.0.4 -* GitHub: https://github.com/vinhdizzo/IRexamples -* Source code: https://github.com/cran/IRexamples -* Date/Publication: 2023-10-06 06:40:02 UTC -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "IRexamples")` for more info - -
- -## In both - -* checking whether package ‘IRexamples’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/IRexamples’ - - -``` -### CRAN - -``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/old/IRexamples.Rcheck/IRexamples’ - - -``` -# jmBIG - -
- -* Version: 0.1.3 -* GitHub: NA -* Source code: https://github.com/cran/jmBIG -* Date/Publication: 2025-01-19 21:00:02 UTC -* Number of recursive dependencies: 187 - -Run `revdepcheck::cloud_details(, "jmBIG")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/jmBIG/new/jmBIG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jmBIG/DESCRIPTION’ ... OK -... -* checking if there is a namespace ... OK -* checking for executable files ... OK -* checking for hidden files and directories ... OK -* checking for portable file names ... OK -* checking for sufficient/correct file permissions ... OK -* checking whether package ‘jmBIG’ can be installed ... ERROR -Installation failed. -See ‘/tmp/workdir/jmBIG/new/jmBIG.Rcheck/00install.out’ for details. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/jmBIG/old/jmBIG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jmBIG/DESCRIPTION’ ... OK -... -* checking if there is a namespace ... OK -* checking for executable files ... OK -* checking for hidden files and directories ... OK -* checking for portable file names ... OK -* checking for sufficient/correct file permissions ... OK -* checking whether package ‘jmBIG’ can be installed ... ERROR -Installation failed. -See ‘/tmp/workdir/jmBIG/old/jmBIG.Rcheck/00install.out’ for details. -* DONE -Status: 1 ERROR - - - - - -``` -# joineRML - -
- -* Version: 0.4.6 -* GitHub: https://github.com/graemeleehickey/joineRML -* Source code: https://github.com/cran/joineRML -* Date/Publication: 2023-01-20 04:50:02 UTC -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "joineRML")` for more info - -
- -## In both - -* checking whether package ‘joineRML’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’ - - -``` -### CRAN - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’ - - -``` -# jsmodule - -
- -* Version: 1.6.1 -* GitHub: https://github.com/jinseob2kim/jsmodule -* Source code: https://github.com/cran/jsmodule -* Date/Publication: 2025-01-08 13:10:02 UTC -* Number of recursive dependencies: 241 - -Run `revdepcheck::cloud_details(, "jsmodule")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/jsmodule/new/jsmodule.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jsmodule/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘jsmodule.Rmd’ using ‘UTF-8’... OK - ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/jsmodule/old/jsmodule.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jsmodule/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘jsmodule.Rmd’ using ‘UTF-8’... OK - ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# kmc - -
- -* Version: 0.4-2 -* GitHub: https://github.com/yfyang86/kmc -* Source code: https://github.com/cran/kmc -* Date/Publication: 2022-11-22 08:30:02 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "kmc")` for more info - -
- -## In both - -* checking whether package ‘kmc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/kmc/new/kmc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/new/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/new/kmc.Rcheck/kmc’ - - -``` -### CRAN - -``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/old/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/old/kmc.Rcheck/kmc’ - - -``` -# KMunicate - -
- -* Version: 0.2.5 -* GitHub: https://github.com/ellessenne/KMunicate-package -* Source code: https://github.com/cran/KMunicate -* Date/Publication: 2024-05-16 11:50:08 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "KMunicate")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/KMunicate/new/KMunicate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘KMunicate/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘KMunicate.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/KMunicate/old/KMunicate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘KMunicate/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘KMunicate.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# L2E - -
- -* Version: 2.0 -* GitHub: NA -* Source code: https://github.com/cran/L2E -* Date/Publication: 2022-09-08 21:13:00 UTC -* Number of recursive dependencies: 65 - -Run `revdepcheck::cloud_details(, "L2E")` for more info - -
- -## In both - -* checking whether package ‘L2E’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘L2E’ ... -** package ‘L2E’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required -Execution halted -ERROR: lazy loading failed for package ‘L2E’ -* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’ - - -``` -### CRAN - -``` -* installing *source* package ‘L2E’ ... -** package ‘L2E’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required -Execution halted -ERROR: lazy loading failed for package ‘L2E’ -* removing ‘/tmp/workdir/L2E/old/L2E.Rcheck/L2E’ - - -``` -# Landmarking - -
- -* Version: 1.0.0 -* GitHub: https://github.com/isobelbarrott/Landmarking -* Source code: https://github.com/cran/Landmarking -* Date/Publication: 2022-02-15 20:00:07 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "Landmarking")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/Landmarking/new/Landmarking.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Landmarking/DESCRIPTION’ ... OK -... -* this is package ‘Landmarking’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/Landmarking/old/Landmarking.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Landmarking/DESCRIPTION’ ... OK -... -* this is package ‘Landmarking’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# lavaSearch2 - -
- -* Version: 2.0.3 -* GitHub: https://github.com/bozenne/lavaSearch2 -* Source code: https://github.com/cran/lavaSearch2 -* Date/Publication: 2024-02-23 09:10:02 UTC -* Number of recursive dependencies: 149 - -Run `revdepcheck::cloud_details(, "lavaSearch2")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/lavaSearch2/new/lavaSearch2.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘overview.pdf.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/lavaSearch2/old/lavaSearch2.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘overview.pdf.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# llbayesireg - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/llbayesireg -* Date/Publication: 2019-04-04 16:20:03 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "llbayesireg")` for more info - -
- -## In both - -* checking whether package ‘llbayesireg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘llbayesireg’ ... -** package ‘llbayesireg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘llbayesireg’ -* removing ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/llbayesireg’ - - -``` -### CRAN - -``` -* installing *source* package ‘llbayesireg’ ... -** package ‘llbayesireg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘llbayesireg’ -* removing ‘/tmp/workdir/llbayesireg/old/llbayesireg.Rcheck/llbayesireg’ - - -``` -# lnmixsurv - -
- -* Version: 3.1.6 -* GitHub: NA -* Source code: https://github.com/cran/lnmixsurv -* Date/Publication: 2024-09-03 15:20:08 UTC -* Number of recursive dependencies: 195 - -Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/lnmixsurv/new/lnmixsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK -... ---- finished re-building ‘parallel_computation.Rmd’ - -SUMMARY: processing the following file failed: - ‘expectation_maximization.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 2 ERRORs, 5 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/lnmixsurv/old/lnmixsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘compare.Rmd’ using ‘UTF-8’... OK - ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK - ‘intercept_only.Rmd’ using ‘UTF-8’... OK - ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK - ‘parallel_computation.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -# LorenzRegression - -
- -* Version: 2.1.0 -* GitHub: https://github.com/AlJacq/LorenzRegression -* Source code: https://github.com/cran/LorenzRegression -* Date/Publication: 2024-10-11 16:50:02 UTC -* Number of recursive dependencies: 83 - -Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info - -
- -## In both - -* checking whether package ‘LorenzRegression’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘LorenzRegression’ ... -** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘LorenzRegression’ -* removing ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/LorenzRegression’ - - -``` -### CRAN - -``` -* installing *source* package ‘LorenzRegression’ ... -** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘LorenzRegression’ -* removing ‘/tmp/workdir/LorenzRegression/old/LorenzRegression.Rcheck/LorenzRegression’ - - -``` -# lsirm12pl - -
- -* Version: 1.3.3 -* GitHub: NA -* Source code: https://github.com/cran/lsirm12pl -* Date/Publication: 2024-08-28 23:00:02 UTC -* Number of recursive dependencies: 123 - -Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info - -
- -## In both - -* checking whether package ‘lsirm12pl’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ - - -``` -### CRAN - -``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ - - -``` -# MantaID - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MantaID -* Number of recursive dependencies: 157 - -Run `revdepcheck::cloud_details(, "MantaID")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MARVEL - -
- -* Version: 1.4.0 -* GitHub: NA -* Source code: https://github.com/cran/MARVEL -* Date/Publication: 2022-10-31 10:22:50 UTC -* Number of recursive dependencies: 229 - -Run `revdepcheck::cloud_details(, "MARVEL")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MARVEL/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MARVEL.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MARVEL/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MARVEL.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# MaxWiK - -
- -* Version: 1.0.5 -* GitHub: NA -* Source code: https://github.com/cran/MaxWiK -* Date/Publication: 2024-11-25 11:40:13 UTC -* Number of recursive dependencies: 57 - -Run `revdepcheck::cloud_details(, "MaxWiK")` for more info - -
- -## In both - -* checking whether package ‘MaxWiK’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/MaxWiK/new/MaxWiK.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘MaxWiK’ ... -** package ‘MaxWiK’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MaxWiK’ -* removing ‘/tmp/workdir/MaxWiK/new/MaxWiK.Rcheck/MaxWiK’ - - -``` -### CRAN - -``` -* installing *source* package ‘MaxWiK’ ... -** package ‘MaxWiK’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MaxWiK’ -* removing ‘/tmp/workdir/MaxWiK/old/MaxWiK.Rcheck/MaxWiK’ - - -``` -# mbsts - -
- -* Version: 3.0 -* GitHub: NA -* Source code: https://github.com/cran/mbsts -* Date/Publication: 2023-01-07 01:10:02 UTC -* Number of recursive dependencies: 81 - -Run `revdepcheck::cloud_details(, "mbsts")` for more info - -
- -## In both - -* checking whether package ‘mbsts’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ - - -``` -### CRAN - -``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ - - -``` -# MendelianRandomization - -
- -* Version: 0.10.0 -* GitHub: NA -* Source code: https://github.com/cran/MendelianRandomization -* Date/Publication: 2024-04-12 10:10:02 UTC -* Number of recursive dependencies: 88 - -Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info - -
- -## In both - -* checking whether package ‘MendelianRandomization’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/MendelianRandomization’ - - -``` -### CRAN - -``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/MendelianRandomization’ - - -``` -# miWQS - -
- -* Version: 0.4.4 -* GitHub: https://github.com/phargarten2/miWQS -* Source code: https://github.com/cran/miWQS -* Date/Publication: 2021-04-02 21:50:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "miWQS")` for more info - -
- -## In both - -* checking whether package ‘miWQS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘wqs’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ - - -``` -### CRAN - -``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ - - -``` -# mlmts - -
- -* Version: 1.1.2 -* GitHub: NA -* Source code: https://github.com/cran/mlmts -* Date/Publication: 2024-08-18 08:40:06 UTC -* Number of recursive dependencies: 244 - -Run `revdepcheck::cloud_details(, "mlmts")` for more info - -
- -## In both - -* checking whether package ‘mlmts’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ -Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/mlmts’ - - -``` -### CRAN - -``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ -Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/old/mlmts.Rcheck/mlmts’ - - -``` -# mlr - -
- -* Version: 2.19.2 -* GitHub: https://github.com/mlr-org/mlr -* Source code: https://github.com/cran/mlr -* Date/Publication: 2024-06-12 10:50:02 UTC -* Number of recursive dependencies: 365 - -Run `revdepcheck::cloud_details(, "mlr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/mlr/new/mlr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mlr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘mlr.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 3 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/mlr/old/mlr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mlr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘mlr.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# MRZero - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/MRZero -* Date/Publication: 2024-04-14 09:30:03 UTC -* Number of recursive dependencies: 82 - -Run `revdepcheck::cloud_details(, "MRZero")` for more info - -
- -## In both - -* checking whether package ‘MRZero’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘MRZero’ ... -** package ‘MRZero’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MRZero’ -* removing ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/MRZero’ - - -``` -### CRAN - -``` -* installing *source* package ‘MRZero’ ... -** package ‘MRZero’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MRZero’ -* removing ‘/tmp/workdir/MRZero/old/MRZero.Rcheck/MRZero’ - - -``` -# mstate - -
- -* Version: 0.3.3 -* GitHub: https://github.com/hputter/mstate -* Source code: https://github.com/cran/mstate -* Date/Publication: 2024-07-11 21:30:06 UTC -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "mstate")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/mstate/new/mstate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mstate/DESCRIPTION’ ... OK -... ---- failed re-building ‘Tutorial.Rnw’ - -SUMMARY: processing the following file failed: - ‘Tutorial.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/mstate/old/mstate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mstate/DESCRIPTION’ ... OK -... ---- failed re-building ‘Tutorial.Rnw’ - -SUMMARY: processing the following file failed: - ‘Tutorial.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 NOTE - - - - - -``` -# multilevelTools - -
- -* Version: 0.1.1 -* GitHub: https://github.com/JWiley/multilevelTools -* Source code: https://github.com/cran/multilevelTools -* Date/Publication: 2020-03-04 09:50:02 UTC -* Number of recursive dependencies: 170 - -Run `revdepcheck::cloud_details(, "multilevelTools")` for more info - -
- -## In both - -* checking whether package ‘multilevelTools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’ - - -``` -### CRAN - -``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’ - - -``` -# multinma - -
- -* Version: 0.7.2 -* GitHub: https://github.com/dmphillippo/multinma -* Source code: https://github.com/cran/multinma -* Date/Publication: 2024-09-16 12:20:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "multinma")` for more info - -
- -## In both - -* checking whether package ‘multinma’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ - - -``` -### CRAN - -``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ - - -``` -# multipleOutcomes - -
- -* Version: 0.4 -* GitHub: NA -* Source code: https://github.com/cran/multipleOutcomes -* Date/Publication: 2024-05-30 15:00:03 UTC -* Number of recursive dependencies: 176 - -Run `revdepcheck::cloud_details(, "multipleOutcomes")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/multipleOutcomes/new/multipleOutcomes.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘multipleOutcomes/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘test.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/multipleOutcomes/old/multipleOutcomes.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘multipleOutcomes/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘test.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# MuPETFlow - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/MuPETFlow -* Date/Publication: 2025-01-15 19:40:19 UTC -* Number of recursive dependencies: 85 - -Run `revdepcheck::cloud_details(, "MuPETFlow")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/MuPETFlow/new/MuPETFlow.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MuPETFlow/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MuPETFlow.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/MuPETFlow/old/MuPETFlow.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MuPETFlow/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MuPETFlow.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# NCA - -
- -* Version: 4.0.2 -* GitHub: NA -* Source code: https://github.com/cran/NCA -* Date/Publication: 2024-11-09 18:10:02 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "NCA")` for more info - -
- -## In both - -* checking whether package ‘NCA’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NCA/new/NCA.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/new/NCA.Rcheck/NCA’ - - -``` -### CRAN - -``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/old/NCA.Rcheck/NCA’ - - -``` -# netcmc - -
- -* Version: 1.0.2 -* GitHub: NA -* Source code: https://github.com/cran/netcmc -* Date/Publication: 2022-11-08 22:30:15 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "netcmc")` for more info - -
- -## In both - -* checking whether package ‘netcmc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/new/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/netcmc’ - - -``` -### CRAN - -``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/old/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/old/netcmc.Rcheck/netcmc’ - - -``` -# NetworkChange - -
- -* Version: 0.8 -* GitHub: https://github.com/jongheepark/NetworkChange -* Source code: https://github.com/cran/NetworkChange -* Date/Publication: 2022-03-04 07:30:02 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "NetworkChange")` for more info - -
- -## In both - -* checking whether package ‘NetworkChange’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NetworkChange’ ... -** package ‘NetworkChange’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘NetworkChange’ -* removing ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/NetworkChange’ - - -``` -### CRAN - -``` -* installing *source* package ‘NetworkChange’ ... -** package ‘NetworkChange’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘NetworkChange’ -* removing ‘/tmp/workdir/NetworkChange/old/NetworkChange.Rcheck/NetworkChange’ - - -``` -# nlmeVPC - -
- -* Version: 2.6 -* GitHub: NA -* Source code: https://github.com/cran/nlmeVPC -* Date/Publication: 2022-12-22 05:20:02 UTC -* Number of recursive dependencies: 77 - -Run `revdepcheck::cloud_details(, "nlmeVPC")` for more info - -
- -## In both - -* checking whether package ‘nlmeVPC’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘nlmeVPC’ ... -** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nlmeVPC’ -* removing ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/nlmeVPC’ - - -``` -### CRAN - -``` -* installing *source* package ‘nlmeVPC’ ... -** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nlmeVPC’ -* removing ‘/tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/nlmeVPC’ - - -``` -# NMADiagT - -
- -* Version: 0.1.2 -* GitHub: NA -* Source code: https://github.com/cran/NMADiagT -* Date/Publication: 2020-02-26 07:00:02 UTC -* Number of recursive dependencies: 78 - -Run `revdepcheck::cloud_details(, "NMADiagT")` for more info - -
- -## In both - -* checking whether package ‘NMADiagT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/NMADiagT’ - - -``` -### CRAN - -``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/old/NMADiagT.Rcheck/NMADiagT’ - - -``` -# NMF - -
- -* Version: 0.28 -* GitHub: NA -* Source code: https://github.com/cran/NMF -* Date/Publication: 2024-08-22 16:20:01 UTC -* Number of recursive dependencies: 132 - -Run `revdepcheck::cloud_details(, "NMF")` for more info - -
- -## Newly broken - -* checking whether package ‘NMF’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NMF/new/NMF.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘NMF-vignette.Rnw’ using knitr - Error in citation(x) : there is no package called 'doMC' - Converted 9 of 10 package citations to BibTeX - Writing 11 Bibtex entries ... OK - Results written to file 'Rpackages.bib' - Error: processing vignette 'NMF-vignette.Rnw' failed with diagnostics: - Running 'texi2dvi' on 'NMF-vignette.tex' failed. - LaTeX errors: - ! LaTeX Error: File `a4wide.sty' not found. - ... - l.62 \usepackage - {xspace}^^M - ! ==> Fatal error occurred, no output PDF file produced! - --- failed re-building ‘heatmaps.Rnw’ - - SUMMARY: processing the following files failed: - ‘NMF-vignette.Rnw’ ‘heatmaps.Rnw’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NMF’ ... -** package ‘NMF’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c distance.cpp -o distance.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c divergence.cpp -o divergence.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c euclidean.cpp -o euclidean.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -... -Creating meta registry in package 'NMF' ... OK -Creating registry 'extra_handler' in package 'NMF' ... OK -Creating registry 'extra_action' in package 'NMF' ... OK -Registering extra handler 'install.packages' [function] ... OK -Creating registry 'algorithm' in package 'NMF' ... OK -Error in is.element("...", n.update) : unused argument (n.update) -Error: unable to load R code in package ‘NMF’ -Execution halted -ERROR: lazy loading failed for package ‘NMF’ -* removing ‘/tmp/workdir/NMF/new/NMF.Rcheck/NMF’ - - -``` -### CRAN - -``` -* installing *source* package ‘NMF’ ... -** package ‘NMF’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c distance.cpp -o distance.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c divergence.cpp -o divergence.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c euclidean.cpp -o euclidean.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -... -Registering NMF seeding method 'nndsvd' [NMFSeed] ... OK -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (NMF) - - -``` -# obliqueRSF - -
- -* Version: 0.1.2 -* GitHub: NA -* Source code: https://github.com/cran/obliqueRSF -* Date/Publication: 2022-08-28 20:50:02 UTC -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "obliqueRSF")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/obliqueRSF/new/obliqueRSF.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/obliqueRSF/old/obliqueRSF.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -# OlinkAnalyze - -
- -* Version: 4.0.2 -* GitHub: https://github.com/Olink-Proteomics/OlinkRPackage -* Source code: https://github.com/cran/OlinkAnalyze -* Date/Publication: 2024-11-22 16:20:02 UTC -* Number of recursive dependencies: 210 - -Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK -... ---- finished re-building ‘plate_randomizer.Rmd’ - -SUMMARY: processing the following file failed: - ‘Vignett.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 ERROR, 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK -... ---- finished re-building ‘plate_randomizer.Rmd’ - -SUMMARY: processing the following file failed: - ‘Vignett.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 ERROR, 2 NOTEs - - - - - -``` -# optweight - -
- -* Version: 0.2.5 -* GitHub: NA -* Source code: https://github.com/cran/optweight -* Date/Publication: 2019-09-16 15:40:02 UTC -* Number of recursive dependencies: 55 - -Run `revdepcheck::cloud_details(, "optweight")` for more info - -
- -## In both - -* checking whether package ‘optweight’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/optweight/new/optweight.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘optweight’ ... -** package ‘optweight’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘optweight’ -* removing ‘/tmp/workdir/optweight/new/optweight.Rcheck/optweight’ - - -``` -### CRAN - -``` -* installing *source* package ‘optweight’ ... -** package ‘optweight’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘optweight’ -* removing ‘/tmp/workdir/optweight/old/optweight.Rcheck/optweight’ - - -``` -# OVtool - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/OVtool -* Date/Publication: 2021-11-02 08:10:07 UTC -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "OVtool")` for more info - -
- -## In both - -* checking whether package ‘OVtool’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ - - -``` -### CRAN - -``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ - - -``` -# pammtools - -
- -* Version: 0.5.93 -* GitHub: https://github.com/adibender/pammtools -* Source code: https://github.com/cran/pammtools -* Date/Publication: 2024-02-25 10:10:02 UTC -* Number of recursive dependencies: 124 - -Run `revdepcheck::cloud_details(, "pammtools")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/pammtools/new/pammtools.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pammtools/DESCRIPTION’ ... OK -... -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking R/sysdata.rda ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/pammtools/old/pammtools.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pammtools/DESCRIPTION’ ... OK -... -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking R/sysdata.rda ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: OK - - - - - -``` -# paths - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/paths -* Date/Publication: 2021-06-18 08:40:02 UTC -* Number of recursive dependencies: 102 - -Run `revdepcheck::cloud_details(, "paths")` for more info - -
- -## In both - -* checking whether package ‘paths’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’ - - -``` -### CRAN - -``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’ - - -``` -# PathwaySpace - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PathwaySpace -* Number of recursive dependencies: 69 - -Run `revdepcheck::cloud_details(, "PathwaySpace")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# pcvr - -
- -* Version: 1.1.1.0 -* GitHub: https://github.com/danforthcenter/pcvr -* Source code: https://github.com/cran/pcvr -* Date/Publication: 2024-11-06 20:50:02 UTC -* Number of recursive dependencies: 192 - -Run `revdepcheck::cloud_details(, "pcvr")` for more info - -
- -## In both - -* checking whether package ‘pcvr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pcvr’ ... -** package ‘pcvr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pcvr’ -* removing ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/pcvr’ - - -``` -### CRAN - -``` -* installing *source* package ‘pcvr’ ... -** package ‘pcvr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pcvr’ -* removing ‘/tmp/workdir/pcvr/old/pcvr.Rcheck/pcvr’ - - -``` -# PLMIX - -
- -* Version: 2.1.1 -* GitHub: NA -* Source code: https://github.com/cran/PLMIX -* Date/Publication: 2019-09-04 11:50:02 UTC -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "PLMIX")` for more info - -
- -## In both - -* checking whether package ‘PLMIX’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘PLMIX’ ... -** package ‘PLMIX’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PLMIX’ -* removing ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/PLMIX’ - - -``` -### CRAN - -``` -* installing *source* package ‘PLMIX’ ... -** package ‘PLMIX’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PLMIX’ -* removing ‘/tmp/workdir/PLMIX/old/PLMIX.Rcheck/PLMIX’ - - -``` -# popstudy - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/popstudy -* Date/Publication: 2023-10-17 23:50:02 UTC -* Number of recursive dependencies: 242 - -Run `revdepcheck::cloud_details(, "popstudy")` for more info - -
- -## In both - -* checking whether package ‘popstudy’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/popstudy’ - - -``` -### CRAN - -``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/old/popstudy.Rcheck/popstudy’ - - -``` -# pould - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/pould -* Date/Publication: 2020-10-16 13:50:03 UTC -* Number of recursive dependencies: 104 - -Run `revdepcheck::cloud_details(, "pould")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/pould/new/pould.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pould/DESCRIPTION’ ... OK -... -* this is package ‘pould’ version ‘1.0.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/pould/old/pould.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pould/DESCRIPTION’ ... OK -... -* this is package ‘pould’ version ‘1.0.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# PoweREST - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/PoweREST -* Date/Publication: 2024-09-09 09:30:02 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "PoweREST")` for more info - -
- -## In both - -* checking whether package ‘PoweREST’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘PoweREST’ ... -** package ‘PoweREST’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PoweREST’ -* removing ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/PoweREST’ - - -``` -### CRAN - -``` -* installing *source* package ‘PoweREST’ ... -** package ‘PoweREST’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PoweREST’ -* removing ‘/tmp/workdir/PoweREST/old/PoweREST.Rcheck/PoweREST’ - - -``` -# powerly - -
- -* Version: 1.8.6 -* GitHub: https://github.com/mihaiconstantin/powerly -* Source code: https://github.com/cran/powerly -* Date/Publication: 2022-09-09 14:10:01 UTC -* Number of recursive dependencies: 169 - -Run `revdepcheck::cloud_details(, "powerly")` for more info - -
- -## In both - -* checking whether package ‘powerly’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’ - - -``` -### CRAN - -``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’ - - -``` -# pre - -
- -* Version: 1.0.7 -* GitHub: https://github.com/marjoleinF/pre -* Source code: https://github.com/cran/pre -* Date/Publication: 2024-01-12 19:30:02 UTC -* Number of recursive dependencies: 153 - -Run `revdepcheck::cloud_details(, "pre")` for more info - -
- -## In both - -* checking whether package ‘pre’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ - - -``` -### CRAN - -``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ - - -``` -# ProFAST - -
- -* Version: 1.4 -* GitHub: https://github.com/feiyoung/ProFAST -* Source code: https://github.com/cran/ProFAST -* Date/Publication: 2024-03-18 08:10:06 UTC -* Number of recursive dependencies: 248 - -Run `revdepcheck::cloud_details(, "ProFAST")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK -... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK -... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# psbcSpeedUp - -
- -* Version: 2.0.7 -* GitHub: https://github.com/ocbe-uio/psbcSpeedUp -* Source code: https://github.com/cran/psbcSpeedUp -* Date/Publication: 2024-07-01 09:00:02 UTC -* Number of recursive dependencies: 119 - -Run `revdepcheck::cloud_details(, "psbcSpeedUp")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘psbcSpeedUp/DESCRIPTION’ ... OK -... -* this is package ‘psbcSpeedUp’ version ‘2.0.7’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/psbcSpeedUp/old/psbcSpeedUp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘psbcSpeedUp/DESCRIPTION’ ... OK -... -* this is package ‘psbcSpeedUp’ version ‘2.0.7’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# pscore - -
- -* Version: 0.4.0 -* GitHub: https://github.com/JWiley/score-project -* Source code: https://github.com/cran/pscore -* Date/Publication: 2022-05-13 22:30:02 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "pscore")` for more info - -
- -## In both - -* checking whether package ‘pscore’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ - - -``` -### CRAN - -``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ - - -``` -# pubh - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/pubh -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "pubh")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# qPCRtools - -
- -* Version: 1.0.1 -* GitHub: https://github.com/lixiang117423/qPCRtools -* Source code: https://github.com/cran/qPCRtools -* Date/Publication: 2023-11-02 13:10:05 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "qPCRtools")` for more info - -
- -## In both - -* checking whether package ‘qPCRtools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/qPCRtools/new/qPCRtools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qPCRtools’ ... -** package ‘qPCRtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qPCRtools’ -* removing ‘/tmp/workdir/qPCRtools/new/qPCRtools.Rcheck/qPCRtools’ - - -``` -### CRAN - -``` -* installing *source* package ‘qPCRtools’ ... -** package ‘qPCRtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qPCRtools’ -* removing ‘/tmp/workdir/qPCRtools/old/qPCRtools.Rcheck/qPCRtools’ - - -``` -# qris - -
- -* Version: 1.1.1 -* GitHub: https://github.com/Kyuhyun07/qris -* Source code: https://github.com/cran/qris -* Date/Publication: 2024-03-05 14:40:03 UTC -* Number of recursive dependencies: 54 - -Run `revdepcheck::cloud_details(, "qris")` for more info - -
- -## In both - -* checking whether package ‘qris’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/qris/new/qris.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/new/qris.Rcheck/00LOCK-qris/00new/qris/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/new/qris.Rcheck/qris’ - - -``` -### CRAN - -``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/old/qris.Rcheck/00LOCK-qris/00new/qris/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/old/qris.Rcheck/qris’ - - -``` -# qte - -
- -* Version: 1.3.1 -* GitHub: NA -* Source code: https://github.com/cran/qte -* Date/Publication: 2022-09-01 14:30:02 UTC -* Number of recursive dependencies: 123 - -Run `revdepcheck::cloud_details(, "qte")` for more info - -
- -## In both - -* checking whether package ‘qte’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/qte/new/qte.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qte’ ... -** package ‘qte’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qte’ -* removing ‘/tmp/workdir/qte/new/qte.Rcheck/qte’ - - -``` -### CRAN - -``` -* installing *source* package ‘qte’ ... -** package ‘qte’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qte’ -* removing ‘/tmp/workdir/qte/old/qte.Rcheck/qte’ - - -``` -# quantilogram - -
- -* Version: 3.1.1 -* GitHub: NA -* Source code: https://github.com/cran/quantilogram -* Date/Publication: 2024-08-27 12:40:02 UTC -* Number of recursive dependencies: 58 - -Run `revdepcheck::cloud_details(, "quantilogram")` for more info - -
- -## In both - -* checking whether package ‘quantilogram’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quantilogram’ ... -** package ‘quantilogram’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quantilogram’ -* removing ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/quantilogram’ - - -``` -### CRAN - -``` -* installing *source* package ‘quantilogram’ ... -** package ‘quantilogram’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quantilogram’ -* removing ‘/tmp/workdir/quantilogram/old/quantilogram.Rcheck/quantilogram’ - - -``` -# quid - -
- -* Version: 0.0.1 -* GitHub: NA -* Source code: https://github.com/cran/quid -* Date/Publication: 2021-12-09 09:00:02 UTC -* Number of recursive dependencies: 94 - -Run `revdepcheck::cloud_details(, "quid")` for more info - -
- -## In both - -* checking whether package ‘quid’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ - - -``` -### CRAN - -``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ - - -``` -# RcmdrPlugin.RiskDemo - -
- -* Version: 3.2 -* GitHub: NA -* Source code: https://github.com/cran/RcmdrPlugin.RiskDemo -* Date/Publication: 2024-02-06 09:20:02 UTC -* Number of recursive dependencies: 201 - -Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info - -
- -## In both - -* checking whether package ‘RcmdrPlugin.RiskDemo’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... -** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ -* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ - - -``` -### CRAN - -``` -* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... -** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ -* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/old/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ - - -``` -# rddtools - -
- -* Version: 1.6.0 -* GitHub: https://github.com/bquast/rddtools -* Source code: https://github.com/cran/rddtools -* Date/Publication: 2022-01-10 12:42:49 UTC -* Number of recursive dependencies: 108 - -Run `revdepcheck::cloud_details(, "rddtools")` for more info - -
- -## In both - -* checking whether package ‘rddtools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’ - - -``` -### CRAN - -``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’ - - -``` -# relsurv - -
- -* Version: 2.3-1 -* GitHub: NA -* Source code: https://github.com/cran/relsurv -* Date/Publication: 2025-01-20 15:40:01 UTC -* Number of recursive dependencies: 112 - -Run `revdepcheck::cloud_details(, "relsurv")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/relsurv/new/relsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘relsurv/DESCRIPTION’ ... OK -... -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking line endings in Makefiles ... OK -* checking compilation flags in Makevars ... OK -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/relsurv/old/relsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘relsurv/DESCRIPTION’ ... OK -... -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking line endings in Makefiles ... OK -* checking compilation flags in Makevars ... OK -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -# ReporterScore - -
- -* Version: 0.1.9 -* GitHub: https://github.com/Asa12138/ReporterScore -* Source code: https://github.com/cran/ReporterScore -* Date/Publication: 2024-11-28 14:10:06 UTC -* Number of recursive dependencies: 250 - -Run `revdepcheck::cloud_details(, "ReporterScore")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ReporterScore/new/ReporterScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ReporterScore/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘ReporterScore.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/ReporterScore/old/ReporterScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ReporterScore/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘ReporterScore.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# RGraphSpace - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RGraphSpace -* Number of recursive dependencies: 64 - -Run `revdepcheck::cloud_details(, "RGraphSpace")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# riskRegression - -
- -* Version: 2023.12.21 -* GitHub: https://github.com/tagteam/riskRegression -* Source code: https://github.com/cran/riskRegression -* Date/Publication: 2023-12-19 17:00:02 UTC -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "riskRegression")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘riskRegression/DESCRIPTION’ ... OK -... -* this is package ‘riskRegression’ version ‘2023.12.21’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/riskRegression/old/riskRegression.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘riskRegression/DESCRIPTION’ ... OK -... -* this is package ‘riskRegression’ version ‘2023.12.21’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# rmlnomogram - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/rmlnomogram -* Number of recursive dependencies: 181 - -Run `revdepcheck::cloud_details(, "rmlnomogram")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rms - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/rms -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "rms")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# robber - -
- -* Version: 0.2.4 -* GitHub: https://github.com/Chabert-Liddell/robber -* Source code: https://github.com/cran/robber -* Date/Publication: 2024-02-07 13:50:02 UTC -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "robber")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/robber/new/robber.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘robber/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘topological-analysis.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/robber/old/robber.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘robber/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘topological-analysis.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# robmed - -
- -* Version: 1.2.0 -* GitHub: https://github.com/aalfons/robmed -* Source code: https://github.com/cran/robmed -* Date/Publication: 2024-12-10 00:00:02 UTC -* Number of recursive dependencies: 59 - -Run `revdepcheck::cloud_details(, "robmed")` for more info - -
- -## In both - -* checking whether package ‘robmed’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ - - -``` -### CRAN - -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ - - -``` -# robmedExtra - -
- -* Version: 0.1.1 -* GitHub: https://github.com/aalfons/robmedExtra -* Source code: https://github.com/cran/robmedExtra -* Date/Publication: 2024-11-03 12:10:01 UTC -* Number of recursive dependencies: 91 - -Run `revdepcheck::cloud_details(, "robmedExtra")` for more info - -
- -## In both - -* checking whether package ‘robmedExtra’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘robmedExtra’ ... -** package ‘robmedExtra’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘robmedExtra’ -* removing ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/robmedExtra’ - - -``` -### CRAN - -``` -* installing *source* package ‘robmedExtra’ ... -** package ‘robmedExtra’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘robmedExtra’ -* removing ‘/tmp/workdir/robmedExtra/old/robmedExtra.Rcheck/robmedExtra’ - - -``` -# RPPanalyzer - -
- -* Version: 1.4.9 -* GitHub: NA -* Source code: https://github.com/cran/RPPanalyzer -* Date/Publication: 2024-01-25 11:00:02 UTC -* Number of recursive dependencies: 82 - -Run `revdepcheck::cloud_details(, "RPPanalyzer")` for more info - -
- -## In both - -* checking whether package ‘RPPanalyzer’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RPPanalyzer’ ... -** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RPPanalyzer’ -* removing ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/RPPanalyzer’ - - -``` -### CRAN - -``` -* installing *source* package ‘RPPanalyzer’ ... -** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RPPanalyzer’ -* removing ‘/tmp/workdir/RPPanalyzer/old/RPPanalyzer.Rcheck/RPPanalyzer’ - - -``` -# RQdeltaCT - -
- -* Version: 1.3.0 -* GitHub: NA -* Source code: https://github.com/cran/RQdeltaCT -* Date/Publication: 2024-04-17 15:50:02 UTC -* Number of recursive dependencies: 163 - -Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info - -
- -## In both - -* checking whether package ‘RQdeltaCT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’ - - -``` -### CRAN - -``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’ - - -``` -# RRPP - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RRPP -* Number of recursive dependencies: 67 - -Run `revdepcheck::cloud_details(, "RRPP")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rstanarm - -
- -* Version: 2.32.1 -* GitHub: https://github.com/stan-dev/rstanarm -* Source code: https://github.com/cran/rstanarm -* Date/Publication: 2024-01-18 23:00:03 UTC -* Number of recursive dependencies: 140 - -Run `revdepcheck::cloud_details(, "rstanarm")` for more info - -
- -## In both - -* checking whether package ‘rstanarm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 -rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ - - -``` -### CRAN - -``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 -rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ - - -``` -# rTwig - -
- -* Version: 1.3.0 -* GitHub: https://github.com/aidanmorales/rTwig -* Source code: https://github.com/cran/rTwig -* Date/Publication: 2024-11-21 21:30:02 UTC -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "rTwig")` for more info - -
- -## In both - -* checking whether package ‘rTwig’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rTwig’ ... -** package ‘rTwig’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c box_counting.cpp -o box_counting.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cluster_cloud.cpp -o cluster_cloud.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c colors.cpp -o colors.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rTwig’ -* removing ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/rTwig’ - - -``` -### CRAN - -``` -* installing *source* package ‘rTwig’ ... -** package ‘rTwig’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c box_counting.cpp -o box_counting.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cluster_cloud.cpp -o cluster_cloud.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c colors.cpp -o colors.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rTwig’ -* removing ‘/tmp/workdir/rTwig/old/rTwig.Rcheck/rTwig’ - - -``` -# RVA - -
- -* Version: 0.0.5 -* GitHub: https://github.com/THERMOSTATS/RVA -* Source code: https://github.com/cran/RVA -* Date/Publication: 2021-11-01 21:40:02 UTC -* Number of recursive dependencies: 210 - -Run `revdepcheck::cloud_details(, "RVA")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -... -* this is package ‘RVA’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -... -* this is package ‘RVA’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# S4DM - -
- -* Version: 0.0.1 -* GitHub: NA -* Source code: https://github.com/cran/S4DM -* Date/Publication: 2025-01-10 21:00:02 UTC -* Number of recursive dependencies: 138 - -Run `revdepcheck::cloud_details(, "S4DM")` for more info - -
- -## In both - -* checking whether package ‘S4DM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/S4DM/new/S4DM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘S4DM’ ... -** package ‘S4DM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘S4DM’ -* removing ‘/tmp/workdir/S4DM/new/S4DM.Rcheck/S4DM’ - - -``` -### CRAN - -``` -* installing *source* package ‘S4DM’ ... -** package ‘S4DM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘S4DM’ -* removing ‘/tmp/workdir/S4DM/old/S4DM.Rcheck/S4DM’ - - -``` -# scCustomize - -
- -* Version: 3.0.1 -* GitHub: https://github.com/samuel-marsh/scCustomize -* Source code: https://github.com/cran/scCustomize -* Date/Publication: 2024-12-18 18:40:02 UTC -* Number of recursive dependencies: 272 - -Run `revdepcheck::cloud_details(, "scCustomize")` for more info - -
- -## In both - -* checking whether package ‘scCustomize’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘Nebulosa’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scCustomize’ ... -** package ‘scCustomize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘scCustomize’ -* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’ - - -``` -### CRAN - -``` -* installing *source* package ‘scCustomize’ ... -** package ‘scCustomize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘scCustomize’ -* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’ - - -``` -# SCdeconR - -
- -* Version: 1.0.0 -* GitHub: https://github.com/Liuy12/SCdeconR -* Source code: https://github.com/cran/SCdeconR -* Date/Publication: 2024-03-22 19:20:02 UTC -* Number of recursive dependencies: 237 - -Run `revdepcheck::cloud_details(, "SCdeconR")` for more info - -
- -## In both - -* checking whether package ‘SCdeconR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCdeconR’ ... -** package ‘SCdeconR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘SCdeconR’ -* removing ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/SCdeconR’ - - -``` -### CRAN - -``` -* installing *source* package ‘SCdeconR’ ... -** package ‘SCdeconR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘SCdeconR’ -* removing ‘/tmp/workdir/SCdeconR/old/SCdeconR.Rcheck/SCdeconR’ - - -``` -# scGate - -
- -* Version: 1.6.2 -* GitHub: https://github.com/carmonalab/scGate -* Source code: https://github.com/cran/scGate -* Date/Publication: 2024-04-23 08:50:02 UTC -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "scGate")` for more info - -
- -## In both - -* checking whether package ‘scGate’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scGate/new/scGate.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scGate’ ... -** package ‘scGate’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scGate’ -* removing ‘/tmp/workdir/scGate/new/scGate.Rcheck/scGate’ - - -``` -### CRAN - -``` -* installing *source* package ‘scGate’ ... -** package ‘scGate’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scGate’ -* removing ‘/tmp/workdir/scGate/old/scGate.Rcheck/scGate’ - - -``` -# SCIntRuler - -
- -* Version: 0.99.6 -* GitHub: https://github.com/yuelyu21/SCIntRuler -* Source code: https://github.com/cran/SCIntRuler -* Date/Publication: 2024-07-12 15:20:08 UTC -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "SCIntRuler")` for more info - -
- -## In both - -* checking whether package ‘SCIntRuler’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCIntRuler’ ... -** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCIntRuler’ -* removing ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/SCIntRuler’ - - -``` -### CRAN - -``` -* installing *source* package ‘SCIntRuler’ ... -** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCIntRuler’ -* removing ‘/tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/SCIntRuler’ - - -``` -# scMappR - -
- -* Version: 1.0.11 -* GitHub: NA -* Source code: https://github.com/cran/scMappR -* Date/Publication: 2023-06-30 08:40:08 UTC -* Number of recursive dependencies: 241 - -Run `revdepcheck::cloud_details(, "scMappR")` for more info - -
- -## In both - -* checking whether package ‘scMappR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scMappR’ ... -** package ‘scMappR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scMappR’ -* removing ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/scMappR’ - - -``` -### CRAN - -``` -* installing *source* package ‘scMappR’ ... -** package ‘scMappR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scMappR’ -* removing ‘/tmp/workdir/scMappR/old/scMappR.Rcheck/scMappR’ - - -``` -# scpi - -
- -* Version: 2.2.6 -* GitHub: NA -* Source code: https://github.com/cran/scpi -* Date/Publication: 2024-11-11 23:40:02 UTC -* Number of recursive dependencies: 96 - -Run `revdepcheck::cloud_details(, "scpi")` for more info - -
- -## In both - -* checking whether package ‘scpi’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scpi’ ... -** package ‘scpi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : -... -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scpi’ -* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’ - - -``` -### CRAN - -``` -* installing *source* package ‘scpi’ ... -** package ‘scpi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : -... -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scpi’ -* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’ - - -``` -# SCpubr - -
- -* Version: 2.0.2 -* GitHub: https://github.com/enblacar/SCpubr -* Source code: https://github.com/cran/SCpubr -* Date/Publication: 2023-10-11 09:50:02 UTC -* Number of recursive dependencies: 301 - -Run `revdepcheck::cloud_details(, "SCpubr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# scRNAstat - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/scRNAstat -* Date/Publication: 2021-09-22 08:10:02 UTC -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "scRNAstat")` for more info - -
- -## In both - -* checking whether package ‘scRNAstat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scRNAstat’ ... -** package ‘scRNAstat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘SeuratObject’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -... -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘DBI’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scRNAstat’ -* removing ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/scRNAstat’ - - -``` -### CRAN - -``` -* installing *source* package ‘scRNAstat’ ... -** package ‘scRNAstat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘SeuratObject’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -... -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘DBI’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scRNAstat’ -* removing ‘/tmp/workdir/scRNAstat/old/scRNAstat.Rcheck/scRNAstat’ - - -``` -# sectorgap - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/sectorgap -* Date/Publication: 2024-01-22 17:40:02 UTC -* Number of recursive dependencies: 46 - -Run `revdepcheck::cloud_details(, "sectorgap")` for more info - -
- -## In both - -* checking whether package ‘sectorgap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sectorgap/new/sectorgap.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sectorgap’ ... -** package ‘sectorgap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sectorgap’ -* removing ‘/tmp/workdir/sectorgap/new/sectorgap.Rcheck/sectorgap’ - - -``` -### CRAN - -``` -* installing *source* package ‘sectorgap’ ... -** package ‘sectorgap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sectorgap’ -* removing ‘/tmp/workdir/sectorgap/old/sectorgap.Rcheck/sectorgap’ - - -``` -# SEERaBomb - -
- -* Version: 2019.2 -* GitHub: NA -* Source code: https://github.com/cran/SEERaBomb -* Date/Publication: 2019-12-12 18:50:03 UTC -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info - -
- -## In both - -* checking whether package ‘SEERaBomb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SEERaBomb’ ... -** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘SEERaBomb’ -* removing ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/SEERaBomb’ - - -``` -### CRAN - -``` -* installing *source* package ‘SEERaBomb’ ... -** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘SEERaBomb’ -* removing ‘/tmp/workdir/SEERaBomb/old/SEERaBomb.Rcheck/SEERaBomb’ - - -``` -# semicmprskcoxmsm - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/semicmprskcoxmsm -* Date/Publication: 2022-04-29 23:40:02 UTC -* Number of recursive dependencies: 70 - -Run `revdepcheck::cloud_details(, "semicmprskcoxmsm")` for more info - -
- -## In both - -* checking whether package ‘semicmprskcoxmsm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘semicmprskcoxmsm’ ... -** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ -* removing ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ - - -``` -### CRAN - -``` -* installing *source* package ‘semicmprskcoxmsm’ ... -** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ -* removing ‘/tmp/workdir/semicmprskcoxmsm/old/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ - - -``` -# SensMap - -
- -* Version: 0.7 -* GitHub: https://github.com/IbtihelRebhi/SensMap -* Source code: https://github.com/cran/SensMap -* Date/Publication: 2022-07-04 19:00:02 UTC -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "SensMap")` for more info - -
- -## In both - -* checking whether package ‘SensMap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/SensMap’ - - -``` -### CRAN - -``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/old/SensMap.Rcheck/SensMap’ - - -``` -# Seurat - -
- -* Version: 5.2.1 -* GitHub: https://github.com/satijalab/seurat -* Source code: https://github.com/cran/Seurat -* Date/Publication: 2025-01-24 06:50:06 UTC -* Number of recursive dependencies: 281 - -Run `revdepcheck::cloud_details(, "Seurat")` for more info - -
- -## In both - -* checking whether package ‘Seurat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Seurat’ ... -** package ‘Seurat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘Seurat’ -* removing ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/Seurat’ - - -``` -### CRAN - -``` -* installing *source* package ‘Seurat’ ... -** package ‘Seurat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘Seurat’ -* removing ‘/tmp/workdir/Seurat/old/Seurat.Rcheck/Seurat’ - - -``` -# shinyTempSignal - -
- -* Version: 0.0.8 -* GitHub: https://github.com/YuLab-SMU/shinyTempSignal -* Source code: https://github.com/cran/shinyTempSignal -* Date/Publication: 2024-03-06 08:00:02 UTC -* Number of recursive dependencies: 134 - -Run `revdepcheck::cloud_details(, "shinyTempSignal")` for more info - -
- -## In both - -* checking whether package ‘shinyTempSignal’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘shinyTempSignal’ ... -** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shinyTempSignal’ -* removing ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/shinyTempSignal’ - - -``` -### CRAN - -``` -* installing *source* package ‘shinyTempSignal’ ... -** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shinyTempSignal’ -* removing ‘/tmp/workdir/shinyTempSignal/old/shinyTempSignal.Rcheck/shinyTempSignal’ - - -``` -# sievePH - -
- -* Version: 1.1 -* GitHub: https://github.com/mjuraska/sievePH -* Source code: https://github.com/cran/sievePH -* Date/Publication: 2024-05-17 23:40:02 UTC -* Number of recursive dependencies: 76 - -Run `revdepcheck::cloud_details(, "sievePH")` for more info - -
- -## In both - -* checking whether package ‘sievePH’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sievePH’ ... -** package ‘sievePH’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c kernel_sievePH_utils.cpp -o kernel_sievePH_utils.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sievePH.so RcppExports.o kernel_sievePH_utils.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sievePH/new/sievePH.Rcheck/00LOCK-sievePH/00new/sievePH/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sievePH’ -* removing ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/sievePH’ - - -``` -### CRAN - -``` -* installing *source* package ‘sievePH’ ... -** package ‘sievePH’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c kernel_sievePH_utils.cpp -o kernel_sievePH_utils.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sievePH.so RcppExports.o kernel_sievePH_utils.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sievePH/old/sievePH.Rcheck/00LOCK-sievePH/00new/sievePH/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sievePH’ -* removing ‘/tmp/workdir/sievePH/old/sievePH.Rcheck/sievePH’ - - -``` -# SiFINeT - -
- -* Version: 1.13 -* GitHub: NA -* Source code: https://github.com/cran/SiFINeT -* Date/Publication: 2025-01-16 15:10:05 UTC -* Number of recursive dependencies: 75 - -Run `revdepcheck::cloud_details(, "SiFINeT")` for more info - -
- -## In both - -* checking whether package ‘SiFINeT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SiFINeT/new/SiFINeT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SiFINeT’ ... -** package ‘SiFINeT’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c EstNull.cpp -o EstNull.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp.cpp -o cal_coexp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp_sp.cpp -o cal_coexp_sp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_conn.cpp -o cal_conn.o -... -installing to /tmp/workdir/SiFINeT/new/SiFINeT.Rcheck/00LOCK-SiFINeT/00new/SiFINeT/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SiFINeT’ -* removing ‘/tmp/workdir/SiFINeT/new/SiFINeT.Rcheck/SiFINeT’ - - -``` -### CRAN - -``` -* installing *source* package ‘SiFINeT’ ... -** package ‘SiFINeT’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c EstNull.cpp -o EstNull.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp.cpp -o cal_coexp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp_sp.cpp -o cal_coexp_sp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_conn.cpp -o cal_conn.o -... -installing to /tmp/workdir/SiFINeT/old/SiFINeT.Rcheck/00LOCK-SiFINeT/00new/SiFINeT/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SiFINeT’ -* removing ‘/tmp/workdir/SiFINeT/old/SiFINeT.Rcheck/SiFINeT’ - - -``` -# sigminer - -
- -* Version: 2.3.1 -* GitHub: https://github.com/ShixiangWang/sigminer -* Source code: https://github.com/cran/sigminer -* Date/Publication: 2024-05-11 08:50:02 UTC -* Number of recursive dependencies: 212 - -Run `revdepcheck::cloud_details(, "sigminer")` for more info - -
- -## Newly broken - -* checking whether package ‘sigminer’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sigminer/new/sigminer.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking installed package size ... NOTE - ``` - installed size is 7.9Mb - sub-directories of 1Mb or more: - R 1.0Mb - data 2.0Mb - extdata 1.0Mb - help 1.7Mb - libs 1.3Mb - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sigminer’ ... -** package ‘sigminer’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c calc_cosine.cpp -o calc_cosine.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c get_intersect_size.cpp -o get_intersect_size.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sigminer.so RcppExports.o calc_cosine.o get_intersect_size.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sigminer/new/sigminer.Rcheck/00LOCK-sigminer/00new/sigminer/libs -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'NMF', details: - call: is.element(models, models.wraps) - error: unused argument (models.wraps) -Execution halted -ERROR: lazy loading failed for package ‘sigminer’ -* removing ‘/tmp/workdir/sigminer/new/sigminer.Rcheck/sigminer’ - - -``` -### CRAN - -``` -* installing *source* package ‘sigminer’ ... -** package ‘sigminer’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c calc_cosine.cpp -o calc_cosine.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c get_intersect_size.cpp -o get_intersect_size.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sigminer.so RcppExports.o calc_cosine.o get_intersect_size.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sigminer/old/sigminer.Rcheck/00LOCK-sigminer/00new/sigminer/libs -... -** help -*** installing help indices -*** copying figures -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (sigminer) - - -``` -# Signac - -
- -* Version: 1.14.0 -* GitHub: https://github.com/stuart-lab/signac -* Source code: https://github.com/cran/Signac -* Date/Publication: 2024-08-21 07:40:02 UTC -* Number of recursive dependencies: 246 - -Run `revdepcheck::cloud_details(, "Signac")` for more info - -
- -## In both - -* checking whether package ‘Signac’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Signac/new/Signac.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Signac’ ... -** package ‘Signac’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Signac’ -* removing ‘/tmp/workdir/Signac/new/Signac.Rcheck/Signac’ - - -``` -### CRAN - -``` -* installing *source* package ‘Signac’ ... -** package ‘Signac’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Signac’ -* removing ‘/tmp/workdir/Signac/old/Signac.Rcheck/Signac’ - - -``` -# SimplyAgree - -
- -* Version: 0.2.0 -* GitHub: https://github.com/arcaldwell49/SimplyAgree -* Source code: https://github.com/cran/SimplyAgree -* Date/Publication: 2024-03-21 14:20:06 UTC -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info - -
- -## In both - -* checking whether package ‘SimplyAgree’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SimplyAgree’ ... -** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SimplyAgree’ -* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’ - - -``` -### CRAN - -``` -* installing *source* package ‘SimplyAgree’ ... -** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SimplyAgree’ -* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’ - - -``` -# smer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/smer -* Number of recursive dependencies: 114 - -Run `revdepcheck::cloud_details(, "smer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SNPassoc - -
- -* Version: 2.1-2 -* GitHub: https://github.com/isglobal-brge/SNPassoc -* Source code: https://github.com/cran/SNPassoc -* Date/Publication: 2024-10-28 17:30:02 UTC -* Number of recursive dependencies: 164 - -Run `revdepcheck::cloud_details(, "SNPassoc")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SNPassoc/DESCRIPTION’ ... OK -... -* this is package ‘SNPassoc’ version ‘2.1-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SNPassoc/DESCRIPTION’ ... OK -... -* this is package ‘SNPassoc’ version ‘2.1-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# snplinkage - -
- -* Version: 1.2.0 -* GitHub: NA -* Source code: https://github.com/cran/snplinkage -* Date/Publication: 2024-09-09 19:10:02 UTC -* Number of recursive dependencies: 155 - -Run `revdepcheck::cloud_details(, "snplinkage")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/snplinkage/new/snplinkage.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘snplinkage/DESCRIPTION’ ... OK -... -* this is package ‘snplinkage’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘GWASTools’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/snplinkage/old/snplinkage.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘snplinkage/DESCRIPTION’ ... OK -... -* this is package ‘snplinkage’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘GWASTools’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SoupX - -
- -* Version: 1.6.2 -* GitHub: https://github.com/constantAmateur/SoupX -* Source code: https://github.com/cran/SoupX -* Date/Publication: 2022-11-01 14:00:03 UTC -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "SoupX")` for more info - -
- -## In both - -* checking whether package ‘SoupX’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SoupX’ ... -** package ‘SoupX’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SoupX’ -* removing ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/SoupX’ - - -``` -### CRAN - -``` -* installing *source* package ‘SoupX’ ... -** package ‘SoupX’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SoupX’ -* removing ‘/tmp/workdir/SoupX/old/SoupX.Rcheck/SoupX’ - - -``` -# SpaCCI - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/SpaCCI -* Date/Publication: 2025-01-18 23:10:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "SpaCCI")` for more info - -
- -## In both - -* checking whether package ‘SpaCCI’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SpaCCI/new/SpaCCI.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SpaCCI’ ... -** package ‘SpaCCI’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c permutation_func.cpp -o permutation_func.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SpaCCI.so RcppExports.o permutation_func.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SpaCCI/new/SpaCCI.Rcheck/00LOCK-SpaCCI/00new/SpaCCI/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SpaCCI’ -* removing ‘/tmp/workdir/SpaCCI/new/SpaCCI.Rcheck/SpaCCI’ - - -``` -### CRAN - -``` -* installing *source* package ‘SpaCCI’ ... -** package ‘SpaCCI’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c permutation_func.cpp -o permutation_func.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SpaCCI.so RcppExports.o permutation_func.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SpaCCI/old/SpaCCI.Rcheck/00LOCK-SpaCCI/00new/SpaCCI/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SpaCCI’ -* removing ‘/tmp/workdir/SpaCCI/old/SpaCCI.Rcheck/SpaCCI’ - - -``` -# sparsereg - -
- -* Version: 1.2 -* GitHub: NA -* Source code: https://github.com/cran/sparsereg -* Date/Publication: 2016-03-10 23:32:18 -* Number of recursive dependencies: 50 - -Run `revdepcheck::cloud_details(, "sparsereg")` for more info - -
- -## In both - -* checking whether package ‘sparsereg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sparsereg’ ... -** package ‘sparsereg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sparsereg/new/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sparsereg’ -* removing ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/sparsereg’ - - -``` -### CRAN - -``` -* installing *source* package ‘sparsereg’ ... -** package ‘sparsereg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sparsereg/old/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sparsereg’ -* removing ‘/tmp/workdir/sparsereg/old/sparsereg.Rcheck/sparsereg’ - - -``` -# spectralAnalysis - -
- -* Version: 4.3.3 -* GitHub: NA -* Source code: https://github.com/cran/spectralAnalysis -* Date/Publication: 2024-01-30 08:50:02 UTC -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "spectralAnalysis")` for more info - -
- -## Newly broken - -* checking whether package ‘spectralAnalysis’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/spectralAnalysis/new/spectralAnalysis.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking installed package size ... NOTE - ``` - installed size is 6.0Mb - sub-directories of 1Mb or more: - doc 4.6Mb - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘spectralAnalysis’ ... -** package ‘spectralAnalysis’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'NMF', details: - call: is.element(models, models.wraps) - error: unused argument (models.wraps) -Execution halted -ERROR: lazy loading failed for package ‘spectralAnalysis’ -* removing ‘/tmp/workdir/spectralAnalysis/new/spectralAnalysis.Rcheck/spectralAnalysis’ - - -``` -### CRAN - -``` -* installing *source* package ‘spectralAnalysis’ ... -** package ‘spectralAnalysis’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Creating a new generic function for ‘smooth’ in package ‘spectralAnalysis’ -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (spectralAnalysis) - - -``` -# spikeSlabGAM - -
- -* Version: 1.1-20 -* GitHub: https://github.com/fabian-s/spikeSlabGAM -* Source code: https://github.com/cran/spikeSlabGAM -* Date/Publication: 2024-10-22 17:30:02 UTC -* Number of recursive dependencies: 77 - -Run `revdepcheck::cloud_details(, "spikeSlabGAM")` for more info - -
- -## In both - -* checking whether package ‘spikeSlabGAM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘spikeSlabGAM’ ... -** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sampler.c -o sampler.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00LOCK-spikeSlabGAM/00new/spikeSlabGAM/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘spikeSlabGAM’ -* removing ‘/tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/spikeSlabGAM’ - - -``` -### CRAN - -``` -* installing *source* package ‘spikeSlabGAM’ ... -** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sampler.c -o sampler.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/spikeSlabGAM/old/spikeSlabGAM.Rcheck/00LOCK-spikeSlabGAM/00new/spikeSlabGAM/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘spikeSlabGAM’ -* removing ‘/tmp/workdir/spikeSlabGAM/old/spikeSlabGAM.Rcheck/spikeSlabGAM’ - - -``` -# stabiliser - -
- -* Version: 1.0.6 -* GitHub: NA -* Source code: https://github.com/cran/stabiliser -* Date/Publication: 2023-05-17 11:00:05 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "stabiliser")` for more info - -
- -## In both - -* checking whether package ‘stabiliser’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘stabiliser’ ... -** package ‘stabiliser’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘maditr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘stabiliser’ -* removing ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/stabiliser’ - - -``` -### CRAN - -``` -* installing *source* package ‘stabiliser’ ... -** package ‘stabiliser’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘maditr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘stabiliser’ -* removing ‘/tmp/workdir/stabiliser/old/stabiliser.Rcheck/stabiliser’ - - -``` -# statsr - -
- -* Version: 0.3.0 -* GitHub: https://github.com/StatsWithR/statsr -* Source code: https://github.com/cran/statsr -* Date/Publication: 2021-01-22 20:40:03 UTC -* Number of recursive dependencies: 96 - -Run `revdepcheck::cloud_details(, "statsr")` for more info - -
- -## In both - -* checking whether package ‘statsr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/statsr/new/statsr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘statsr’ ... -** package ‘statsr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘statsr’ -* removing ‘/tmp/workdir/statsr/new/statsr.Rcheck/statsr’ - - -``` -### CRAN - -``` -* installing *source* package ‘statsr’ ... -** package ‘statsr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘statsr’ -* removing ‘/tmp/workdir/statsr/old/statsr.Rcheck/statsr’ - - -``` -# streamDAG - -
- -* Version: 1.5-9 -* GitHub: NA -* Source code: https://github.com/cran/streamDAG -* Date/Publication: 2025-01-14 21:50:02 UTC -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "streamDAG")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5-9’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘asbio’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5-9’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘asbio’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# survex - -
- -* Version: 1.2.0 -* GitHub: https://github.com/ModelOriented/survex -* Source code: https://github.com/cran/survex -* Date/Publication: 2023-10-24 18:50:07 UTC -* Number of recursive dependencies: 182 - -Run `revdepcheck::cloud_details(, "survex")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/survex/new/survex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survex/DESCRIPTION’ ... OK -... -  A new explainer has been created!  -> -> y <- cph_exp$y -> times <- cph_exp$times -> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) -Error in loadNamespace(x) : there is no package called ‘riskRegression’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/survex/old/survex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survex/DESCRIPTION’ ... OK -... -  A new explainer has been created!  -> -> y <- cph_exp$y -> times <- cph_exp$times -> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) -Error in loadNamespace(x) : there is no package called ‘riskRegression’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# survHE - -
- -* Version: 2.0.2 -* GitHub: https://github.com/giabaio/survHE -* Source code: https://github.com/cran/survHE -* Date/Publication: 2024-10-04 09:50:02 UTC -* Number of recursive dependencies: 129 - -Run `revdepcheck::cloud_details(, "survHE")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/survHE/new/survHE.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survHE/DESCRIPTION’ ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -Packages suggested but not available for checking: - 'survHEinla', 'survHEhmc' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/survHE/old/survHE.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survHE/DESCRIPTION’ ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -Packages suggested but not available for checking: - 'survHEinla', 'survHEhmc' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# survidm - -
- -* Version: 1.3.2 -* GitHub: NA -* Source code: https://github.com/cran/survidm -* Date/Publication: 2021-06-24 23:20:02 UTC -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "survidm")` for more info - -
- -## In both - -* checking whether package ‘survidm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/survidm/new/survidm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘survidm’ ... -** package ‘survidm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survidm_init.c -o survidm_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survivalBIV.c -o survivalBIV.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o survidm.so survidm_init.o survivalBIV.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/survidm/new/survidm.Rcheck/00LOCK-survidm/00new/survidm/libs -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘survidm’ -* removing ‘/tmp/workdir/survidm/new/survidm.Rcheck/survidm’ - - -``` -### CRAN - -``` -* installing *source* package ‘survidm’ ... -** package ‘survidm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survidm_init.c -o survidm_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survivalBIV.c -o survivalBIV.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o survidm.so survidm_init.o survivalBIV.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/survidm/old/survidm.Rcheck/00LOCK-survidm/00new/survidm/libs -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘survidm’ -* removing ‘/tmp/workdir/survidm/old/survidm.Rcheck/survidm’ - - -``` -# tempted - -
- -* Version: 0.1.1 -* GitHub: https://github.com/pixushi/tempted -* Source code: https://github.com/cran/tempted -* Date/Publication: 2024-05-09 02:40:02 UTC -* Number of recursive dependencies: 37 - -Run `revdepcheck::cloud_details(, "tempted")` for more info - -
- -## In both - -* checking whether package ‘tempted’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tempted/new/tempted.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tempted’ ... -** package ‘tempted’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘tempted’ -* removing ‘/tmp/workdir/tempted/new/tempted.Rcheck/tempted’ - - -``` -### CRAN - -``` -* installing *source* package ‘tempted’ ... -** package ‘tempted’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘tempted’ -* removing ‘/tmp/workdir/tempted/old/tempted.Rcheck/tempted’ - - -``` -# TestAnaAPP - -
- -* Version: 1.1.2 -* GitHub: https://github.com/jiangyouxiang/TestAnaAPP -* Source code: https://github.com/cran/TestAnaAPP -* Date/Publication: 2024-11-09 04:00:02 UTC -* Number of recursive dependencies: 255 - -Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK -... -* this is package ‘TestAnaAPP’ version ‘1.1.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘lordif’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK -... -* this is package ‘TestAnaAPP’ version ‘1.1.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘lordif’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# tidydr - -
- -* Version: 0.0.5 -* GitHub: https://github.com/YuLab-SMU/tidydr -* Source code: https://github.com/cran/tidydr -* Date/Publication: 2023-03-08 09:20:02 UTC -* Number of recursive dependencies: 79 - -Run `revdepcheck::cloud_details(, "tidydr")` for more info - -
- -## Newly broken - -* checking whether package ‘tidydr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidydr’ ... -** package ‘tidydr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'len0_null' not found -Error: unable to load R code in package ‘tidydr’ -Execution halted -ERROR: lazy loading failed for package ‘tidydr’ -* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidydr’ ... -** package ‘tidydr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (tidydr) - - -``` -# tidyEdSurvey - -
- -* Version: 0.1.3 -* GitHub: NA -* Source code: https://github.com/cran/tidyEdSurvey -* Date/Publication: 2024-05-14 20:20:03 UTC -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info - -
- -## In both +## Newly fixed -* checking whether package ‘tidyEdSurvey’ can be installed ... ERROR +* checking dependencies in R code ... NOTE ``` - Installation failed. - See ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/00install.out’ for details. + ':::' call which should be '::': ‘scales:::censor’ + See the note in ?`:::` about the use of this operator. + Unexported object imported by a ':::' call: ‘productplots:::bound’ + See the note in ?`:::` about the use of this operator. ``` ## Installation @@ -12336,65 +429,80 @@ Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info ### Devel ``` -* installing *source* package ‘tidyEdSurvey’ ... -** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -In addition: Warning message: -In check_dep_version() : ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘ggmosaic’ Execution halted -ERROR: lazy loading failed for package ‘tidyEdSurvey’ -* removing ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/tidyEdSurvey’ +ERROR: lazy loading failed for package ‘ggmosaic’ +* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’ ``` ### CRAN ``` -* installing *source* package ‘tidyEdSurvey’ ... -** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -In addition: Warning message: -In check_dep_version() : ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Execution halted -ERROR: lazy loading failed for package ‘tidyEdSurvey’ -* removing ‘/tmp/workdir/tidyEdSurvey/old/tidyEdSurvey.Rcheck/tidyEdSurvey’ +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggmosaic) ``` -# tidyseurat +# ggtern
-* Version: 0.8.0 -* GitHub: https://github.com/stemangiola/tidyseurat -* Source code: https://github.com/cran/tidyseurat -* Date/Publication: 2024-01-10 04:50:02 UTC -* Number of recursive dependencies: 196 +* Version: 3.5.0 +* GitHub: NA +* Source code: https://github.com/cran/ggtern +* Date/Publication: 2024-03-24 21:50:02 UTC +* Number of recursive dependencies: 40 -Run `revdepcheck::cloud_details(, "tidyseurat")` for more info +Run `revdepcheck::cloud_details(, "ggtern")` for more info
-## In both +## Newly broken -* checking whether package ‘tidyseurat’ can be installed ... ERROR +* checking whether package ‘ggtern’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘chemometrics’ + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘sp’ ``` ## Installation @@ -12402,61 +510,64 @@ Run `revdepcheck::cloud_details(, "tidyseurat")` for more info ### Devel ``` -* installing *source* package ‘tidyseurat’ ... -** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB +** demo ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.zero' not found +Error: unable to load R code in package ‘ggtern’ Execution halted -ERROR: lazy loading failed for package ‘tidyseurat’ -* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’ +ERROR: lazy loading failed for package ‘ggtern’ +* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ ``` ### CRAN ``` -* installing *source* package ‘tidyseurat’ ... -** package ‘tidyseurat’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB +** demo ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘tidyseurat’ -* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’ +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggtern) ``` -# tidyvpc +# inventorize
-* Version: 1.5.2 -* GitHub: https://github.com/certara/tidyvpc -* Source code: https://github.com/cran/tidyvpc -* Date/Publication: 2024-11-21 23:10:02 UTC -* Number of recursive dependencies: 180 +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/inventorize +* Date/Publication: 2022-05-31 22:20:09 UTC +* Number of recursive dependencies: 69 -Run `revdepcheck::cloud_details(, "tidyvpc")` for more info +Run `revdepcheck::cloud_details(, "inventorize")` for more info
-## In both +## Newly broken -* checking whether package ‘tidyvpc’ can be installed ... ERROR +* checking whether package ‘inventorize’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. ``` ## Installation @@ -12464,54 +575,49 @@ Run `revdepcheck::cloud_details(, "tidyvpc")` for more info ### Devel ``` -* installing *source* package ‘tidyvpc’ ... -** package ‘tidyvpc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in pm[[2]] : subscript out of bounds +Error: unable to load R code in package ‘inventorize’ Execution halted -ERROR: lazy loading failed for package ‘tidyvpc’ -* removing ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/tidyvpc’ +ERROR: lazy loading failed for package ‘inventorize’ +* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ ``` ### CRAN ``` -* installing *source* package ‘tidyvpc’ ... -** package ‘tidyvpc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘tidyvpc’ -* removing ‘/tmp/workdir/tidyvpc/old/tidyvpc.Rcheck/tidyvpc’ +Warning in qgamma(service_level, alpha, beta) : NaNs produced +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (inventorize) ``` -# tinyarray +# metabolic
-* Version: 2.4.2 -* GitHub: https://github.com/xjsun1221/tinyarray -* Source code: https://github.com/cran/tinyarray -* Date/Publication: 2024-06-13 14:20:02 UTC -* Number of recursive dependencies: 250 +* Version: 0.1.2 +* GitHub: https://github.com/fmmattioni/metabolic +* Source code: https://github.com/cran/metabolic +* Date/Publication: 2023-10-10 07:40:02 UTC +* Number of recursive dependencies: 136 -Run `revdepcheck::cloud_details(, "tinyarray")` for more info +Run `revdepcheck::cloud_details(, "metabolic")` for more info
@@ -12520,27 +626,27 @@ Run `revdepcheck::cloud_details(, "tinyarray")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/tinyarray/new/tinyarray.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) +* using log directory ‘/tmp/workdir/metabolic/new/metabolic.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘tinyarray/DESCRIPTION’ ... OK +* checking for file ‘metabolic/DESCRIPTION’ ... OK ... -* this is package ‘tinyarray’ version ‘2.4.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. +* checking data for non-ASCII characters ... NOTE + Note: found 37 marked UTF-8 strings +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘spelling.R’ * DONE -Status: 1 ERROR +Status: 2 NOTEs @@ -12550,53 +656,131 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/tinyarray/old/tinyarray.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) +* using log directory ‘/tmp/workdir/metabolic/old/metabolic.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘tinyarray/DESCRIPTION’ ... OK +* checking for file ‘metabolic/DESCRIPTION’ ... OK ... -* this is package ‘tinyarray’ version ‘2.4.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. +* checking data for non-ASCII characters ... NOTE + Note: found 37 marked UTF-8 strings +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘spelling.R’ * DONE -Status: 1 ERROR +Status: 2 NOTEs + + + + + +``` +# multinma + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/dmphillippo/multinma +* Source code: https://github.com/cran/multinma +* Date/Publication: 2025-03-25 22:50:16 UTC +* Number of recursive dependencies: 149 + +Run `revdepcheck::cloud_details(, "multinma")` for more info + +
+ +## In both + +* checking whether package ‘multinma’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ + + +``` +### CRAN +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ ``` -# treeclim +# OpenMx
-* Version: 2.0.7.1 -* GitHub: https://github.com/cszang/treeclim -* Source code: https://github.com/cran/treeclim -* Date/Publication: 2024-12-16 16:20:02 UTC -* Number of recursive dependencies: 60 +* Version: 2.22.6 +* GitHub: https://github.com/OpenMx/OpenMx +* Source code: https://github.com/cran/OpenMx +* Date/Publication: 2025-05-19 19:10:02 UTC +* Number of recursive dependencies: 160 -Run `revdepcheck::cloud_details(, "treeclim")` for more info +Run `revdepcheck::cloud_details(, "OpenMx")` for more info
## In both -* checking whether package ‘treeclim’ can be installed ... ERROR +* checking whether package ‘OpenMx’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/treeclim/new/treeclim.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/OpenMx/new/OpenMx.Rcheck/00install.out’ for details. ``` ## Installation @@ -12604,77 +788,140 @@ Run `revdepcheck::cloud_details(, "treeclim")` for more info ### Devel ``` -* installing *source* package ‘treeclim’ ... -** package ‘treeclim’ successfully unpacked and MD5 sums checked +* installing *source* package ‘OpenMx’ ... +** package ‘OpenMx’ successfully unpacked and MD5 sums checked ** using staged installation +NOTE: ./configure is not an autoconf generated script. +Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars ** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun.cpp -o corfun.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_exact.cpp -o corfun_exact.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_noboot.cpp -o corfun_noboot.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c pcor.cpp -o pcor.o +using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 ... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘treeclim’ -* removing ‘/tmp/workdir/treeclim/new/treeclim.Rcheck/treeclim’ + | ^~~~ +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:51:58: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:52:64: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 52 | QuarterPacketSize = unpacket_traits::size, + | ^~~~ +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:52:64: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:52:64: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:204: omxData.o] Error 1 +ERROR: compilation failed for package ‘OpenMx’ +* removing ‘/tmp/workdir/OpenMx/new/OpenMx.Rcheck/OpenMx’ ``` ### CRAN ``` -* installing *source* package ‘treeclim’ ... -** package ‘treeclim’ successfully unpacked and MD5 sums checked +* installing *source* package ‘OpenMx’ ... +** package ‘OpenMx’ successfully unpacked and MD5 sums checked ** using staged installation +NOTE: ./configure is not an autoconf generated script. +Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars ** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun.cpp -o corfun.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_exact.cpp -o corfun_exact.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_noboot.cpp -o corfun_noboot.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c pcor.cpp -o pcor.o +using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 ... -** data -*** moving datasets to lazyload DB + | ^~~~ +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:51:58: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:52:64: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 52 | QuarterPacketSize = unpacket_traits::size, + | ^~~~ +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:52:64: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:52:64: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:204: omxData.o] Error 1 +ERROR: compilation failed for package ‘OpenMx’ +* removing ‘/tmp/workdir/OpenMx/old/OpenMx.Rcheck/OpenMx’ + + +``` +# PieGlyph + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/rishvish/PieGlyph +* Source code: https://github.com/cran/PieGlyph +* Date/Publication: 2024-06-28 12:00:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "PieGlyph")` for more info + +
+ +## Newly broken + +* checking whether package ‘PieGlyph’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked +** using staged installation +** R ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘PieGlyph’ Execution halted -ERROR: lazy loading failed for package ‘treeclim’ -* removing ‘/tmp/workdir/treeclim/old/treeclim.Rcheck/treeclim’ +ERROR: lazy loading failed for package ‘PieGlyph’ +* removing ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/PieGlyph’ ``` -# TriDimRegression +### CRAN + +``` +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (PieGlyph) + + +``` +# rmsb
-* Version: 1.0.2 -* GitHub: https://github.com/alexander-pastukhov/tridim-regression -* Source code: https://github.com/cran/TriDimRegression -* Date/Publication: 2023-09-13 14:10:03 UTC -* Number of recursive dependencies: 98 +* Version: 1.1-2 +* GitHub: NA +* Source code: https://github.com/cran/rmsb +* Date/Publication: 2025-04-13 16:30:02 UTC +* Number of recursive dependencies: 137 -Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info +Run `revdepcheck::cloud_details(, "rmsb")` for more info
## In both -* checking whether package ‘TriDimRegression’ can be installed ... ERROR +* checking whether package ‘rmsb’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. ``` ## Installation @@ -12682,51 +929,51 @@ Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info ### Devel ``` -* installing *source* package ‘TriDimRegression’ ... -** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked ** using staged installation Error in loadNamespace(x) : there is no package called ‘rstantools’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: configuration failed for package ‘TriDimRegression’ -* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ ``` ### CRAN ``` -* installing *source* package ‘TriDimRegression’ ... -** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked ** using staged installation Error in loadNamespace(x) : there is no package called ‘rstantools’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: configuration failed for package ‘TriDimRegression’ -* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ ``` -# TSrepr +# rshift
-* Version: 1.1.0 -* GitHub: https://github.com/PetoLau/TSrepr -* Source code: https://github.com/cran/TSrepr -* Date/Publication: 2020-07-13 06:50:15 UTC -* Number of recursive dependencies: 71 +* Version: 3.1.2 +* GitHub: https://github.com/alexhroom/rshift +* Source code: https://github.com/cran/rshift +* Date/Publication: 2025-04-06 18:40:02 UTC +* Number of recursive dependencies: 35 -Run `revdepcheck::cloud_details(, "TSrepr")` for more info +Run `revdepcheck::cloud_details(, "rshift")` for more info
## In both -* checking whether package ‘TSrepr’ can be installed ... ERROR +* checking whether package ‘rshift’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rshift/new/rshift.Rcheck/00install.out’ for details. ``` ## Installation @@ -12734,77 +981,77 @@ Run `revdepcheck::cloud_details(, "TSrepr")` for more info ### Devel ``` -* installing *source* package ‘TSrepr’ ... -** package ‘TSrepr’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rshift’ ... +** package ‘rshift’ successfully unpacked and MD5 sums checked ** using staged installation +Using cargo 1.75.0 +Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball) +Building for CRAN. +Writing `src/Makevars`. +`tools/config.R` has finished. ** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o +using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ ... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘TSrepr’ -* removing ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/TSrepr’ +export CARGO_HOME=/tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \ +export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \ +RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target +error: failed to parse lock file at: /tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock + +Caused by: + lock file version 4 requires `-Znext-lockfile-bump` +make: *** [Makevars:28: rust/target/release/librshift.a] Error 101 +ERROR: compilation failed for package ‘rshift’ +* removing ‘/tmp/workdir/rshift/new/rshift.Rcheck/rshift’ ``` ### CRAN ``` -* installing *source* package ‘TSrepr’ ... -** package ‘TSrepr’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rshift’ ... +** package ‘rshift’ successfully unpacked and MD5 sums checked ** using staged installation +Using cargo 1.75.0 +Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball) +Building for CRAN. +Writing `src/Makevars`. +`tools/config.R` has finished. ** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o +using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ ... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘TSrepr’ -* removing ‘/tmp/workdir/TSrepr/old/TSrepr.Rcheck/TSrepr’ +export CARGO_HOME=/tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \ +export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \ +RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target +error: failed to parse lock file at: /tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock + +Caused by: + lock file version 4 requires `-Znext-lockfile-bump` +make: *** [Makevars:28: rust/target/release/librshift.a] Error 101 +ERROR: compilation failed for package ‘rshift’ +* removing ‘/tmp/workdir/rshift/old/rshift.Rcheck/rshift’ ``` -# twang +# RSP
-* Version: 2.6.1 +* Version: 0.4 * GitHub: NA -* Source code: https://github.com/cran/twang -* Date/Publication: 2024-07-22 16:10:01 UTC -* Number of recursive dependencies: 53 +* Source code: https://github.com/cran/RSP +* Date/Publication: 2023-09-24 21:00:02 UTC +* Number of recursive dependencies: 206 -Run `revdepcheck::cloud_details(, "twang")` for more info +Run `revdepcheck::cloud_details(, "RSP")` for more info
## In both -* checking whether package ‘twang’ can be installed ... ERROR +* checking whether package ‘RSP’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/twang/new/twang.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/RSP/new/RSP.Rcheck/00install.out’ for details. ``` ## Installation @@ -12812,73 +1059,59 @@ Run `revdepcheck::cloud_details(, "twang")` for more info ### Devel ``` -* installing *source* package ‘twang’ ... -** package ‘twang’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RSP’ ... +** package ‘RSP’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ks.c -o ks.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o twang.so init.o ks.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/twang/new/twang.Rcheck/00LOCK-twang/00new/twang/libs ** R -** data ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘OpenMx’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘twang’ -* removing ‘/tmp/workdir/twang/new/twang.Rcheck/twang’ +ERROR: lazy loading failed for package ‘RSP’ +* removing ‘/tmp/workdir/RSP/new/RSP.Rcheck/RSP’ ``` ### CRAN ``` -* installing *source* package ‘twang’ ... -** package ‘twang’ successfully unpacked and MD5 sums checked +* installing *source* package ‘RSP’ ... +** package ‘RSP’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ks.c -o ks.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o twang.so init.o ks.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/twang/old/twang.Rcheck/00LOCK-twang/00new/twang/libs ** R -** data ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘OpenMx’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘twang’ -* removing ‘/tmp/workdir/twang/old/twang.Rcheck/twang’ +ERROR: lazy loading failed for package ‘RSP’ +* removing ‘/tmp/workdir/RSP/old/RSP.Rcheck/RSP’ ``` -# vdg +# rstanarm
-* Version: 1.2.3 -* GitHub: NA -* Source code: https://github.com/cran/vdg -* Date/Publication: 2024-04-23 13:00:02 UTC -* Number of recursive dependencies: 45 +* Version: 2.32.1 +* GitHub: https://github.com/stan-dev/rstanarm +* Source code: https://github.com/cran/rstanarm +* Date/Publication: 2024-01-18 23:00:03 UTC +* Number of recursive dependencies: 140 -Run `revdepcheck::cloud_details(, "vdg")` for more info +Run `revdepcheck::cloud_details(, "rstanarm")` for more info
## In both -* checking whether package ‘vdg’ can be installed ... ERROR +* checking whether package ‘rstanarm’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/vdg/new/vdg.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. ``` ## Installation @@ -12886,61 +1119,67 @@ Run `revdepcheck::cloud_details(, "vdg")` for more info ### Devel ``` -* installing *source* package ‘vdg’ ... -** package ‘vdg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gfortran -fpic -g -O2 -c FDS.f -o FDS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/vdg/new/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘vdg’ -* removing ‘/tmp/workdir/vdg/new/vdg.Rcheck/vdg’ +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ ``` ### CRAN ``` -* installing *source* package ‘vdg’ ... -** package ‘vdg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gfortran -fpic -g -O2 -c FDS.f -o FDS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/vdg/old/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘vdg’ -* removing ‘/tmp/workdir/vdg/old/vdg.Rcheck/vdg’ +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ ``` -# VecDep +# StatTeacherAssistant
* Version: NA * GitHub: NA -* Source code: https://github.com/cran/VecDep -* Number of recursive dependencies: 100 +* Source code: https://github.com/cran/StatTeacherAssistant +* Number of recursive dependencies: 124 -Run `revdepcheck::cloud_details(, "VecDep")` for more info +Run `revdepcheck::cloud_details(, "StatTeacherAssistant")` for more info
@@ -12966,80 +1205,17 @@ Run `revdepcheck::cloud_details(, "VecDep")` for more info ``` -# visa - -
- -* Version: 0.1.0 -* GitHub: https://github.com/kang-yu/visa -* Source code: https://github.com/cran/visa -* Date/Publication: 2021-04-20 07:20:02 UTC -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "visa")` for more info - -
- -## In both - -* checking whether package ‘visa’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/visa/new/visa.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘visa’ ... -** package ‘visa’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘visa’ -* removing ‘/tmp/workdir/visa/new/visa.Rcheck/visa’ - - -``` -### CRAN - -``` -* installing *source* package ‘visa’ ... -** package ‘visa’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘visa’ -* removing ‘/tmp/workdir/visa/old/visa.Rcheck/visa’ - - -``` -# VisualizeSimon2Stage +# streamDAG
-* Version: NA +* Version: 1.5-9 * GitHub: NA -* Source code: https://github.com/cran/VisualizeSimon2Stage -* Number of recursive dependencies: 36 +* Source code: https://github.com/cran/streamDAG +* Date/Publication: 2025-01-14 21:50:02 UTC +* Number of recursive dependencies: 137 -Run `revdepcheck::cloud_details(, "VisualizeSimon2Stage")` for more info +Run `revdepcheck::cloud_details(, "streamDAG")` for more info
@@ -13048,7 +1224,25 @@ Run `revdepcheck::cloud_details(, "VisualizeSimon2Stage")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5-9’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR @@ -13058,33 +1252,51 @@ Run `revdepcheck::cloud_details(, "VisualizeSimon2Stage")` for more info ### CRAN ``` +* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5-9’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR ``` -# wppExplorer +# TestAnaAPP
-* Version: 2.3-4 -* GitHub: NA -* Source code: https://github.com/cran/wppExplorer -* Date/Publication: 2020-04-09 09:10:02 UTC -* Number of recursive dependencies: 99 +* Version: 1.1.2 +* GitHub: https://github.com/jiangyouxiang/TestAnaAPP +* Source code: https://github.com/cran/TestAnaAPP +* Date/Publication: 2024-11-09 04:00:02 UTC +* Number of recursive dependencies: 253 -Run `revdepcheck::cloud_details(, "wppExplorer")` for more info +Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info
-## Newly broken +## In both -* checking whether package ‘wppExplorer’ can be installed ... ERROR +* checking whether package ‘TestAnaAPP’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/wppExplorer/new/wppExplorer.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/00install.out’ for details. ``` ## Installation @@ -13092,62 +1304,59 @@ Run `revdepcheck::cloud_details(, "wppExplorer")` for more info ### Devel ``` -* installing *source* package ‘wppExplorer’ ... -** package ‘wppExplorer’ successfully unpacked and MD5 sums checked +* installing *source* package ‘TestAnaAPP’ ... +** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data ** inst ** byte-compile and prepare package for lazy loading -Error in is.element(wpp.data.env$iso3166$uncode, wpp.data.env$popM$country_code) : - unused argument (wpp.data.env$popM$country_code) -Error: unable to load R code in package ‘wppExplorer’ +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘OpenMx’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘wppExplorer’ -* removing ‘/tmp/workdir/wppExplorer/new/wppExplorer.Rcheck/wppExplorer’ +ERROR: lazy loading failed for package ‘TestAnaAPP’ +* removing ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/TestAnaAPP’ ``` ### CRAN ``` -* installing *source* package ‘wppExplorer’ ... -** package ‘wppExplorer’ successfully unpacked and MD5 sums checked +* installing *source* package ‘TestAnaAPP’ ... +** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data ** inst ** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (wppExplorer) +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘OpenMx’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘TestAnaAPP’ +* removing ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck/TestAnaAPP’ ``` -# WRTDStidal +# tidydr
-* Version: 1.1.4 -* GitHub: https://github.com/fawda123/WRTDStidal -* Source code: https://github.com/cran/WRTDStidal -* Date/Publication: 2023-10-20 09:00:11 UTC -* Number of recursive dependencies: 139 +* Version: 0.0.5 +* GitHub: https://github.com/YuLab-SMU/tidydr +* Source code: https://github.com/cran/tidydr +* Date/Publication: 2023-03-08 09:20:02 UTC +* Number of recursive dependencies: 76 -Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info +Run `revdepcheck::cloud_details(, "tidydr")` for more info
-## In both +## Newly broken -* checking whether package ‘WRTDStidal’ can be installed ... ERROR +* checking whether package ‘tidydr’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. ``` ## Installation @@ -13155,75 +1364,90 @@ Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info ### Devel ``` -* installing *source* package ‘WRTDStidal’ ... -** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in get(x, envir = ns, inherits = FALSE) : + object 'len0_null' not found +Error: unable to load R code in package ‘tidydr’ Execution halted -ERROR: lazy loading failed for package ‘WRTDStidal’ -* removing ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/WRTDStidal’ +ERROR: lazy loading failed for package ‘tidydr’ +* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ ``` ### CRAN ``` -* installing *source* package ‘WRTDStidal’ ... -** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘WRTDStidal’ -* removing ‘/tmp/workdir/WRTDStidal/old/WRTDStidal.Rcheck/WRTDStidal’ +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tidydr) ``` -# xxdi +# TriDimRegression
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/xxdi -* Number of recursive dependencies: 37 +* Version: 1.0.2 +* GitHub: https://github.com/alexander-pastukhov/tridim-regression +* Source code: https://github.com/cran/TriDimRegression +* Date/Publication: 2023-09-13 14:10:03 UTC +* Number of recursive dependencies: 96 -Run `revdepcheck::cloud_details(, "xxdi")` for more info +Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info
-## Error before installation - -### Devel - -``` +## In both +* checking whether package ‘TriDimRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ ``` ### CRAN ``` - - - - +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ ``` diff --git a/revdep/problems.md b/revdep/problems.md index e69de29bb2..2b510259b0 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -0,0 +1,17881 @@ +# actxps + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/mattheaphy/actxps +* Source code: https://github.com/cran/actxps +* Date/Publication: 2025-01-07 13:00:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "actxps")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘actxps.Rmd’ using rmarkdown + Warning: thematic was unable to resolve `bg='auto'`. Try providing an actual color (or `NA`) to the `bg` argument of `thematic_on()`. By the way, 'auto' is only officially supported in `shiny::renderPlot()`, some rmarkdown scenarios (specifically, `html_document()` with `theme!=NULL`), in RStudio, or if `auto_config_set()` is used. + Warning: thematic was unable to resolve `fg='auto'`. Try providing an actual color (or `NA`) to the `fg` argument of `thematic_on()`. By the way, 'auto' is only officially supported in `shiny::renderPlot()`, some rmarkdown scenarios (specifically, `html_document()` with `theme!=NULL`), in RStudio, or if `auto_config_set()` is used. + Warning: thematic was unable to resolve `accent='auto'`. Try providing an actual color (or `NA`) to the `accent` argument of `thematic_on()`. By the way, 'auto' is only officially supported in `shiny::renderPlot()`, some rmarkdown scenarios (specifically, `html_document()` with `theme!=NULL`), in RStudio, or if `auto_config_set()` is used. + + Quitting from actxps.Rmd:128-130 [plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `adjust_color()`: + ... + + Error: processing vignette 'transactions.Rmd' failed with diagnostics: + Internal error: adjust_color() expects an input of length 1 + --- failed re-building ‘transactions.Rmd’ + + SUMMARY: processing the following files failed: + ‘actxps.Rmd’ ‘misc.Rmd’ ‘transactions.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# adklakedata + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/lawinslow/adklakedata +* Source code: https://github.com/cran/adklakedata +* Date/Publication: 2018-02-16 19:08:16 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "adklakedata")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘adklakedata-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adk_lake_shapes + > ### Title: Return path to Lake Polygons Shapefile + > ### Aliases: adk_lake_shapes + > + > ### ** Examples + > + > library(sf) + Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE + > bl = read_sf(adklakedata::adk_shape()) + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: read_sf ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# adw + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/PanfengZhang/adw +* Source code: https://github.com/cran/adw +* Date/Publication: 2024-04-15 19:10:16 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "adw")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘adw-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adw + > ### Title: Angular Distance Weighting Interpolation. + > ### Aliases: adw + > + > ### ** Examples + > + > set.seed(2) + ... + 4 111.75 31.25 -0.47570806 + 5 112.25 31.25 -1.57521787 + 6 112.75 31.25 -1.10541492 + > + > # example 2 + > hmap <- cnmap::getMap(code = "410000") |> sf::st_make_valid() # return a 'sf' object. + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Introduction.Rmd’ using rmarkdown + + Quitting from Introduction.Rmd:47-74 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `process_cpl_read_ogr()`: + ! package tibble not available: install first? + --- + Backtrace: + ... + + Error: processing vignette 'Introduction.Rmd' failed with diagnostics: + package tibble not available: install first? + --- failed re-building ‘Introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘Introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# AeRobiology + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/AeRobiology +* Date/Publication: 2019-06-03 06:20:03 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "AeRobiology")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘my-vignette.Rmd’ using rmarkdown + ``` + +# afex + +
+ +* Version: 1.4-1 +* GitHub: https://github.com/singmann/afex +* Source code: https://github.com/cran/afex +* Date/Publication: 2024-09-01 16:10:02 UTC +* Number of recursive dependencies: 238 + +Run `revdepcheck::cloud_details(, "afex")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown + ``` + +# AgroR + +
+ +* Version: 1.3.6 +* GitHub: NA +* Source code: https://github.com/cran/AgroR +* Date/Publication: 2024-04-24 02:20:18 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "AgroR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AgroR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: logistic + > ### Title: Analysis: Logistic regression + > ### Aliases: logistic + > + > ### ** Examples + > + > data("emerg") + ... + 27. └─vctrs (local) ``() + 28. └─vctrs::vec_default_ptype2(...) + 29. ├─base::withRestarts(...) + 30. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 31. │ └─base (local) doWithOneRestart(return(expr), restart) + 32. └─vctrs::stop_incompatible_type(...) + 33. └─vctrs:::stop_incompatible(...) + 34. └─vctrs:::stop_vctrs(...) + 35. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# alookr + +
+ +* Version: 0.3.9 +* GitHub: https://github.com/choonghyunryu/alookr +* Source code: https://github.com/cran/alookr +* Date/Publication: 2024-02-11 07:30:02 UTC +* Number of recursive dependencies: 169 + +Run `revdepcheck::cloud_details(, "alookr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘alookr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare_plot + > ### Title: Comparison plot of train set and test set + > ### Aliases: compare_plot + > + > ### ** Examples + > + > library(dplyr) + ... + > sb %>% + + compare_plot() + Warning: `unite_()` was deprecated in tidyr 1.2.0. + ℹ Please use `unite()` instead. + ℹ The deprecated feature was likely used in the ggmosaic package. + Please report the issue at . + Error in make_title(..., self = self) : + unused arguments ("dataset class", "x") + Calls: %>% ... labels -> -> resolve_label -> + Execution halted + ``` + +# AmpliconDuo + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/AmpliconDuo +* Date/Publication: 2020-05-25 22:20:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "AmpliconDuo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AmpliconDuo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AmpliconDuo-package + > ### Title: Statistical Analysis Of Amplicon Data Of The Same Sample To + > ### Identify Spurious Amplicons + > ### Aliases: AmpliconDuo-package AmpliconDuo + > ### Keywords: package + > + > ### ** Examples + ... + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. ├─rlang::exec(scale, !!!args) + 5. └─ggplot2 (local) ``(...) + 6. ├─ggplot2::discrete_scale(...) + 7. │ └─ggplot2::ggproto(...) + 8. │ └─rlang::list2(...) + 9. └─ggplot2:::pal_qualitative(type = type) + 10. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 11. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) AmpliconDuo-package.Rd:37-39: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:40-42: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:43-46: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:47-49: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:50-52: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:53-55: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:56-58: Lost braces in \itemize; meant \describe ? + ``` + +# AnalysisLin + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/AnalysisLin +* Date/Publication: 2024-01-30 00:10:10 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "AnalysisLin")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AnalysisLin-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bar_plot + > ### Title: Bar Plots for Categorical Variables + > ### Aliases: bar_plot + > + > ### ** Examples + > + > data(iris) + > bar_plot(iris) + Error in pm[[2]] : subscript out of bounds + Calls: bar_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# animbook + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/KrisanatA/animbook +* Source code: https://github.com/cran/animbook +* Date/Publication: 2023-12-05 17:50:07 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "animbook")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘animbook-Ex.R’ failed + The error most likely occurred in: + + > ### Name: anim_animate + > ### Title: Modified the ggplot object + > ### Aliases: anim_animate + > + > ### ** Examples + > + > animbook <- anim_prep(data = osiris, id = ID, values = sales, time = year, group = japan) + ... + transform it into an animated object + > + > animate <- anim_animate(plot) + You can now pass it to gganimate::animate(). + The recommended setting is nframes = 89 + > + > plotly::ggplotly(animate) + Error in pm[[2]] : subscript out of bounds + Calls: -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# ANN2 + +
+ +* Version: 2.3.4 +* GitHub: https://github.com/bflammers/ANN2 +* Source code: https://github.com/cran/ANN2 +* Date/Publication: 2020-12-01 10:00:02 UTC +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "ANN2")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ANN2) + > + > # Only test if not on mac + > if (tolower(Sys.info()[["sysname"]]) != "darwin") { + + test_check("ANN2") + + } + ... + ── Failure ('test-plotting.R:59:3'): the reconstruction_plot.ANN() function works correctly ── + p_AE$labels$colour not equal to "col". + target is NULL, current is character + ── Failure ('test-plotting.R:77:3'): the compression_plot.ANN() function works correctly ── + p_AE$labels$colour not equal to "col". + target is NULL, current is character + + [ FAIL 5 | WARN 2 | SKIP 4 | PASS 143 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking installed package size ... NOTE + ``` + installed size is 48.9Mb + sub-directories of 1Mb or more: + cereal 1.4Mb + libs 47.4Mb + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# APackOfTheClones + +
+ +* Version: 1.2.4 +* GitHub: https://github.com/Qile0317/APackOfTheClones +* Source code: https://github.com/cran/APackOfTheClones +* Date/Publication: 2024-11-18 22:30:02 UTC +* Number of recursive dependencies: 175 + +Run `revdepcheck::cloud_details(, "APackOfTheClones")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘APackOfTheClones-Ex.R’ failed + The error most likely occurred in: + + > ### Name: APOTCPlot + > ### Title: Various variations of visualizations of clonal expansion + > ### post-RunAPOTC + > ### Aliases: APOTCPlot + > + > ### ** Examples + > + ... + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + > + > combined_pbmc <- RunAPOTC( + + combined_pbmc, run_id = "run1", verbose = FALSE + + ) + > + > # plotting with default arguments will plot the latest "run1" + > clonal_packing_plot <- APOTCPlot(combined_pbmc) + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + 17. │ └─vctrs:::stop_names(...) + 18. │ └─vctrs:::stop_vctrs(...) + 19. │ └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + 20. ├─APackOfTheClones:::name_latest_legend_layer(.) + 21. │ └─plt %>% name_latest_layer(.ApotcLegendLayerName) + 22. └─APackOfTheClones:::name_latest_layer(., .ApotcLegendLayerName) + + [ FAIL 5 | WARN 57 | SKIP 10 | PASS 239 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘APackOfTheClones-install.Rmd’ using rmarkdown + --- finished re-building ‘APackOfTheClones-install.Rmd’ + + --- re-building ‘APackOfTheClones-runs.Rmd’ using rmarkdown + ``` + +## In both + +* checking contents of ‘data’ directory ... WARNING + ``` + Output for data("combined_pbmc", package = "APackOfTheClones"): + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 7.6Mb + sub-directories of 1Mb or more: + help 1.1Mb + libs 5.3Mb + ``` + +# APCtools + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/bauer-alex/APCtools +* Source code: https://github.com/cran/APCtools +* Date/Publication: 2023-01-13 23:30:02 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "APCtools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘APCtools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_densityMatrix + > ### Title: Create a matrix of density plots + > ### Aliases: plot_densityMatrix + > + > ### ** Examples + > + > library(APCtools) + ... + 2.2.0 and is now defunct. + ℹ Please use the `rows` argument instead. + Backtrace: + ▆ + 1. └─APCtools::plot_densityMatrix(...) + 2. └─ggplot2::facet_grid(facets = facet_formula, switch = "y") + 3. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 4. └─lifecycle:::deprecate_stop0(msg) + 5. └─rlang::cnd_signal(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(APCtools) + > + > test_check("APCtools") + Loading required package: nlme + This is mgcv 1.9-1. For overview type 'help("mgcv-package")'. + Excluding 9565 missing observations of mainTrip_distance... + ... + ▆ + 1. └─APCtools::plot_densityMatrix(...) at test-plots_descriptive.R:148:3 + 2. └─ggplot2::facet_grid(facets = facet_formula, switch = "y") + 3. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 4. └─lifecycle:::deprecate_stop0(msg) + 5. └─rlang::cnd_signal(...) + + [ FAIL 3 | WARN 39 | SKIP 0 | PASS 69 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘main_functionality.Rmd’ using rmarkdown + ``` + +# applicable + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/tidymodels/applicable +* Source code: https://github.com/cran/applicable +* Date/Publication: 2024-04-25 00:00:04 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "applicable")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(applicable) + Loading required package: ggplot2 + > + > test_check("applicable") + Loading required package: dplyr + ... + `expected` is a character vector ('percentile') + ── Failure ('test-plot.R:36:3'): output of autoplot.apd_pca is correct when options=distance are provided ── + ad_plot$labels$y (`actual`) not equal to "percentile" (`expected`). + + `actual` is NULL + `expected` is a character vector ('percentile') + + [ FAIL 3 | WARN 0 | SKIP 22 | PASS 90 ] + Error: Test failures + Execution halted + ``` + +# arulesViz + +
+ +* Version: 1.5.3 +* GitHub: https://github.com/mhahsler/arulesViz +* Source code: https://github.com/cran/arulesViz +* Date/Publication: 2024-04-26 09:20:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "arulesViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘arulesViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_arulesViz + > ### Title: Visualize Association Rules and Itemsets + > ### Aliases: plot_arulesViz plot.rules plot plot.itemsets + > ### plot.grouped_matrix plotly guide_edge_colourbar + > ### Keywords: hplot + > + > ### ** Examples + ... + 23. └─vctrs::vec_default_cast(...) + 24. ├─base::withRestarts(...) + 25. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 26. │ └─base (local) doWithOneRestart(return(expr), restart) + 27. └─vctrs::stop_incompatible_cast(...) + 28. └─vctrs::stop_incompatible_type(...) + 29. └─vctrs:::stop_incompatible(...) + 30. └─vctrs:::stop_vctrs(...) + 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘arulesViz.Rnw’ using Sweave + Loading required package: arules + Loading required package: Matrix + + Attaching package: ‘arules’ + + The following objects are masked from ‘package:base’: + + ... + To reduce overplotting, jitter is added! Use jitter = 0 to prevent jitter. + Error: processing vignette 'arulesViz.Rnw' failed with diagnostics: + Can't convert to . + --- failed re-building ‘arulesViz.Rnw’ + + SUMMARY: processing the following file failed: + ‘arulesViz.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# autocogs + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/schloerke/autocogs +* Source code: https://github.com/cran/autocogs +* Date/Publication: 2021-05-29 17:00:05 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "autocogs")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(autocogs) + > + > test_check("autocogs") + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 8. └─autocogs (local) FUN(X[[i]], ...) + 9. └─base::lapply(...) + 10. └─autocogs (local) FUN(X[[i]], ...) + 11. ├─base::do.call(fn, args) + 12. └─autocogs (local) ``(...) + 13. └─base::do.call(loess, c(core_params, params$method.args)) + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’ + All declared Imports should be used. + ``` + +# autoplotly + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/terrytangyuan/autoplotly +* Source code: https://github.com/cran/autoplotly +* Date/Publication: 2021-04-18 06:50:11 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "autoplotly")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘autoplotly-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplotly + > ### Title: Automatic Visualization of Popular Statistical Results Using + > ### 'plotly.js' and 'ggplot2' + > ### Aliases: autoplotly + > + > ### ** Examples + > + ... + > p <- autoplotly(prcomp(iris[c(1, 2, 3, 4)]), data = iris, + + colour = 'Species', label = TRUE, label.size = 3, frame = TRUE) + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the ggfortify package. + Please report the issue at . + Error in pm[[2]] : subscript out of bounds + Calls: autoplotly ... autoplotly.default -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(autoplotly) + > + > test_check("autoplotly") + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ▆ + 1. ├─autoplotly::autoplotly(...) at test_all.R:26:3 + 2. └─autoplotly:::autoplotly.default(...) + 3. ├─plotly::ggplotly(...) + 4. └─plotly:::ggplotly.ggplot(...) + 5. └─plotly::gg2list(...) + + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +# bakeoff + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/apreshill/bakeoff +* Source code: https://github.com/cran/bakeoff +* Date/Publication: 2022-10-21 15:25:10 UTC +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "bakeoff")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bakeoff-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bakeoff_palette + > ### Title: A *bakeoff* palette generator + > ### Aliases: bakeoff_palette + > + > ### ** Examples + > + > bakeoff_palette("showstopper") + ... + 18. └─vctrs (local) ``() + 19. └─vctrs::vec_default_ptype2(...) + 20. ├─base::withRestarts(...) + 21. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 22. │ └─base (local) doWithOneRestart(return(expr), restart) + 23. └─vctrs::stop_incompatible_type(...) + 24. └─vctrs:::stop_incompatible(...) + 25. └─vctrs:::stop_vctrs(...) + 26. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 260 marked UTF-8 strings + ``` + +# bartMan + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/bartMan +* Date/Publication: 2024-07-24 12:10:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "bartMan")` for more info + +
+ +## Newly broken + +* checking whether package ‘bartMan’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in eval(exprs[i], envir) : object 'justify_grobs' not found +Error: unable to load R code in package ‘bartMan’ +Execution halted +ERROR: lazy loading failed for package ‘bartMan’ +* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’ + + +``` +### CRAN + +``` +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bartMan) + + +``` +# bayesAB + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/FrankPortman/bayesAB +* Source code: https://github.com/cran/bayesAB +* Date/Publication: 2021-06-25 00:50:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "bayesAB")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bayesAB) + > + > test_check("bayesAB") + [ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-dists.R:34:3'): Success ────────────────────────────────────── + plotNormalInvGamma(3, 1, 1, 1)$labels$y not equal to "sig_sq". + target is NULL, current is character + + [ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) plotDistributions.Rd:32: Lost braces + 32 | plot{...} functions are generated programmatically so the function calls in + | ^ + ``` + +# BayesERtools + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/BayesERtools +* Date/Publication: 2025-02-12 11:40:22 UTC +* Number of recursive dependencies: 216 + +Run `revdepcheck::cloud_details(, "BayesERtools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Failure ('test-plot_ermod.R:183:5'): plot_er show caption ─────────────────── + `plot_er(...)` produced warnings. + ── Failure ('test-plot_ermod.R:194:3'): plot_er show caption ─────────────────── + `plot_er(...)` produced warnings. + ── Failure ('test-plot_ermod.R:209:5'): plot_er_gof ──────────────────────────── + `plot_er_gof(ermod_bin, show_coef_exp = TRUE, show_caption = TRUE)` produced warnings. + + [ FAIL 8 | WARN 3 | SKIP 0 | PASS 143 ] + Error: Test failures + Execution halted + ``` + +# BayesianReasoning + +
+ +* Version: 0.4.2 +* GitHub: https://github.com/gorkang/BayesianReasoning +* Source code: https://github.com/cran/BayesianReasoning +* Date/Publication: 2023-11-14 11:33:20 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "BayesianReasoning")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(BayesianReasoning) + > + > test_check("BayesianReasoning") + + Plot created in: ./FP_10_sens_100_screening_1667_diagnostic_44.png + + ... + `names(expected)` is absent + ── Failure ('test-PPV_heatmap.R:1097:3'): Plot with line overlay ─────────────── + vapply(p$result$layers, function(x) class(x$geom)[1], "") (`actual`) not identical to c("GeomTile", "GeomSegment", "GeomPoint", "GeomMarkRect") (`expected`). + + `names(actual)` is a character vector ('geom_tile', 'annotate', 'annotate...3', 'geom_mark_rect') + `names(expected)` is absent + + [ FAIL 8 | WARN 16 | SKIP 4 | PASS 115 ] + Error: Test failures + Execution halted + ``` + +# BayesMallows + +
+ +* Version: 2.2.3 +* GitHub: https://github.com/ocbe-uio/BayesMallows +* Source code: https://github.com/cran/BayesMallows +* Date/Publication: 2025-01-14 11:30:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "BayesMallows")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + `expected` is a character vector ('interaction(chain, cluster)') + ── Failure ('test-assess_convergence.R:217:3'): assess_convergence.BayesMallowsMixtures works ── + p$labels$colour (`actual`) not equal to "cluster" (`expected`). + + `actual` is NULL + `expected` is a character vector ('cluster') + + [ FAIL 10 | WARN 0 | SKIP 10 | PASS 363 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 23.8Mb + sub-directories of 1Mb or more: + doc 2.7Mb + libs 20.2Mb + ``` + +# BayesMultiMode + +
+ +* Version: 0.7.3 +* GitHub: https://github.com/paullabonne/BayesMultiMode +* Source code: https://github.com/cran/BayesMultiMode +* Date/Publication: 2024-10-31 15:30:06 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "BayesMultiMode")` for more info + +
+ +## Newly broken + +* checking whether package ‘BayesMultiMode’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/BayesMultiMode/new/BayesMultiMode.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.4Mb + sub-directories of 1Mb or more: + help 6.1Mb + ``` + +# bayesplot + +
+ +* Version: 1.12.0 +* GitHub: https://github.com/stan-dev/bayesplot +* Source code: https://github.com/cran/bayesplot +* Date/Publication: 2025-04-10 10:10:06 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "bayesplot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bayesplot) + This is bayesplot version 1.12.0 + - Online documentation and vignettes at mc-stan.org/bayesplot + - bayesplot theme set to bayesplot::theme_default() + * Does _not_ affect other ggplot2 plots + * See ?bayesplot_theme_set for details on theme setting + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-mcmc-traces.R:59:3'): mcmc_trace options work ──────────────── + all(c("xmin", "xmax", "ymin", "ymax") %in% names(ll)) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 1 | WARN 4 | SKIP 74 | PASS 1032 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.2Mb + sub-directories of 1Mb or more: + R 4.0Mb + doc 3.5Mb + ``` + +# BCClong + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/BCClong +* Date/Publication: 2024-06-24 00:00:02 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "BCClong")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BCClong-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.BCC + > ### Title: Generic plot method for BCC objects + > ### Aliases: plot.BCC + > + > ### ** Examples + > + > # get data from the package + ... + 22. └─vctrs (local) ``() + 23. └─vctrs::vec_default_ptype2(...) + 24. ├─base::withRestarts(...) + 25. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 26. │ └─base (local) doWithOneRestart(return(expr), restart) + 27. └─vctrs::stop_incompatible_type(...) + 28. └─vctrs:::stop_incompatible(...) + 29. └─vctrs:::stop_vctrs(...) + 30. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.4Mb + sub-directories of 1Mb or more: + data 3.3Mb + doc 1.2Mb + libs 6.8Mb + ``` + +# BCEA + +
+ +* Version: 2.4.7 +* GitHub: https://github.com/n8thangreen/BCEA +* Source code: https://github.com/cran/BCEA +* Date/Publication: 2025-01-14 12:30:08 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "BCEA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BCEA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: eib.plot.bcea + > ### Title: Expected Incremental Benefit (EIB) Plot + > ### Aliases: eib.plot.bcea eib.plot + > ### Keywords: hplot + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CEriskav.Rmd’ using rmarkdown + ``` + +# biclustermd + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/jreisner/biclustermd +* Source code: https://github.com/cran/biclustermd +* Date/Publication: 2021-06-17 15:10:06 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "biclustermd")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(biclustermd) + Loading required package: ggplot2 + Loading required package: tidyr + + Attaching package: 'tidyr' + + ... + ── Failure ('test-autoplot_biclustermd.R:6:3'): autoplot_biclustermd() correctly plots cluster lines ── + ap$data[[3]]$xintercept[-1] not equal to cumsum(colSums(sbc$P)) + 0.5. + Classes differ: 'mapped_discrete'/'numeric' is not 'numeric' + ── Failure ('test-autoplot_biclustermd.R:7:3'): autoplot_biclustermd() correctly plots cluster lines ── + ap$data[[4]]$yintercept[-1] not equal to cumsum(colSums(sbc$Q)) + 0.5. + Classes differ: 'mapped_discrete'/'numeric' is not 'numeric' + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 66 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘nycflights13’ + All declared Imports should be used. + ``` + +# BIGL + +
+ +* Version: 1.9.3 +* GitHub: https://github.com/openanalytics/BIGL +* Source code: https://github.com/cran/BIGL +* Date/Publication: 2024-08-01 08:20:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "BIGL")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘analysis.Rmd’ using rmarkdown + ``` + +# BiVariAn + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/AndresFloresG/BiVariAn +* Source code: https://github.com/cran/BiVariAn +* Date/Publication: 2025-03-05 13:10:02 UTC +* Number of recursive dependencies: 199 + +Run `revdepcheck::cloud_details(, "BiVariAn")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BiVariAn-Ex.R’ failed + The error most likely occurred in: + + > ### Name: auto_bar_cont + > ### Title: Automatic barplot of continous variables + > ### Aliases: auto_bar_cont + > + > ### ** Examples + > + > data <- data.frame(group = rep(letters[1:2], 30), + ... + Backtrace: + ▆ + 1. └─BiVariAn::auto_bar_cont(...) + 2. └─ggplot2::scale_y_continuous(...) + 3. └─ggplot2::continuous_scale(...) + 4. └─ggplot2:::check_continuous_limits(limits, call = call) + 5. └─ggplot2:::check_length(limits, 2L, arg = arg, call = call) + 6. └─cli::cli_abort(msg, call = call, arg = arg) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + ── Failure ('test-auto_viol_cont.R:13:3'): auto_violin_cont works ────────────── + capture.output(violinplotlist$var1$layers[[1]])[1] (`actual`) not equal to "geom_violin: draw_quantiles = NULL, na.rm = FALSE, orientation = NA" (`expected`). + + actual vs expected + - "geom_violin: na.rm = FALSE, orientation = NA, quantile_gp = list(colour = NULL, linetype = 0, linewidth = NULL)" + + "geom_violin: draw_quantiles = NULL, na.rm = FALSE, orientation = NA" + + [ FAIL 3 | WARN 2 | SKIP 7 | PASS 119 ] + Error: Test failures + Execution halted + ``` + +# boxly + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/Merck/boxly +* Source code: https://github.com/cran/boxly +* Date/Publication: 2023-10-24 02:40:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "boxly")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 16. ├─plotly::add_trace(...) + 17. │ └─plotly::add_data(p, data) + 18. │ └─plotly:::is.plotly(p) + 19. ├─plotly::ggplotly(p, tooltip = "text", dynamicTicks = TRUE) + 20. └─plotly:::ggplotly.ggplot(p, tooltip = "text", dynamicTicks = TRUE) + 21. └─plotly::gg2list(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 25 ] + Error: Test failures + Execution halted + ``` + +# brolgar + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/njtierney/brolgar +* Source code: https://github.com/cran/brolgar +* Date/Publication: 2024-05-10 14:50:34 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "brolgar")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘brolgar-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_sample + > ### Title: Facet data into groups to facilitate exploration + > ### Aliases: facet_sample + > + > ### ** Examples + > + > library(ggplot2) + > ggplot(heights, + + aes(x = year, + + y = height_cm, + + group = country)) + + + geom_line() + + + facet_sample() + Error in if (params$as.table) { : argument is of length zero + Calls: ... -> setup -> -> compute_layout + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘exploratory-modelling.Rmd’ using rmarkdown + + Quitting from exploratory-modelling.Rmd:46-56 [use-gg-highlight] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'exploratory-modelling.Rmd' failed with diagnostics: + ℹ In index: 1. + ℹ With name: geom_line. + Caused by error in `aes_param_name %in% names(non_null_default_aes) && is.na(non_null_default_aes[[ + aes_param_name]])`: + ! 'length = 2' in coercion to 'logical(1)' + --- failed re-building ‘exploratory-modelling.Rmd’ + + --- re-building ‘finding-features.Rmd’ using rmarkdown + ``` + +# bullseye + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/cbhurley/bullseye +* Source code: https://github.com/cran/bullseye +* Date/Publication: 2025-05-09 10:10:02 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "bullseye")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bullseye-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_nobs_to_pairwise + > ### Title: Adds number of observations column to pairwise tibble + > ### Aliases: add_nobs_to_pairwise + > + > ### ** Examples + > + > irisc <- pairwise_scores(iris[40:150,], by= "Species") + ... + 17. │ └─base::lapply(...) + 18. │ └─ggplot2 (local) FUN(X[[i]], ...) + 19. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 20. │ └─self$draw_panel(...) + 21. └─base::.handleSimpleError(...) + 22. └─rlang (local) h(simpleError(msg, call)) + 23. └─handlers[[1L]](cnd) + 24. └─cli::cli_abort(...) + 25. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘calc_pairwise.Rmd’ using rmarkdown + --- finished re-building ‘calc_pairwise.Rmd’ + + --- re-building ‘integrating.Rmd’ using rmarkdown + ``` + +# canvasXpress + +
+ +* Version: 1.56.1 +* GitHub: https://github.com/neuhausi/canvasXpress +* Source code: https://github.com/cran/canvasXpress +* Date/Publication: 2025-04-08 19:30:02 UTC +* Number of recursive dependencies: 147 + +Run `revdepcheck::cloud_details(, "canvasXpress")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(canvasXpress) + > require(canvasXpress.data) + Loading required package: canvasXpress.data + > + > test_check("canvasXpress") + Loading required package: htmlwidgets + ... + ▆ + 1. ├─base::suppressWarnings(ggplot.as.list(gplot)) at test-other-ggplot_as_list.R:131:5 + 2. │ └─base::withCallingHandlers(...) + 3. └─canvasXpress::ggplot.as.list(gplot) + 4. └─canvasXpress:::gg_cxplot(o, "canvas", ...) + 5. └─canvasXpress:::gg_proc_layer(o, i, bld) + + [ FAIL 1 | WARN 1 | SKIP 480 | PASS 97 ] + Error: Test failures + Execution halted + ``` + +# cartograflow + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/fbahoken/cartogRaflow +* Source code: https://github.com/cran/cartograflow +* Date/Publication: 2023-10-17 22:40:21 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "cartograflow")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cartograflow-Ex.R’ failed + The error most likely occurred in: + + > ### Name: flowgini + > ### Title: Analysis of flow concentration (Gini coefficient) + > ### Aliases: flowgini + > + > ### ** Examples + > + > library(cartograflow) + ... + ℹ Use `flowcum` instead. + Warning: Use of `x$linkcum` is discouraged. + ℹ Use `linkcum` instead. + Warning: Use of `x$flowcum` is discouraged. + ℹ Use `flowcum` instead. + Warning: Use of `x$flowcum` is discouraged. + ℹ Use `flowcum` instead. + Error in pm[[2]] : subscript out of bounds + Calls: flowgini ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# cats + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/cats +* Date/Publication: 2022-03-11 10:20:07 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "cats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: trial_ocs + > ### Title: Calculates the operating characteristics of the cohort trial + > ### Aliases: trial_ocs + > + > ### ** Examples + > + > + ... + + safety_prob = safety_prob, Bayes_Sup1 = Bayes_Sup1, Bayes_Sup2 = Bayes_Sup2, + + cohort_offset = cohort_offset, sr_first_pos = sr_first_pos, + + missing_prob = missing_prob, cohort_fixed = cohort_fixed, accrual_type = accrual_type, + + accrual_param = accrual_param, hist_lag = hist_lag, analysis_times = analysis_times, + + time_trend = time_trend, cohorts_start = cohorts_start, cohorts_sim = cohorts_sim, + + iter = 2, coresnum = 1, save = FALSE, ret_list = TRUE, plot_ocs = TRUE + + ) + Error in pm[[2]] : subscript out of bounds + Calls: trial_ocs -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘epitools’ ‘forcats’ ‘purrr’ + All declared Imports should be used. + ``` + +# centerline + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/atsyplenkov/centerline +* Source code: https://github.com/cran/centerline +* Date/Publication: 2025-03-16 04:40:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "centerline")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘centerline-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_cnt_text + > ### Title: Plot label or text on centerline with ggplot2 + > ### Aliases: geom_cnt_text geom_cnt_label + > + > ### ** Examples + > + > ## Don't show: + ... + 21. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 22. │ └─self$draw_panel(...) + 23. │ └─geomtextpath (local) draw_panel(...) + 24. │ └─geomtextpath:::sf_textgrob(...) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 6. └─base::lapply(...) + 7. └─ggplot2 (local) FUN(X[[i]], ...) + 8. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 9. └─self$draw_panel(...) + 10. └─geomtextpath (local) draw_panel(...) + 11. └─geomtextpath:::sf_textgrob(...) + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 245 ] + Error: Test failures + Execution halted + ``` + +# Certara.Xpose.NLME + +
+ +* Version: 2.0.2 +* GitHub: NA +* Source code: https://github.com/cran/Certara.Xpose.NLME +* Date/Publication: 2025-01-28 15:50:10 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "Certara.Xpose.NLME")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Certara.Xpose.NLME-Ex.R’ failed + The error most likely occurred in: + + > ### Name: eta_vs_cov + > ### Title: ETAs vs covariate Plot + > ### Aliases: eta_vs_cov + > + > ### ** Examples + > + > eta_vs_cov(xpose::xpdb_ex_pk, + ... + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the Certara.Xpose.NLME package. + Please report the issue to the authors. + `geom_smooth()` using formula = 'y ~ x' + `geom_smooth()` using formula = 'y ~ x' + Error in label_variable(labels, multi_line = multi_line) : + could not find function "label_variable" + Calls: ... list2 -> labeller -> lapply -> FUN -> .default -> x + Execution halted + ``` + +# cheem + +
+ +* Version: 0.4.0.0 +* GitHub: https://github.com/nspyrison/cheem +* Source code: https://github.com/cran/cheem +* Date/Publication: 2023-11-08 21:30:02 UTC +* Number of recursive dependencies: 149 + +Run `revdepcheck::cloud_details(, "cheem")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(cheem) + -------------------------------------------------------- + cheem --- version 0.4.0.0 + Please share bugs, suggestions, and feature requests at: + https://github.com/nspyrison/cheem/issues/ + -------------------------------------------------------- + ... + 13. │ ├─utils::modifyList(x %||% list(), y %||% list(), ...) + 14. │ │ └─base::stopifnot(is.list(x), is.list(val)) + 15. │ └─x %||% list() + 16. ├─plotly::ggplotly(...) + 17. └─plotly:::ggplotly.ggplot(...) + 18. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ] + Error: Test failures + Execution halted + ``` + +# choroplethr + +
+ +* Version: 4.0.0 +* GitHub: https://github.com/eastnile/choroplethr +* Source code: https://github.com/cran/choroplethr +* Date/Publication: 2025-04-11 22:10:08 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "choroplethr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘choroplethr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: country_choropleth + > ### Title: Create a country-level choropleth + > ### Aliases: country_choropleth + > + > ### ** Examples + > + > # demonstrate default options + ... + Backtrace: + ▆ + 1. └─choroplethr::country_choropleth(...) + 2. └─c$render() + 3. └─self$get_scale() + 4. └─ggplot2::scale_fill_continuous(...) + 5. └─ggplot2:::scale_backward_compatibility(...) + 6. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 7. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 10 marked UTF-8 strings + ``` + +# chronicle + +
+ +* Version: 0.3 +* GitHub: NA +* Source code: https://github.com/cran/chronicle +* Date/Publication: 2021-06-25 05:00:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "chronicle")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘chronicle-Ex.R’ failed + The error most likely occurred in: + + > ### Name: make_barplot + > ### Title: Create a bar plot from a data frame through ggplotly + > ### Aliases: make_barplot + > + > ### ** Examples + > + > make_barplot(dt = iris, bars = 'Species', value = 'Sepal.Length') + Error in pm[[2]] : subscript out of bounds + Calls: make_barplot -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘chronicle.Rmd’ using rmarkdown + + Quitting from chronicle.Rmd:37-67 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'chronicle.Rmd' failed with diagnostics: + ... + ℹ In index: 1. + Caused by error in `pm[[2]]`: + ! subscript out of bounds + --- failed re-building ‘chronicle.Rmd’ + + SUMMARY: processing the following file failed: + ‘chronicle.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘DT’ ‘dplyr’ ‘prettydoc’ ‘rmdformats’ ‘skimr’ + All declared Imports should be used. + ``` + +# classmap + +
+ +* Version: 1.2.4 +* GitHub: NA +* Source code: https://github.com/cran/classmap +* Date/Publication: 2025-05-13 22:00:02 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "classmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘classmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vcr.forest.newdata + > ### Title: Prepare for visualization of a random forest classification on + > ### new data. + > ### Aliases: vcr.forest.newdata + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 9 marked UTF-8 strings + ``` + +# clinDataReview + +
+ +* Version: 1.6.2 +* GitHub: https://github.com/openanalytics/clinDataReview +* Source code: https://github.com/cran/clinDataReview +* Date/Publication: 2025-04-11 22:10:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "clinDataReview")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘clinDataReview-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scatterplotClinData + > ### Title: Scatterplot of variables of interest for clinical data + > ### visualization. + > ### Aliases: scatterplotClinData + > + > ### ** Examples + > + ... + + data = dataPlot, + + xVar = "ADY", + + yVar = "LBSTRESN", + + aesPointVar = list(color = "TRTP", fill = "TRTP"), + + aesLineVar = list(group = "USUBJID", color = "TRTP"), + + labelVars = labelVars + + ) + Error in pm[[2]] : subscript out of bounds + Calls: scatterplotClinData -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(clinDataReview) + > + > test_check("clinDataReview") + adding: report.html (deflated 63%) + adding: report_dependencies171f62574784/ (stored 0%) + adding: report_dependencies171f62574784/file171fd3e203d.html (deflated 8%) + ... + Backtrace: + ▆ + 1. └─clinDataReview::scatterplotClinData(...) at test_scatterplotClinData.R:1001:3 + 2. ├─plotly::ggplotly(p = gg, width = width, height = height, tooltip = if (!is.null(hoverVars)) "text") + 3. └─plotly:::ggplotly.ggplot(...) + 4. └─plotly::gg2list(...) + + [ FAIL 31 | WARN 0 | SKIP 31 | PASS 466 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘clinDataReview-dataPreprocessing.Rmd’ using rmarkdown + --- finished re-building ‘clinDataReview-dataPreprocessing.Rmd’ + + --- re-building ‘clinDataReview-dataVisualization.Rmd’ using rmarkdown + + Quitting from clinDataReview-dataVisualization.Rmd:169-211 [timeProfiles] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ... + --- failed re-building ‘clinDataReview-dataVisualization.Rmd’ + + --- re-building ‘clinDataReview-reporting.Rmd’ using rmarkdown + --- finished re-building ‘clinDataReview-reporting.Rmd’ + + SUMMARY: processing the following file failed: + ‘clinDataReview-dataVisualization.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 4.3Mb + ``` + +# clinUtils + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/openanalytics/clinUtils +* Source code: https://github.com/cran/clinUtils +* Date/Publication: 2024-05-17 14:50:06 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "clinUtils")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘clinUtils-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.7Mb + sub-directories of 1Mb or more: + doc 6.5Mb + ``` + +# clockSim + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/yeyuan98/clockSim +* Source code: https://github.com/cran/clockSim +* Date/Publication: 2025-04-22 20:10:01 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "clockSim")` for more info + +
+ +## Newly broken + +* checking whether package ‘clockSim’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/clockSim/new/clockSim.Rcheck/00install.out’ for details. + ``` + +# clustcurv + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/noramvillanueva/clustcurv +* Source code: https://github.com/cran/clustcurv +* Date/Publication: 2024-10-25 08:20:07 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "clustcurv")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘clustcurv.Rmd’ using rmarkdown + + Quitting from clustcurv.Rmd:92-94 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'clustcurv.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘clustcurv.Rmd’ + + SUMMARY: processing the following file failed: + ‘clustcurv.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# clustTMB + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/Andrea-Havron/clustTMB +* Source code: https://github.com/cran/clustTMB +* Date/Publication: 2024-10-14 11:50:46 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "clustTMB")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CovarianceStructure.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 82.4Mb + sub-directories of 1Mb or more: + libs 81.9Mb + ``` + +# cnmap + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/PanfengZhang/cnmap +* Source code: https://github.com/cran/cnmap +* Date/Publication: 2024-04-02 12:42:06 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "cnmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cnmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: getMap + > ### Title: China Map Data from AutoNavi Map + > ### Aliases: getMap + > + > ### ** Examples + > + > library(cnmap) + > + > map1 <- getMap(code = "110000") # get the map data of Beijing City + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: getMap ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Introduction.Rmd’ using rmarkdown + + Quitting from Introduction.Rmd:28-35 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `process_cpl_read_ogr()`: + ! package tibble not available: install first? + --- + Backtrace: + ... + + Error: processing vignette 'Introduction.Rmd' failed with diagnostics: + package tibble not available: install first? + --- failed re-building ‘Introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘Introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# cocktailApp + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/shabbychef/cocktailApp +* Source code: https://github.com/cran/cocktailApp +* Date/Publication: 2023-07-19 13:40:09 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "cocktailApp")` for more info + +
+ +## Newly broken + +* checking whether package ‘cocktailApp’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 14729 marked UTF-8 strings + ``` + +# coda.plot + +
+ +* Version: 0.1.9 +* GitHub: NA +* Source code: https://github.com/cran/coda.plot +* Date/Publication: 2025-04-20 21:30:02 UTC +* Number of recursive dependencies: 42 + +Run `revdepcheck::cloud_details(, "coda.plot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘coda.plot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: balance_dendrogram + > ### Title: Compositional Balance Dendrogram + > ### Aliases: balance_dendrogram + > + > ### ** Examples + > + > # Simulated compositional data and balances + > X = matrix(runif(50, 1, 10), ncol = 5) + > colnames(X) = LETTERS[1:5] + > B = pb_basis(X, method = 'exact') + > balance_dendrogram(X, B) + Error in validate_theme(theme) : could not find function "validate_theme" + Calls: ... ggplot_gtable -> ggplot_gtable.ggplot_built -> + Execution halted + ``` + +* checking whether package ‘coda.plot’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details. + ``` + +# cogmapr + +
+ +* Version: 0.9.3 +* GitHub: NA +* Source code: https://github.com/cran/cogmapr +* Date/Publication: 2022-01-04 15:40:07 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "cogmapr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cogmapr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggCMap + > ### Title: Plot a social cognitive map using ggplot2 + > ### Aliases: ggCMap + > + > ### ** Examples + > + > project_name <- "a_new_project" + ... + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. ├─rlang::exec(scale, !!!args) + 5. └─ggplot2 (local) ``(...) + 6. ├─ggplot2::discrete_scale(...) + 7. │ └─ggplot2::ggproto(...) + 8. │ └─rlang::list2(...) + 9. └─ggplot2:::pal_qualitative(type = type) + 10. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 11. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +# CohortPlat + +
+ +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/CohortPlat +* Date/Publication: 2022-02-14 09:30:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "CohortPlat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CohortPlat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_trial + > ### Title: Plots the cohort trial study overview given stage data. + > ### Aliases: plot_trial + > + > ### ** Examples + > + > + ... + + stage_data = stage_data, cohort_random = cohort_random, cohorts_max = cohorts_max, + + sr_drugs_pos = sr_drugs_pos, target_rr = target_rr, sharing_type = sharing_type, + + safety_prob = safety_prob, Bayes_Sup = Bayes_Sup, prob_rr_transform = prob_rr_transform, + + cohort_offset = cohort_offset, Bayes_Fut = Bayes_Fut, sr_first_pos = sr_first_pos + + ) + > + > plot_trial(res_list, unit = "n") + Error in pm[[2]] : subscript out of bounds + Calls: plot_trial -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘my-vignette.Rmd’ using rmarkdown + + Quitting from my-vignette.Rmd:1042-1073 [unnamed-chunk-20] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'my-vignette.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘my-vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘my-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# colorrepel + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/raysinensis/color_repel +* Source code: https://github.com/cran/colorrepel +* Date/Publication: 2025-01-19 04:50:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "colorrepel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘colorrepel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplotly_background + > ### Title: Prepare ggplot object to ggplotly-compatible layer and image + > ### layer + > ### Aliases: ggplotly_background + > + > ### ** Examples + > + > a <- ggplot2::ggplot(ggplot2::mpg, ggplot2::aes(displ, hwy)) + + + ggplot2::geom_point(ggplot2::aes(color = as.factor(cyl))) + > new_colors <- color_repel(a) + > b <- ggplotly_background(a, filename = NULL) + Error in pm[[2]] : subscript out of bounds + Calls: ggplotly_background -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# contsurvplot + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/RobinDenz1/contsurvplot +* Source code: https://github.com/cran/contsurvplot +* Date/Publication: 2023-08-15 08:00:03 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "contsurvplot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(contsurvplot) + Please cite as: + + Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630. + > library(survival) + > library(testthat) + > + ... + • plot_surv_contour/plot-change-horizon.svg + • plot_surv_contour/plot-cif.svg + • plot_surv_contour/plot-custom-colors.svg + • plot_surv_contour/plot-defaults.svg + • plot_surv_contour/plot-lots-of-stuff.svg + • plot_surv_contour/plot-panel-border-axis-dist.svg + • plot_surv_contour/plot-with-group.svg + • plot_surv_heatmap/plot-contour-lines.svg + Error: Test failures + Execution halted + ``` + +# CoreMicrobiomeR + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/CoreMicrobiomeR +* Date/Publication: 2024-04-03 20:03:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "CoreMicrobiomeR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CoreMicrobiomeR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: group_bar_plots + > ### Title: Grouped Bar Plots Based on Sample Size + > ### Aliases: group_bar_plots + > + > ### ** Examples + > + > #To run input data + ... + + top_percentage = 10 # Adjust the percentage as needed for core/non-core OTUs + + ) + Warning encountered during diversity analysis:you have empty rows: their dissimilarities may be + meaningless in method “bray” + > #To run grouped bar plot function + > plot_group_bar <- group_bar_plots(core_1$final_otu_table_bef_filter, + + core_1$final_otu_aft_filter, 10) + Error in pm[[2]] : subscript out of bounds + Calls: group_bar_plots -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# correlationfunnel + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/business-science/correlationfunnel +* Source code: https://github.com/cran/correlationfunnel +* Date/Publication: 2020-06-09 04:40:03 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "correlationfunnel")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + ▆ + 1. ├─correlationfunnel::plot_correlation_funnel(...) at test-plot_correlation_funnel.R:23:1 + 2. └─correlationfunnel:::plot_correlation_funnel.data.frame(...) + 3. ├─plotly::ggplotly(g, tooltip = "text") + 4. └─plotly:::ggplotly.ggplot(g, tooltip = "text") + 5. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 3 | SKIP 0 | PASS 17 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘utils’ + All declared Imports should be used. + ``` + +# corrViz + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/corrViz +* Date/Publication: 2023-06-30 11:40:07 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "corrViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘corrViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: animSolar + > ### Title: animSolar + > ### Aliases: animSolar + > + > ### ** Examples + > + > cm <- cor(mtcars) + ... + All aesthetics have length 1, but the data has 250 rows. + ℹ Please consider using `annotate()` or provide this layer with data containing + a single row. + Warning in geom_text(data = solar_system, aes(x = 0, y = 0, label = sun), : + All aesthetics have length 1, but the data has 250 rows. + ℹ Please consider using `annotate()` or provide this layer with data containing + a single row. + Error in pm[[2]] : subscript out of bounds + Calls: animSolar -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘corrViz.Rmd’ using rmarkdown + + Quitting from corrViz.Rmd:75-81 [heatmap] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'corrViz.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘corrViz.Rmd’ + + SUMMARY: processing the following file failed: + ‘corrViz.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.2Mb + sub-directories of 1Mb or more: + doc 6.7Mb + ``` + +# CoSMoS + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/TycheLab/CoSMoS +* Source code: https://github.com/cran/CoSMoS +* Date/Publication: 2021-05-29 23:20:08 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "CoSMoS")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vignette.Rmd’ using rmarkdown + ``` + +# countfitteR + +
+ +* Version: 1.4 +* GitHub: https://github.com/BioGenies/countfitteR +* Source code: https://github.com/cran/countfitteR +* Date/Publication: 2020-09-30 21:30:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "countfitteR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(countfitteR) + > + > test_check("countfitteR") + [ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ] + + ... + Error in `p$labels[[1]]`: subscript out of bounds + Backtrace: + ▆ + 1. └─testthat::expect_equal(p$labels[[1]], "x") at testing.R:45:3 + 2. └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. └─rlang::eval_bare(expr, quo_get_env(quo)) + + [ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# covidcast + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/cmu-delphi/covidcast +* Source code: https://github.com/cran/covidcast +* Date/Publication: 2023-07-12 23:40:06 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "covidcast")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(covidcast) + We encourage COVIDcast API users to register on our mailing list: + https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api + We'll send announcements about new data sources, package updates, + server maintenance, and new features. + > + ... + • plot/default-county-choropleth.svg + • plot/default-hrr-choropleth-with-include.svg + • plot/default-msa-choropleth-with-include.svg + • plot/default-state-choropleth-with-include.svg + • plot/default-state-choropleth-with-range.svg + • plot/state-choropleth-with-no-metadata.svg + • plot/state-line-graph-with-range.svg + • plot/state-line-graph-with-stderrs.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘correlation-utils.Rmd’ using rmarkdown + --- finished re-building ‘correlation-utils.Rmd’ + + --- re-building ‘covidcast.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 20 marked UTF-8 strings + ``` + +# crmPack + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/openpharma/crmPack +* Source code: https://github.com/cran/crmPack +* Date/Publication: 2024-06-26 15:00:14 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "crmPack")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘guidelines.Rmd’ using rmarkdown + --- finished re-building ‘guidelines.Rmd’ + + --- re-building ‘example.Rnw’ using Sweave + Loading required package: ggplot2 + Registered S3 method overwritten by 'crmPack': + method from + print.gtable gtable + Type crmPackHelp() to open help browser + ... + Error in `vec_slice<-`(`*tmp*`, is.na(match(pal_names, limits)), value = na_value) : + Can't convert `na_value` to . + + --- failed re-building ‘example.Rnw’ + + SUMMARY: processing the following file failed: + ‘example.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘guidelines.Rmd’ using rmarkdown + --- finished re-building ‘guidelines.Rmd’ + + --- re-building ‘example.Rnw’ using Sweave + Loading required package: ggplot2 + Registered S3 method overwritten by 'crmPack': + method from + print.gtable gtable + Type crmPackHelp() to open help browser + ... + l.7 ^^M + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘example.Rnw’ + + SUMMARY: processing the following file failed: + ‘example.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ctrialsgov + +
+ +* Version: 0.2.5 +* GitHub: NA +* Source code: https://github.com/cran/ctrialsgov +* Date/Publication: 2021-10-18 16:00:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "ctrialsgov")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ctrialsgov) + > + > test_check("ctrialsgov") + [NCT04553939] ible Local Advanved |Bladder| Cancer + [NCT03517995] of Sulforaphane in |Bladder| Cancer Chemoprevent + [NCT04210479] Comparison of |Bladder| Filling vs. Non-Fil + ... + ▆ + 1. ├─ctrialsgov::ctgov_to_plotly(p) at test-plot.R:12:3 + 2. └─ctrialsgov:::ctgov_to_plotly.ctgov_bar_plot(p) + 3. ├─plotly::ggplotly(p, tooltip = "text") + 4. └─plotly:::ggplotly.ggplot(p, tooltip = "text") + 5. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 6 | SKIP 0 | PASS 43 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1350 marked UTF-8 strings + ``` + +# cubble + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/huizezhang-sherry/cubble +* Source code: https://github.com/cran/cubble +* Date/Publication: 2024-08-27 15:20:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "cubble")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cb1class.Rmd’ using rmarkdown + --- finished re-building ‘cb1class.Rmd’ + + --- re-building ‘cb2create.Rmd’ using rmarkdown + --- finished re-building ‘cb2create.Rmd’ + + --- re-building ‘cb3tsibblesf.Rmd’ using rmarkdown + --- finished re-building ‘cb3tsibblesf.Rmd’ + + --- re-building ‘cb4glyph.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.6Mb + sub-directories of 1Mb or more: + data 6.0Mb + doc 1.4Mb + ``` + +# cvms + +
+ +* Version: 1.7.0 +* GitHub: https://github.com/ludvigolsen/cvms +* Source code: https://github.com/cran/cvms +* Date/Publication: 2025-03-07 11:30:07 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "cvms")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(cvms) + > + > if (require("xpectr")) { + + test_check("cvms") + + } + Loading required package: xpectr + ... + ── Failure ('test_plotting_functions.R:349:3'): plot_confusion_matrix() with sum tiles, class order, and intensity_by percentage ── + sapply(p2$layers, function(x) class(x$geom)[1]) not equal to c(...). + names for target but not for current + ── Failure ('test_plotting_functions.R:359:3'): plot_confusion_matrix() with sum tiles, class order, and intensity_by percentage ── + `labels` not equal to list(...). + Length mismatch: comparison on first 4 components + + [ FAIL 12 | WARN 0 | SKIP 71 | PASS 3605 ] + Error: Test failures + Execution halted + ``` + +# cylcop + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/r-lib/devtools +* Source code: https://github.com/cran/cylcop +* Date/Publication: 2022-10-29 22:00:21 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "cylcop")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cylcop-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_circ_hist + > ### Title: Circular Histogram of Turn Angles + > ### Aliases: plot_circ_hist + > + > ### ** Examples + > + > set.seed(123) + ... + 22. │ └─l$compute_geom_2(d, theme = plot$theme) + 23. │ └─ggplot2 (local) compute_geom_2(..., self = self) + 24. │ └─self$geom$use_defaults(...) + 25. │ └─ggplot2 (local) use_defaults(..., self = self) + 26. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) + 27. │ └─vctrs::list_sizes(x) + 28. └─vctrs:::stop_scalar_type(``(``), "x$label", ``) + 29. └─vctrs:::stop_vctrs(...) + 30. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) gammamix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gammamix.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gammamix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gammamix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) joint.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) joint.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) joint.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lnormmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lnormmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lnormmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) vonmisesmix.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) vonmisesmix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# cystiSim + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/brechtdv/cystiSim +* Source code: https://github.com/cran/cystiSim +* Date/Publication: 2016-05-15 21:46:33 +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "cystiSim")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cystiSim-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cystiRun + > ### Title: 'cystiRun' object + > ### Aliases: cystiRun initiate update.cystiRun print.cystiRun plot.cystiRun + > ### prevalence + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fit.Rd:37: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.Rd:38: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.Rd:39: Lost braces in \itemize; meant \describe ? + ``` + +# D2MCS + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/drordas/D2MCS +* Source code: https://github.com/cran/D2MCS +* Date/Publication: 2022-08-23 11:40:02 UTC +* Number of recursive dependencies: 178 + +Run `revdepcheck::cloud_details(, "D2MCS")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test_all.R’ + Running the tests in ‘tests/test_all.R’ failed. + Complete output: + > testthat::test_check("D2MCS") + Loading required package: D2MCS + [ FAIL 6 | WARN 5 | SKIP 15 | PASS 702 ] + + ══ Skipped tests (15) ══════════════════════════════════════════════════════════ + • On CRAN (2): 'test_D2MCS.R:129:3', 'test_D2MCS.R:213:3' + • {ranger} is not installed (13): 'test_D2MCS.R:411:3', + ... + 5. └─BinaryPlot$new()$plot(binary.summary) + 6. └─super$plot(summary) + 7. └─ggplot2::scale_color_continuous(...) + 8. └─ggplot2:::scale_backward_compatibility(...) + 9. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 10. └─rlang::abort(...) + + [ FAIL 6 | WARN 5 | SKIP 15 | PASS 702 ] + Error: Test failures + Execution halted + ``` + +# daiquiri + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/ropensci/daiquiri +* Source code: https://github.com/cran/daiquiri +* Date/Publication: 2023-07-18 16:50:09 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "daiquiri")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(daiquiri) + > + > test_check("daiquiri") + + Quitting from report_htmldoc.Rmd:466-528 [daiquiri-individual-fields] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + 36. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 4 | WARN 0 | SKIP 8 | PASS 472 ] + Deleting unused snapshots: + • aggregate_data/test_[ALL_FIELDS_COMBINED].csv + • aggregate_data/test_[DUPLICATES].csv + • aggregate_data/test_col1.csv + • aggregate_data/test_col2.csv + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘daiquiri.Rmd’ using rmarkdown + ``` + +# DAISIEprep + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/joshwlambert/DAISIEprep +* Source code: https://github.com/cran/DAISIEprep +* Date/Publication: 2024-12-18 00:20:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "DAISIEprep")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(DAISIEprep) + > + > test_check("DAISIEprep") + [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] + + ══ Skipped tests (14) ══════════════════════════════════════════════════════════ + ... + ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ─── + `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. + ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ── + `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. + ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ── + `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. + + [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] + Error: Test failures + Execution halted + ``` + +# dampack + +
+ +* Version: 1.0.2.1000 +* GitHub: https://github.com/DARTH-git/dampack +* Source code: https://github.com/cran/dampack +* Date/Publication: 2024-09-30 17:00:06 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "dampack")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dampack-Ex.R’ failed + The error most likely occurred in: + + > ### Name: calc_exp_loss + > ### Title: Calculate the expected loss at a range of willingness-to-pay + > ### thresholds + > ### Aliases: calc_exp_loss + > + > ### ** Examples + > + ... + 5. └─ggplot2:::scale_backward_compatibility(...) + 6. ├─rlang::exec(scale, !!!args) + 7. └─ggplot2 (local) ``(...) + 8. ├─ggplot2::discrete_scale(...) + 9. │ └─ggplot2::ggproto(...) + 10. │ └─rlang::list2(...) + 11. └─ggplot2:::pal_qualitative(type = type) + 12. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 13. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dampack) + Loading required package: ggplot2 + > + > test_check("dampack") + [ FAIL 12 | WARN 0 | SKIP 1 | PASS 122 ] + + ... + 8. ├─ggplot2::discrete_scale(...) + 9. │ └─ggplot2::ggproto(...) + 10. │ └─rlang::list2(...) + 11. └─ggplot2:::pal_qualitative(type = type) + 12. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 13. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 12 | WARN 0 | SKIP 1 | PASS 122 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘basic_cea.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + data 3.0Mb + doc 1.8Mb + ``` + +# deeptime + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/willgearty/deeptime +* Source code: https://github.com/cran/deeptime +* Date/Publication: 2024-10-25 23:30:02 UTC +* Number of recursive dependencies: 195 + +Run `revdepcheck::cloud_details(, "deeptime")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘deeptime-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_grid_color + > ### Title: Lay out panels in a grid with colored strips + > ### Aliases: facet_grid_color FacetGridColor + > ### Keywords: datasets + > + > ### ** Examples + > + > library(ggplot2) + > df <- data.frame(x = 1:10, y = 1:10, period = c("Permian", "Triassic")) + > ggplot(df) + + + geom_point(aes(x, y)) + + + facet_grid_color(cols = vars(period), colors = periods) + Error in match.fun(params$labeller) : + 'params$labeller' is not a function, character or symbol + Calls: ... attach_strips -> -> format_strip_labels -> match.fun + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(deeptime) + > + > test_check("deeptime") + Scale for y is already present. + Adding another scale for y, which will replace the existing scale. + Scale for y is already present. + ... + • patterns/geo-pattern2-new.svg + • patterns/scale-fill-geopattern-labels-new.svg + • patterns/scale-fill-geopattern-limits-new.svg + • patterns/scale-fill-geopattern-na-new.svg + • patterns/scale-fill-geopattern-na2-new.svg + • points_range/geom-points-range-aes-new.svg + • points_range/geom-points-range-bg-new.svg + • points_range/geom-points-range-h-new.svg + Error: Test failures + Execution halted + ``` + +# Dforest + +
+ +* Version: 0.4.2 +* GitHub: NA +* Source code: https://github.com/cran/Dforest +* Date/Publication: 2017-11-28 22:03:57 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "Dforest")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Dforest-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DF_easy + > ### Title: Simple pre-defined pipeline for Decision forest + > ### Aliases: DF_easy + > + > ### ** Examples + > + > # data(demo_simple) + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. └─Dforest::DF_easy(Train_X, Train_Y, Test_X, Test_Y) + 2. └─Dforest::DF_ConfPlot(Pred_result, Test_Y) + 3. └─ggplot2::scale_color_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +# DImodelsVis + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/DImodelsVis +* Date/Publication: 2024-02-26 14:10:15 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "DImodelsVis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DImodelsVis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: conditional_ternary + > ### Title: Conditional ternary diagrams + > ### Aliases: conditional_ternary + > + > ### ** Examples + > + > library(DImodels) + ... + 11. │ └─base::withCallingHandlers(...) + 12. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) + 13. └─l$compute_position(d, layout) + 14. └─ggplot2 (local) compute_position(..., self = self) + 15. └─self$position$use_defaults(data, self$aes_params) + 16. └─ggplot2 (local) use_defaults(..., self = self) + 17. └─ggplot2:::check_aesthetics(new, nrow(data)) + 18. └─cli::cli_abort(...) + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘DImodelsVis-with-complex-models.Rmd’ using rmarkdown + ``` + +# directlabels + +
+ +* Version: 2024.1.21 +* GitHub: https://github.com/tdhock/directlabels +* Source code: https://github.com/cran/directlabels +* Date/Publication: 2024-01-24 19:20:07 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "directlabels")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘examples.Rmd’ using knitr + ``` + +# distributions3 + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/alexpghayes/distributions3 +* Source code: https://github.com/cran/distributions3 +* Date/Publication: 2024-09-16 16:20:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "distributions3")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(distributions3) + + Attaching package: 'distributions3' + + The following object is masked from 'package:stats': + + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot.R:50:3'): ggplot2 implementation works ────────────────── + `print(gg1)` produced warnings. + ── Failure ('test-plot.R:56:3'): ggplot2 implementation works ────────────────── + `print(gg3)` produced warnings. + + [ FAIL 2 | WARN 14 | SKIP 0 | PASS 2766 ] + Error: Test failures + Execution halted + ``` + +# dittoViz + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/dtm2451/dittoViz +* Source code: https://github.com/cran/dittoViz +* Date/Publication: 2025-02-25 18:30:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "dittoViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dittoViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: barPlot + > ### Title: Outputs a stacked bar plot to show the percent composition of + > ### samples, groups, clusters, or other groupings + > ### Aliases: barPlot + > + > ### ** Examples + > + ... + 15 3 D 12 32 0.3750000 + 16 4 D 8 32 0.2500000 + > # through hovering the cursor over the relevant parts of the plot + > if (requireNamespace("plotly", quietly = TRUE)) { + + barPlot(example_df, "clustering", group.by = "groups", + + do.hover = TRUE) + + } + Error in pm[[2]] : subscript out of bounds + Calls: barPlot -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dittoViz) + Loading required package: ggplot2 + > test_check("dittoViz") + Picking joint bandwidth of 11.2 + Picking joint bandwidth of 11.2 + Picking joint bandwidth of 11.2 + ... + 6. └─dittoViz:::.yPlot_add_data_y_direction(...) + 7. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles) + 8. └─ggplot2:::check_numeric(draw_quantiles) + 9. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) + 10. └─ggplot2:::stop_input_type(...) + 11. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 47 | WARN 19 | SKIP 0 | PASS 199 ] + Error: Test failures + Execution halted + ``` + +# dotsViolin + +
+ +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/dotsViolin +* Date/Publication: 2023-10-30 13:20:02 UTC +* Number of recursive dependencies: 37 + +Run `revdepcheck::cloud_details(, "dotsViolin")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dotsViolin-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dots_and_violin + > ### Title: Makes a composite dot-plot and violin-plot + > ### Aliases: dots_and_violin + > ### Keywords: dot-plot violin-plot + > + > ### ** Examples + > + ... + 29. │ └─ggplot2 (local) draw_group(...) + 30. │ ├─ggplot2:::ggname(...) + 31. │ │ └─grid::grobName(grob, prefix) + 32. │ └─ggplot2:::dotstackGrob(...) + 33. └─base::.handleSimpleError(...) + 34. └─rlang (local) h(simpleError(msg, call)) + 35. └─handlers[[1L]](cnd) + 36. └─cli::cli_abort(...) + 37. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings + ``` + +# duke + +
+ +* Version: 0.0.3 +* GitHub: https://github.com/aidangildea/duke +* Source code: https://github.com/cran/duke +* Date/Publication: 2023-12-15 21:50:16 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "duke")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 2. │ └─testthat:::expect_condition_matching(...) + 3. │ └─testthat:::quasi_capture(...) + 4. │ ├─testthat (local) .capture(...) + 5. │ │ └─base::withCallingHandlers(...) + 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) + 7. └─testthat::expect_equal(ggplot2::layer_data(p3)$fill[9], "#B5B5B5") + + [ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘duke.Rmd’ using rmarkdown + ``` + +# easysurv + +
+ +* Version: 2.0.1 +* GitHub: https://github.com/Maple-Health-Group/easysurv +* Source code: https://github.com/cran/easysurv +* Date/Publication: 2024-06-21 10:30:06 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "easysurv")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘easysurv-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_km + > ### Title: Generate Kaplan-Meier estimates + > ### Aliases: get_km + > + > ### ** Examples + > + > km_results <- get_km( + ... + Poor Poor 228 145 3.101736 0.1772520 2.183562 1.978082 2.619178 + Median follow-up + Good 4.452055 + Medium 4.712329 + Poor 4.115068 + + Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = "{n.risk}", : + argument "risktable_height" is missing, with no default + Calls: ... ggsurvfit_build -> -> .construct_risktable + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘easysurv.Rmd’ using rmarkdown + + Quitting from easysurv.Rmd:148-157 [km] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `.construct_risktable()`: + ! argument "risktable_height" is missing, with no default + --- + Backtrace: + ... + + Error: processing vignette 'easysurv.Rmd' failed with diagnostics: + argument "risktable_height" is missing, with no default + --- failed re-building ‘easysurv.Rmd’ + + SUMMARY: processing the following file failed: + ‘easysurv.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# EbayesThresh + +
+ +* Version: 1.4-12 +* GitHub: https://github.com/stephenslab/EbayesThresh +* Source code: https://github.com/cran/EbayesThresh +* Date/Publication: 2017-08-08 04:02:13 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "EbayesThresh")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ebayesthresh.Rmd’ using rmarkdown + ``` + +# ecocbo + +
+ +* Version: 0.12.0 +* GitHub: NA +* Source code: https://github.com/cran/ecocbo +* Date/Publication: 2024-08-21 08:00:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "ecocbo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ecocbo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ecocbo-package + > ### Title: ecocbo: Calculating Optimum Sampling Effort in Community Ecology + > ### Aliases: ecocbo-package ecocbo + > ### Keywords: package + > + > ### ** Examples + > + ... + 39. └─vctrs::vec_default_cast(...) + 40. ├─base::withRestarts(...) + 41. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 42. │ └─base (local) doWithOneRestart(return(expr), restart) + 43. └─vctrs::stop_incompatible_cast(...) + 44. └─vctrs::stop_incompatible_type(...) + 45. └─vctrs:::stop_incompatible(...) + 46. └─vctrs:::stop_vctrs(...) + 47. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Failure ('test-plot_power.R:6:3'): plots are plotted ──────────────────────── + Expected `plot_power(epiBetaR, m = 4, method = "both")` to run without any conditions. + i Actually got a with text: + i In index: 1. + Caused by error in `vec_slice<-`: + ! Can't convert `na_value` to . + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ecocbo-guide.Rmd’ using rmarkdown + + Quitting from ecocbo-guide.Rmd:164-167 [step4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ecocbo-guide.Rmd' failed with diagnostics: + ... + ℹ In index: 1. + Caused by error in `vec_slice<-`: + ! Can't convert `na_value` to . + --- failed re-building ‘ecocbo-guide.Rmd’ + + SUMMARY: processing the following file failed: + ‘ecocbo-guide.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ecolRxC + +
+ +* Version: 0.1.1-10 +* GitHub: NA +* Source code: https://github.com/cran/ecolRxC +* Date/Publication: 2023-03-31 07:50:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "ecolRxC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ecolRxC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.ecolRxC + > ### Title: Graphical representation of a RxC ecological inference (vote + > ### transfer) matrix + > ### Aliases: plot.ecolRxC + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(example, show.plot = FALSE) + 2. └─ecolRxC:::plot.ecolRxC(example, show.plot = FALSE) + 3. └─ggplot2::scale_fill_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ecolRxC.Rd:161-166: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:167-175: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:176-178: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:179-185: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:186-192: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:193-201: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:202-208: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:209-216: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:217-221: Lost braces in \itemize; meant \describe ? + ``` + +# EGM + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/shah-in-boots/EGM +* Source code: https://github.com/cran/EGM +* Date/Publication: 2024-05-23 16:10:05 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "EGM")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(EGM) + Loading required package: vctrs + Loading required package: data.table + > EGM::set_wfdb_path("/usr/local/bin") + > + > test_check("EGM") + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-ggm.R:63:2'): theming works ────────────────────────────────── + g$labels$x (`actual`) not equal to "sample" (`expected`). + + `actual` is NULL + `expected` is a character vector ('sample') + + [ FAIL 1 | WARN 9 | SKIP 19 | PASS 43 ] + Error: Test failures + Execution halted + ``` + +# eiCircles + +
+ +* Version: 0.0.1-12 +* GitHub: NA +* Source code: https://github.com/cran/eiCircles +* Date/Publication: 2025-04-11 11:20:01 UTC +* Number of recursive dependencies: 28 + +Run `revdepcheck::cloud_details(, "eiCircles")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘eiCircles-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.BPF + > ### Title: Graphical representation of a RxC ecological inference (vote + > ### transfer) matrix + > ### Aliases: plot.BPF + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(example, show.plot = FALSE) + 2. └─eiCircles:::plot.BPF(example, show.plot = FALSE) + 3. └─ggplot2::scale_fill_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +# eks + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/eks +* Date/Publication: 2025-05-18 17:30:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "eks")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘eks-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tidyst_kdr + > ### Title: Tidy and geospatial kernel density ridge estimates + > ### Aliases: tidy_kdr st_kdr + > ### Keywords: smooth + > + > ### ** Examples + > ## tidy density ridge estimate + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘tidysf_kde.Rmd’ using rmarkdown + ``` + +# enrichR + +
+ +* Version: 3.4 +* GitHub: NA +* Source code: https://github.com/cran/enrichR +* Date/Publication: 2025-02-02 22:50:06 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "enrichR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘enrichR.Rmd’ using rmarkdown + + Quitting from enrichR.Rmd:159-164 [unnamed-chunk-15] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'enrichR.Rmd' failed with diagnostics: + Unknown scale type: + --- failed re-building ‘enrichR.Rmd’ + + SUMMARY: processing the following file failed: + ‘enrichR.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# epiCleanr + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/truenomad/epiCleanr +* Source code: https://github.com/cran/epiCleanr +* Date/Publication: 2023-09-28 12:20:05 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "epiCleanr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘epiCleanr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: handle_outliers + > ### Title: Detect and Handle Outliers in Dataset + > ### Aliases: handle_outliers + > + > ### ** Examples + > + > + ... + 10. │ └─ggplot2 (local) FUN(X[[i]], ...) + 11. │ └─scale$map_df(df = df) + 12. │ └─ggplot2 (local) map_df(..., self = self) + 13. │ └─base::lapply(aesthetics, function(j) self$map(df[[j]])) + 14. │ └─ggplot2 (local) FUN(X[[i]], ...) + 15. │ └─self$map(df[[j]]) + 16. │ └─ggplot2 (local) map(..., self = self) + 17. │ └─vctrs::`vec_slice<-`(`*tmp*`, is.na(x), value = na_value) + 18. └─rlang::cnd_signal(x) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + doc 2.9Mb + help 2.5Mb + ``` + +# epiphy + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/chgigot/epiphy +* Source code: https://github.com/cran/epiphy +* Date/Publication: 2023-11-16 11:20:10 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "epiphy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘epiphy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: clump + > ### Title: Regroup observational data into even clumps of individuals. + > ### Aliases: clump clump.intensity + > + > ### ** Examples + > + > my_incidence <- incidence(tomato_tswv$field_1929) + ... + 18. │ └─ggplot2 (local) setup_params(...) + 19. │ └─ggplot2:::make_summary_fun(...) + 20. │ └─rlang::as_function(fun.data) + 21. │ └─base::get(x, envir = env, mode = "function") + 22. └─base::.handleSimpleError(...) + 23. └─rlang (local) h(simpleError(msg, call)) + 24. └─handlers[[1L]](cnd) + 25. └─cli::cli_abort(...) + 26. └─rlang::abort(...) + Execution halted + ``` + +# EQUALSTATS + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/EQUALSTATS +* Date/Publication: 2024-09-23 08:30:02 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "EQUALSTATS")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EQUALSTATS-Ex.R’ failed + The error most likely occurred in: + + > ### Name: function.Survival_Analysis + > ### Title: Perform Survival Analysis + > ### Aliases: function.Survival_Analysis + > + > ### ** Examples + > + > # Create simulated data #### + ... + > rv$second_menu_choice <- NA + > rv$entry[[1]] <- "Admission to care home" + > rv$entry[[2]] <- "Follow-up" + > rv$entry[[3]] <- "Treatment" + > # Final function #### + > Results <- function.Survival_Analysis(Predefined_lists, rv) + Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = c("{n.risk}", : + argument "risktable_height" is missing, with no default + Calls: function.Survival_Analysis + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘lmerTest’ + ``` + +# equatiomatic + +
+ +* Version: 0.3.6 +* GitHub: https://github.com/datalorax/equatiomatic +* Source code: https://github.com/cran/equatiomatic +* Date/Publication: 2025-03-10 16:50:09 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "equatiomatic")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘colors.Rmd’ using rmarkdown + --- finished re-building ‘colors.Rmd’ + + --- re-building ‘equatiomatic.Rmd’ using rmarkdown + --- finished re-building ‘equatiomatic.Rmd’ + + --- re-building ‘forecast-arima.Rmd’ using rmarkdown + --- finished re-building ‘forecast-arima.Rmd’ + + --- re-building ‘lme4-lmer.Rmd’ using rmarkdown + --- finished re-building ‘lme4-lmer.Rmd’ + + --- re-building ‘plotting-integration.Rmd’ using rmarkdown + ``` + +# errors + +
+ +* Version: 0.4.3 +* GitHub: https://github.com/r-quantities/errors +* Source code: https://github.com/cran/errors +* Date/Publication: 2025-01-18 18:10:05 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "errors")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘errors-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_errors + > ### Title: Errorbars for 'errors' objects + > ### Aliases: geom_errors + > + > ### ** Examples + > + > if (requireNamespace("ggplot2", quietly=TRUE)) { + ... + 20. │ └─self$draw_panel(data, panel_params, coord, width = 0.05, height = 0.05) + 21. │ └─errors (local) draw_panel(...) + 22. │ ├─base::append(...) + 23. │ └─ggplot2::GeomErrorbarh$draw_panel(...) + 24. └─base::.handleSimpleError(...) + 25. └─rlang (local) h(simpleError(msg, call)) + 26. └─handlers[[1L]](cnd) + 27. └─cli::cli_abort(...) + 28. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘rjournal.Rmd’ using rmarkdown + + Quitting from rjournal.Rmd:252-272 [plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'rjournal.Rmd' failed with diagnostics: + ... + ℹ Error occurred in the 2nd layer. + Caused by error in `draw_panel()`: + ! unused argument (height = NULL) + --- failed re-building ‘rjournal.Rmd’ + + SUMMARY: processing the following file failed: + ‘rjournal.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# eventstudyr + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/JMSLab/eventstudyr +* Source code: https://github.com/cran/eventstudyr +* Date/Publication: 2024-03-04 15:00:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "eventstudyr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(eventstudyr) + > + > test_check("eventstudyr") + Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. + Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. + Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. + ... + `expected` is a character vector ('ci_lower') + ── Failure ('test-EventStudyPlot.R:128:5'): confidence intervals are appropriately present or absent ── + p_ci$labels$ymax (`actual`) not equal to "ci_upper" (`expected`). + + `actual` is NULL + `expected` is a character vector ('ci_upper') + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 258 ] + Error: Test failures + Execution halted + ``` + +# explainer + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/PERSIMUNE/explainer +* Source code: https://github.com/cran/explainer +* Date/Publication: 2024-09-30 17:30:02 UTC +* Number of recursive dependencies: 185 + +Run `revdepcheck::cloud_details(, "explainer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘explainer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: eDecisionCurve + > ### Title: Decision Curve Plot + > ### Aliases: eDecisionCurve + > + > ### ** Examples + > + > library("explainer") + ... + > mylrn$train(maintask, splits$train) + > myplot <- eDecisionCurve( + + task = maintask, + + trained_model = mylrn, + + splits = splits, + + seed = seed + + ) + Error in pm[[2]] : subscript out of bounds + Calls: eDecisionCurve -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘ggpmisc’ + All declared Imports should be used. + ``` + +# ez + +
+ +* Version: 4.4-0 +* GitHub: https://github.com/mike-lawrence/ez +* Source code: https://github.com/cran/ez +* Date/Publication: 2016-11-02 18:17:31 +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ez")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ez-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ezPlot + > ### Title: Plot data from a factorial experiment + > ### Aliases: ezPlot + > + > ### ** Examples + > + > #Read in the ANT data (see ?ANT). + ... + Backtrace: + ▆ + 1. └─ez::ezPlot(...) + 2. ├─base::eval(parse(text = p)) + 3. │ └─base::eval(parse(text = p)) + 4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y") + 5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 6. └─lifecycle:::deprecate_stop0(msg) + 7. └─rlang::cnd_signal(...) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ? + ``` + +# ezEDA + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/kviswana/ezEDA +* Source code: https://github.com/cran/ezEDA +* Date/Publication: 2021-06-29 04:40:10 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ezEDA")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ezEDA) + > + > test_check("ezEDA") + [ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Error ('test_two_measures_relationship.R:19:3'): y axis is labeled 'hwy' ──── + Error in `expect_match(p$labels$y, "hwy")`: is.character(act$val) is not TRUE + Backtrace: + ▆ + 1. └─testthat::expect_match(p$labels$y, "hwy") at test_two_measures_relationship.R:19:3 + 2. └─base::stopifnot(is.character(act$val)) + + [ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ] + Error: Test failures + Execution halted + ``` + +# fabletools + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/tidyverts/fabletools +* Source code: https://github.com/cran/fabletools +* Date/Publication: 2024-09-17 07:30:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "fabletools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-graphics.R:327:3'): autoplot_dcmp_ts() ─────────────────────── + `print(p)` produced warnings. + ── Failure ('test-graphics.R:346:3'): autoplot_dcmp_ts() ─────────────────────── + `print(p)` produced warnings. + + [ FAIL 2 | WARN 5 | SKIP 1 | PASS 292 ] + Error: Test failures + Execution halted + ``` + +# fairmodels + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/ModelOriented/fairmodels +* Source code: https://github.com/cran/fairmodels +* Date/Publication: 2022-08-23 19:50:06 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "fairmodels")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(fairmodels) + > + > + > test_check("fairmodels") + Welcome to DALEX (version: 2.4.3). + Find examples and detailed introduction at: http://ema.drwhy.ai/ + ... + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 312 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_plot_density.R:14:3'): Test plot_density ───────────────────── + plt$labels$x not equal to "probability". + target is NULL, current is character + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 312 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) choose_metric.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) choose_metric.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) choose_metric.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) disparate_impact_remover.Rd:28: Lost braces + 28 | pigeonholing. The number of pigeonholes is fixed and equal to min{101, unique(a)}, where a is vector with values for subgroup. So if some subgroup is not numerous and + | ^ + ... + checkRd: (-1) group_metric.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) group_metric.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) group_metric.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) group_metric.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) metric_scores.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) metric_scores.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# FARS + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/FARS +* Date/Publication: 2025-05-08 10:40:06 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "FARS")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘introduction.Rmd’ using rmarkdown + + Quitting from introduction.Rmd:174-202 [unnamed-chunk-11] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + ... + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# faux + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/debruine/faux +* Source code: https://github.com/cran/faux +* Date/Publication: 2025-01-15 09:10:01 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "faux")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘faux-Ex.R’ failed + The error most likely occurred in: + + > ### Name: norm2likert + > ### Title: Convert normal to likert + > ### Aliases: norm2likert + > + > ### ** Examples + > + > + ... + 2. └─plt$build() + 3. └─private$addLimits(margThemed) + 4. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish) + 5. └─ggplot2::continuous_scale(...) + 6. └─ggplot2:::check_continuous_limits(limits, call = call) + 7. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE) + 8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) + 9. └─ggplot2:::stop_input_type(...) + 10. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(faux) + + ************ + Welcome to faux. For support and examples visit: + https://debruine.github.io/faux/ + - Get and set global package options with: faux_options() + ... + Backtrace: + ▆ + 1. └─global expect_equal(p_value_st$facet$params$labeller(df), value_labs) at test-plot_design.R:420:3 + 2. └─testthat::expect_equal(..., check.environment = FALSE) + 3. └─testthat::quasi_label(enquo(object), label, arg = "object") + 4. └─rlang::eval_bare(expr, quo_get_env(quo)) + + [ FAIL 13 | WARN 0 | SKIP 22 | PASS 1354 ] + Error: Test failures + Execution halted + ``` + +# fdANOVA + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/fdANOVA +* Date/Publication: 2018-08-29 19:54:26 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "fdANOVA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fdANOVA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.fanovatests + > ### Title: Plot P-values of Tests Based on Random Projections for FANOVA + > ### Problem + > ### Aliases: plot.fanovatests + > ### Keywords: Plot + > + > ### ** Examples + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# feasts + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/tidyverts/feasts +* Source code: https://github.com/cran/feasts +* Date/Publication: 2024-09-25 23:40:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "feasts")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(feasts) + Loading required package: fabletools + > + > test_check("feasts") + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 101 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test-graphics.R:192:3'): gg_tsdisplay() plots ─────────────────────── + Error in `p + ggplot2::labs(x = "x", y = "y", title = "title")`: non-numeric argument to binary operator + + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 101 ] + Error: Test failures + Execution halted + ``` + +# fgeo.plot + +
+ +* Version: 1.1.11 +* GitHub: https://github.com/forestgeo/fgeo.plot +* Source code: https://github.com/cran/fgeo.plot +* Date/Publication: 2022-09-03 18:30:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "fgeo.plot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fgeo.plot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot_by_species.sp_elev + > ### Title: List plots of species distribution and topography (good for pdf + > ### output). + > ### Aliases: autoplot_by_species.sp_elev autoplot_by_species.sp + > + > ### ** Examples + > + ... + 5. │ └─fgeo.plot (local) FUN(X[[i]], ...) + 6. │ └─fgeo.plot:::map_pure_elev(...) + 7. │ └─... %>% ... + 8. ├─fgeo.plot:::best_elev_legend(., hide_color_legend = hide_color_legend) + 9. └─fgeo.plot:::add_elevation_contours(...) + 10. └─ggplot2::scale_colour_continuous(low = low, high = high) + 11. └─ggplot2:::scale_backward_compatibility(...) + 12. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 13. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(fgeo.plot) + > + > test_check("fgeo.plot") + [ FAIL 6 | WARN 5 | SKIP 0 | PASS 114 ] + + ... + 9. ├─fgeo.plot:::best_elev_legend(., hide_color_legend = hide_color_legend) + 10. └─fgeo.plot:::add_elevation_contours(...) + 11. └─ggplot2::scale_colour_continuous(low = low, high = high) + 12. └─ggplot2:::scale_backward_compatibility(...) + 13. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 14. └─rlang::abort(...) + + [ FAIL 6 | WARN 5 | SKIP 0 | PASS 114 ] + Error: Test failures + Execution halted + ``` + +# fitdistrplus + +
+ +* Version: 1.2-2 +* GitHub: https://github.com/lbbe-software/fitdistrplus +* Source code: https://github.com/cran/fitdistrplus +* Date/Publication: 2025-01-07 16:00:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "fitdistrplus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fitdistrplus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CIcdfplot + > ### Title: Empirical cumulative distribution function with pointwise + > ### confidence intervals on probabilities or on quantiles + > ### Aliases: CIcdfplot + > ### Keywords: distribution + > + > ### ** Examples + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘t-CIcdfplot.R’ + Running the tests in ‘tests/t-CIcdfplot.R’ failed. + Complete output: + > require("fitdistrplus") + Loading required package: fitdistrplus + Loading required package: MASS + Loading required package: survival + > + > nbboot <- 201 + > nbboot <- 10 + ... + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Warning message: + Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the fitdistrplus package. + Please report the issue at + . + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘FAQ.Rmd’ using rmarkdown + ``` + +# flipr + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/LMJL-Alea/flipr +* Source code: https://github.com/cran/flipr +* Date/Publication: 2023-08-23 09:00:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "flipr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘alternative.Rmd’ using rmarkdown + --- finished re-building ‘alternative.Rmd’ + + --- re-building ‘exactness.Rmd’ using rmarkdown + + Quitting from exactness.Rmd:141-177 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ... + 5. ├─plotly::ggplotly(.) + 6. └─plotly:::ggplotly.ggplot(.) + 7. └─plotly::gg2list(...) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'exactness.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘exactness.Rmd’ + + --- re-building ‘flipr.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.2Mb + sub-directories of 1Mb or more: + doc 9.1Mb + libs 1.4Mb + ``` + +# foqat + +
+ +* Version: 2.0.8.2 +* GitHub: https://github.com/tianshu129/foqat +* Source code: https://github.com/cran/foqat +* Date/Publication: 2023-09-30 06:10:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "foqat")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Air_Quality.Rmd’ using rmarkdown + --- finished re-building ‘Air_Quality.Rmd’ + + --- re-building ‘Atmospheric_Radiation.Rmd’ using rmarkdown + --- finished re-building ‘Atmospheric_Radiation.Rmd’ + + --- re-building ‘Basic_Functions.Rmd’ using rmarkdown + --- finished re-building ‘Basic_Functions.Rmd’ + + --- re-building ‘Particle_Size_Distribution.Rmd’ using rmarkdown + ``` + +# forestPSD + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/forestPSD +* Date/Publication: 2024-11-11 16:50:05 UTC +* Number of recursive dependencies: 45 + +Run `revdepcheck::cloud_details(, "forestPSD")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘forestPSD-Ex.R’ failed + The error most likely occurred in: + + > ### Name: psdfun + > ### Title: Regression analysis for survival curves. + > ### Aliases: psdfun + > + > ### ** Examples + > + > data(Npop) + ... + 13. │ └─l$compute_geom_2(d, theme = plot$theme) + 14. │ └─ggplot2 (local) compute_geom_2(..., self = self) + 15. │ └─self$geom$use_defaults(...) + 16. │ └─ggplot2 (local) use_defaults(..., self = self) + 17. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) + 18. │ └─vctrs::list_sizes(x) + 19. └─vctrs:::stop_scalar_type(``(``), "x$label", ``) + 20. └─vctrs:::stop_vctrs(...) + 21. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘ggplot2’ ‘reshape2’ + All declared Imports should be used. + ``` + +# frailtyEM + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/tbalan/frailtyEM +* Source code: https://github.com/cran/frailtyEM +* Date/Publication: 2019-09-22 13:00:10 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "frailtyEM")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘frailtyEM-Ex.R’ failed + The error most likely occurred in: + + > ### Name: summary.emfrail + > ### Title: Summary for 'emfrail' objects + > ### Aliases: summary.emfrail + > + > ### ** Examples + > + > data("bladder") + ... + filter + + The following object is masked from ‘package:graphics’: + + layout + + > ggplotly(pl2) + Error in pm[[2]] : subscript out of bounds + Calls: ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘frailtyEM_manual.Rnw’ using Sweave + Loading required package: survival + Loading required package: gridExtra + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more + information. + ℹ The deprecated feature was likely used in the frailtyEM + package. + ... + l.179 \RequirePackage{grfext}\relax + ^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘frailtyEM_manual.Rnw’ + + SUMMARY: processing the following file failed: + ‘frailtyEM_manual.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) emfrail_control.Rd:49: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:50: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:51: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:52: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:53-54: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:55-57: Lost braces in \itemize; meant \describe ? + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# func2vis + +
+ +* Version: 1.0-3 +* GitHub: NA +* Source code: https://github.com/cran/func2vis +* Date/Publication: 2023-03-16 17:30:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "func2vis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘func2vis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_pathways + > ### Title: Plot clean enriched pathways as a bubble plot + > ### Aliases: plot_pathways + > + > ### ** Examples + > + > data("t.tests.treatment.sign") + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─func2vis::plot_pathways(revised_pathway) + 2. └─ggplot2::scale_color_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +# gapminder + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/jennybc/gapminder +* Source code: https://github.com/cran/gapminder +* Date/Publication: 2023-03-10 09:50:08 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "gapminder")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gapminder-Ex.R’ failed + The error most likely occurred in: + + > ### Name: country_colors + > ### Title: Gapminder color schemes. + > ### Aliases: country_colors continent_colors + > ### Keywords: datasets + > + > ### ** Examples + > + ... + and is now defunct. + ℹ Please use the `show.legend` argument instead. + Backtrace: + ▆ + 1. └─ggplot2::geom_line(lwd = 1, show_guide = FALSE) + 2. └─ggplot2::layer(...) + 3. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)") + 4. └─lifecycle:::deprecate_stop0(msg) + 5. └─rlang::cnd_signal(...) + Execution halted + ``` + +# GCalignR + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/mottensmann/GCalignR +* Source code: https://github.com/cran/GCalignR +* Date/Publication: 2024-07-03 18:00:01 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "GCalignR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GCalignR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gc_heatmap + > ### Title: Visualises peak alignments in form of a heatmap + > ### Aliases: gc_heatmap + > + > ### ** Examples + > + > + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─GCalignR::gc_heatmap(aligned_peak_data, algorithm_step = "aligned") + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(GCalignR) + > + > test_check("GCalignR") + Run GCalignR + Start: 2025-05-20 10:24:04 + + ... + ▆ + 1. └─GCalignR::gc_heatmap(x) at test-gc_heatmap.R:6:1 + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 1 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘GCalignR_How_does_the_Algorithm_work.Rmd’ using rmarkdown + ``` + +# geneSLOPE + +
+ +* Version: 0.38.2 +* GitHub: https://github.com/psobczyk/geneSLOPE +* Source code: https://github.com/cran/geneSLOPE +* Date/Publication: 2023-08-16 09:12:37 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "geneSLOPE")` for more info + +
+ +## Newly broken + +* checking whether package ‘geneSLOPE’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/geneSLOPE/new/geneSLOPE.Rcheck/00install.out’ for details. + ``` + +# geoheatmap + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/geoheatmap +* Date/Publication: 2024-09-05 15:40:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "geoheatmap")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘geoheatmap.Rmd’ using rmarkdown + + Quitting from geoheatmap.Rmd:75-81 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'geoheatmap.Rmd' failed with diagnostics: + Unknown scale type: + --- failed re-building ‘geoheatmap.Rmd’ + + SUMMARY: processing the following file failed: + ‘geoheatmap.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# geomtextpath + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/AllanCameron/geomtextpath +* Source code: https://github.com/cran/geomtextpath +* Date/Publication: 2025-01-14 17:40:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "geomtextpath")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘geomtextpath-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_textsf + > ### Title: Visualise sf objects with labels + > ### Aliases: geom_textsf geom_labelsf + > + > ### ** Examples + > + > ggplot(waterways) + + ... + 19. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 20. │ └─self$draw_panel(...) + 21. │ └─geomtextpath (local) draw_panel(...) + 22. │ └─geomtextpath:::sf_textgrob(...) + 23. └─base::.handleSimpleError(...) + 24. └─rlang (local) h(simpleError(msg, call)) + 25. └─handlers[[1L]](cnd) + 26. └─cli::cli_abort(...) + 27. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(geomtextpath) + Loading required package: ggplot2 + > + > test_check("geomtextpath") + [ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ] + + ... + `expected` is an expression vector + ── Error ('test-sf.R:91:3'): We can make grobs from sf features ──────────────── + Error in `(x$boxlinewidth %||% defaults$linewidth[type_ind]) * 3.779528`: non-numeric argument to binary operator + Backtrace: + ▆ + 1. └─geomtextpath:::sf_textgrob(river, as_textbox = TRUE) at test-sf.R:91:3 + + [ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ] + Error: Test failures + Execution halted + ``` + +# gg1d + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/selkamand/gg1d +* Source code: https://github.com/cran/gg1d +* Date/Publication: 2024-12-09 19:40:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "gg1d")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gg1d-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg1d + > ### Title: AutoPlot an entire data.frame + > ### Aliases: gg1d + > + > ### ** Examples + > + > path_gg1d <- system.file("example.csv", package = "gg1d") + ... + 28. │ └─base::lapply(...) + 29. │ └─ggplot2 (local) FUN(X[[i]], ...) + 30. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 31. │ └─self$draw_panel(...) + 32. └─base::.handleSimpleError(...) + 33. └─rlang (local) h(simpleError(msg, call)) + 34. └─handlers[[1L]](cnd) + 35. └─cli::cli_abort(...) + 36. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + Expected `gg1d(...)` to run without any errors. + i Actually got a with text: + Problem while converting geom to grob. + i Error occurred in the 1st layer. + Caused by error in `draw_panel()`: + ! unused arguments (lineend = "butt", linejoin = "mitre") + + [ FAIL 9 | WARN 0 | SKIP 2 | PASS 47 ] + Error: Test failures + Execution halted + ``` + +# ggalign + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/Yunuuuu/ggalign +* Source code: https://github.com/cran/ggalign +* Date/Publication: 2025-05-14 14:00:08 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "ggalign")` for more info + +
+ +## Newly broken + +* checking for code/documentation mismatches ... WARNING + ``` + Codoc mismatches from Rd file 'scheme_theme.Rd': + scheme_theme + Code: function(..., line, rect, text, title, point, polygon, geom, + spacing, margins, aspect.ratio, axis.title, + axis.title.x, axis.title.x.top, axis.title.x.bottom, + axis.title.y, axis.title.y.left, axis.title.y.right, + axis.text, axis.text.x, axis.text.x.top, + axis.text.x.bottom, axis.text.y, axis.text.y.left, + axis.text.y.right, axis.text.theta, axis.text.r, + axis.ticks, axis.ticks.x, axis.ticks.x.top, + ... + strip.text.y.right, strip.switch.pad.grid, + strip.switch.pad.wrap, complete = FALSE, validate = + TRUE) + Argument names in code not in docs: + point polygon geom spacing margins legend.key.justification + panel.widths panel.heights + Mismatches in argument names (first 3): + Position: 6 Code: point Docs: aspect.ratio + Position: 7 Code: polygon Docs: axis.title + Position: 8 Code: geom Docs: axis.title.x + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'patchwork', 'ggrastr', 'maftools' + ``` + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’ + ``` + +# GGally + +
+ +* Version: 2.2.1 +* GitHub: https://github.com/ggobi/ggally +* Source code: https://github.com/cran/GGally +* Date/Publication: 2024-02-14 00:53:32 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "GGally")` for more info + +
+ +## Newly broken + +* checking whether package ‘GGally’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/GGally/new/GGally.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘GGally’ ... +** package ‘GGally’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in eval(exprs[i], envir) : object 'is.rel' not found +Error: unable to load R code in package ‘GGally’ +Execution halted +ERROR: lazy loading failed for package ‘GGally’ +* removing ‘/tmp/workdir/GGally/new/GGally.Rcheck/GGally’ + + +``` +### CRAN + +``` +* installing *source* package ‘GGally’ ... +** package ‘GGally’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (GGally) + + +``` +# gganimate + +
+ +* Version: 1.0.9 +* GitHub: https://github.com/thomasp85/gganimate +* Source code: https://github.com/cran/gganimate +* Date/Publication: 2024-02-27 14:00:03 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "gganimate")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gganimate) + Loading required package: ggplot2 + > + > test_check("gganimate") + [ FAIL 2 | WARN 4 | SKIP 1 | PASS 4 ] + + ... + 22. └─self$extract_key(...) + 23. └─ggplot2 (local) extract_key(...) + 24. └─Guide$extract_key(scale, aesthetic, ...) + 25. └─ggplot2 (local) extract_key(...) + 26. └─scale$map(breaks) + 27. └─ggplot2 (local) map(..., self = self) + + [ FAIL 2 | WARN 4 | SKIP 1 | PASS 4 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gganimate.Rmd’ using rmarkdown + ``` + +# ggborderline + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/wurli/ggborderline +* Source code: https://github.com/cran/ggborderline +* Date/Publication: 2022-10-25 13:45:14 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "ggborderline")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggborderline-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_borderpath + > ### Title: Connect observations + > ### Aliases: geom_borderpath geom_borderline geom_borderstep + > + > ### ** Examples + > + > require(ggplot2) + ... + 2. └─ggplot2:::print.ggplot(x) + 3. ├─ggplot2::ggplot_build(x) + 4. └─ggplot2:::ggplot_build.ggplot(x) + 5. └─npscales$set_palettes(plot$theme) + 6. └─ggplot2 (local) set_palettes(..., self = self) + 7. ├─scales::as_discrete_pal(elem) + 8. └─scales:::as_discrete_pal.default(elem) + 9. └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.") + 10. └─rlang::abort(...) + Execution halted + ``` + +# ggcorset + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/kbelisar/ggcorset +* Source code: https://github.com/cran/ggcorset +* Date/Publication: 2024-04-07 13:33:01 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "ggcorset")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘corset_plot_intro.Rmd’ using rmarkdown + + Quitting from corset_plot_intro.Rmd:35-73 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'corset_plot_intro.Rmd' failed with diagnostics: + Can't combine `..1` and `..2` . + --- failed re-building ‘corset_plot_intro.Rmd’ + + SUMMARY: processing the following file failed: + ‘corset_plot_intro.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggdark + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/ggdark +* Date/Publication: 2019-01-11 17:30:06 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "ggdark")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggdark-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dark_mode + > ### Title: Activate dark mode on a 'ggplot2' theme + > ### Aliases: dark_mode + > + > ### ** Examples + > + > library(ggplot2) + ... + > + > p1 <- ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) + + + geom_point() + > + > p1 # theme returned by theme_get() + > p1 + dark_mode() # activate dark mode on theme returned by theme_get() + Error in match(x, table, nomatch = 0L) : + 'match' requires vector arguments + Calls: dark_mode -> %in% + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggdark) + > + > test_check("ggdark") + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Error ('test_dark_mode.R:10:1'): (code run outside of `test_that()`) ──────── + Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments + Backtrace: + ▆ + 1. └─ggdark::dark_mode(light_theme) at test_dark_mode.R:10:1 + 2. └─geoms[["GeomPoint"]]$default_aes$colour %in% ... + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggdemetra + +
+ +* Version: 0.2.8 +* GitHub: https://github.com/AQLT/ggdemetra +* Source code: https://github.com/cran/ggdemetra +* Date/Publication: 2024-02-04 14:50:02 UTC +* Number of recursive dependencies: 52 + +Run `revdepcheck::cloud_details(, "ggdemetra")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggdemetra’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/ggdemetra/new/ggdemetra.Rcheck/00install.out’ for details. + ``` + +# ggDoubleHeat + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/PursuitOfDataScience/ggDoubleHeat +* Source code: https://github.com/cran/ggDoubleHeat +* Date/Publication: 2023-08-24 21:00:04 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "ggDoubleHeat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggDoubleHeat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_heat_circle + > ### Title: Heatcircle + > ### Aliases: geom_heat_circle + > + > ### ** Examples + > + > + ... + + y = rep(c("d", "e", "f"), 3), + + outside_values = rep(c(1,5,7),3), + + inside_values = rep(c(2,3,4),3)) + > + > ggplot(data, aes(x,y)) + + + geom_heat_circle(outside = outside_values, + + inside = inside_values) + Error in scale_title(title) : object 'outside_values' not found + Calls: ... extract_params -> -> make_title -> scale_title + Execution halted + ``` + +# ggEDA + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/CCICB/ggEDA +* Source code: https://github.com/cran/ggEDA +* Date/Publication: 2025-05-07 12:00:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "ggEDA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggEDA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggstack + > ### Title: AutoPlot an entire data.frame + > ### Aliases: ggstack + > + > ### ** Examples + > + > + ... + 28. │ └─base::lapply(...) + 29. │ └─ggplot2 (local) FUN(X[[i]], ...) + 30. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 31. │ └─self$draw_panel(...) + 32. └─base::.handleSimpleError(...) + 33. └─rlang (local) h(simpleError(msg, call)) + 34. └─handlers[[1L]](cnd) + 35. └─cli::cli_abort(...) + 36. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + Expected `ggstack(...)` to run without any errors. + i Actually got a with text: + Problem while converting geom to grob. + i Error occurred in the 1st layer. + Caused by error in `draw_panel()`: + ! unused arguments (lineend = "butt", linejoin = "mitre") + + [ FAIL 11 | WARN 9 | SKIP 2 | PASS 114 ] + Error: Test failures + Execution halted + ``` + +# ggedit + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/yonicd/ggedit +* Source code: https://github.com/cran/ggedit +* Date/Publication: 2024-03-04 14:40:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "ggedit")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggedit-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare + > ### Title: compare + > ### Aliases: compare + > + > ### ** Examples + > + > compare(ggplot2::theme_bw(),ggplot2::theme_get()) + [1] "theme(panel.background=element_rect(fill='white'),panel.grid=element_line(arrow.fill=''#'*EBEBEBFF',colour=''#'*EBEBEBFF'),strip.background=element_rect(colour=''#'*333333FF'))" + > compare(ggplot2::theme_bw(),ggplot2::theme_get(),verbose=FALSE) + Error in parse(text = out) : :2:0: unexpected end of input + 1: theme(panel.background=element_rect(fill='white'),panel.grid=element_line(arrow.fill=''#'*EBEBEBFF',colour=''#'*EBEBEBFF'),strip.background=element_rect(colour=''#'*333333FF')) + ^ + Calls: compare -> eval -> parse + Execution halted + ``` + +# ggenealogy + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/ggenealogy +* Date/Publication: 2024-02-21 16:00:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "ggenealogy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggenealogy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotDegMatrix + > ### Title: Returns the image object to show the heat map of degrees between + > ### the inputted set of vertices + > ### Aliases: plotDegMatrix + > + > ### ** Examples + > + ... + > p + ggplot2::scale_fill_continuous(low = "white", high = "darkgreen") + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_fill_continuous(low = "white", high = "darkgreen") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggenealogy.Rnw’ using Sweave + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + ℹ The deprecated feature was likely used in the ggenealogy + package. + Please report the issue to the authors. + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 + 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggenealogy + ... + Error in scale_backward_compatibility(..., guide = guide, na.value = na.value, : + Unknown scale type: + + --- failed re-building ‘ggenealogy.Rnw’ + + SUMMARY: processing the following file failed: + ‘ggenealogy.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggenealogy.Rnw’ using Sweave + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + ... + l.4 \usepackage + [T1]{fontenc}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘ggenealogy.Rnw’ + + SUMMARY: processing the following file failed: + ‘ggenealogy.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2356 marked UTF-8 strings + ``` + +# ggfixest + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/grantmcdermott/ggfixest +* Source code: https://github.com/cran/ggfixest +* Date/Publication: 2025-05-14 02:20:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "ggfixest")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > ## Throttle CPU threads if R CMD check (for CRAN) + > + > if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) { + + # fixest + + if (requireNamespace("fixest", quietly = TRUE)) { + + library(fixest) + + setFixest_nthreads(1) + ... + call| expect_snapshot_plot(p19a, label = "ggiplot_multi_complex_kitchen_iid") + diff| 1774 + info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png + ----- FAILED[]: test_ggiplot.R<193--193> + call| expect_snapshot_plot(p19b, label = "ggiplot_multi_complex_kitchen_iid") + diff| 1774 + info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png + Error: 5 out of 111 tests failed + In addition: There were 11 warnings (use warnings() to see them) + Execution halted + ``` + +# ggfocus + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/Freguglia/ggfocus +* Source code: https://github.com/cran/ggfocus +* Date/Publication: 2020-01-23 13:20:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "ggfocus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggfocus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggfocus + > ### Title: (Deprecated) Sets focus scales to an existing 'ggplot' object + > ### Aliases: ggfocus + > + > ### ** Examples + > + > library(ggplot2) + ... + > p <- ggplot(iris,aes(x=Sepal.Length,y=Petal.Length)) + geom_point() + > ggfocus(p, Species, "versicolor") + The function 'ggfocus()' is deprecated, consider using the family scale_*_focus() instead. + Warning: `select_()` was deprecated in dplyr 0.7.0. + ℹ Please use `select()` instead. + ℹ The deprecated feature was likely used in the ggfocus package. + Please report the issue at . + Error in scale_title(title) : object 'Species' not found + Calls: ... extract_params -> -> make_title -> scale_title + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggfootball + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/aymennasri/ggfootball +* Source code: https://github.com/cran/ggfootball +* Date/Publication: 2025-03-22 23:00:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "ggfootball")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggfootball-Ex.R’ failed + The error most likely occurred in: + + > ### Name: xg_map + > ### Title: Plot shots xG of a football match + > ### Aliases: xg_map + > + > ### ** Examples + > + > xg_map(26631, title = "xG Map") + Error in self$params$labeller(labels_data) : + attempt to apply non-function + Calls: xg_map ... -> render -> -> draw_panels + Execution halted + ``` + +# ggforce + +
+ +* Version: 0.4.2 +* GitHub: https://github.com/thomasp85/ggforce +* Source code: https://github.com/cran/ggforce +* Date/Publication: 2024-02-19 11:00:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "ggforce")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggforce-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_matrix + > ### Title: Facet by different data columns + > ### Aliases: facet_matrix + > + > ### ** Examples + > + > # Standard use: + > ggplot(mpg) + + + geom_point(aes(x = .panel_x, y = .panel_y)) + + + facet_matrix(vars(displ, cty, hwy)) + Error in match.fun(params$labeller) : + 'params$labeller' is not a function, character or symbol + Calls: ... attach_strips -> -> format_strip_labels -> match.fun + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 27.8Mb + sub-directories of 1Mb or more: + R 1.5Mb + help 1.2Mb + libs 25.0Mb + ``` + +# ggformula + +
+ +* Version: 0.12.0 +* GitHub: https://github.com/ProjectMOSAIC/ggformula +* Source code: https://github.com/cran/ggformula +* Date/Publication: 2023-11-09 12:30:07 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "ggformula")` for more info + +
+ +## Newly broken + +* checking for code/documentation mismatches ... WARNING + ``` + Codoc mismatches from Rd file 'gf_lines.Rd': + gf_hline + Code: function(object = NULL, gformula = NULL, data = NULL, ..., + yintercept, color, linetype, linewidth, alpha, xlab, + ylab, title, subtitle, caption, position = "identity", + show.legend = NA, show.help = NULL, inherit = FALSE, + environment = parent.frame()) + Docs: function(object = NULL, gformula = NULL, data = NULL, ..., + yintercept, color, linetype, linewidth, alpha, xlab, + ylab, title, subtitle, caption, show.legend = NA, + ... + xintercept, color, linetype, linewidth, alpha, xlab, + ylab, title, subtitle, caption, show.legend = NA, + show.help = NULL, inherit = FALSE, environment = + parent.frame()) + Argument names in code not in docs: + position + Mismatches in argument names (first 3): + Position: 15 Code: position Docs: show.legend + Position: 16 Code: show.legend Docs: show.help + Position: 17 Code: show.help Docs: inherit + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘akima’, ‘ggforce’ + ``` + +# ggfortify + +
+ +* Version: 0.4.17 +* GitHub: https://github.com/sinhrks/ggfortify +* Source code: https://github.com/cran/ggfortify +* Date/Publication: 2024-04-17 04:30:04 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "ggfortify")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library(testthat) + > + > suppressWarnings(RNGversion("3.5.0")) + > set.seed(1, sample.kind = "Rejection") + > + > test_check('ggfortify') + Loading required package: ggfortify + ... + + x[3]: "#595959FF" + y[3]: "grey35" + + x[4]: "#595959FF" + y[4]: "grey35" + + [ FAIL 5 | WARN 13 | SKIP 48 | PASS 734 ] + Error: Test failures + Execution halted + ``` + +# ggfun + +
+ +* Version: 0.1.8 +* GitHub: https://github.com/YuLab-SMU/ggfun +* Source code: https://github.com/cran/ggfun +* Date/Publication: 2024-12-03 10:20:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "ggfun")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggfun.Rmd’ using rmarkdown + ``` + +# gggenomes + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/thackl/gggenomes +* Source code: https://github.com/cran/gggenomes +* Date/Publication: 2024-08-30 11:40:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "gggenomes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gggenomes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pick + > ### Title: Pick bins and seqs by name or position + > ### Aliases: pick pick_seqs pick_seqs_within pick_by_tree + > + > ### ** Examples + > + > s0 <- tibble::tibble( + ... + 24. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 25. │ └─self$draw_panel(...) + 26. │ └─ggtree (local) draw_panel(...) + 27. │ └─ggplot2:::empty(data) + 28. └─base::.handleSimpleError(...) + 29. └─rlang (local) h(simpleError(msg, call)) + 30. └─handlers[[1L]](cnd) + 31. └─cli::cli_abort(...) + 32. └─rlang::abort(...) + Execution halted + ``` + +# ggh4x + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/teunbrand/ggh4x +* Source code: https://github.com/cran/ggh4x +* Date/Publication: 2024-12-15 17:20:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "ggh4x")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggh4x-Ex.R’ failed + The error most likely occurred in: + + > ### Name: guide_stringlegend + > ### Title: String legend + > ### Aliases: guide_stringlegend + > + > ### ** Examples + > + > p <- ggplot(mpg, aes(displ, hwy)) + + + geom_point(aes(colour = manufacturer)) + > + > # String legend can be set in the `guides()` function + > p + guides(colour = guide_stringlegend(ncol = 2)) + Error in get_layer_key(...) : + unused argument (list(list("black", 0.5, 1, "butt", FALSE, "black", TRUE), list("white", "black", 0.5, 1, TRUE), list("", "plain", "black", 11, 0.5, 0.5, 0, 0.9, c(0, 0, 0, 0), FALSE, TRUE), list(NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, TRUE), list("black", "white", 19, 1.5, 0.5, TRUE), list("white", "black", 0.5, 1, TRUE), list("black", "white", "#3366FF", 0.5, 0.5, 1, 1, "", 3.86605783866058, 1.5, 19, NULL, NULL, TRUE), 5.5, c(5.5, 5.5, 5.5, 5.5), NULL, NULL, list(NULL, NULL, NULL, NULL, + NULL, 1, NULL, NULL, c(2.75, 0, 0, 0), NULL, TRUE), list(NULL, NULL, NULL, NULL, NULL, 0, NULL, NULL, c(0, 0, 2.75, 0), NULL, TRUE), NULL, list(NULL, NULL, NULL, NULL, NULL, 1, 90, NULL, c(0, 2.75, 0, 0), NULL, TRUE), NULL, list(NULL, NULL, NULL, NULL, NULL, 1, -90, NULL, c(0, 0, 0, 2.75), NULL, TRUE), list(NULL, NULL, "#4D4D4DFF", 0.8, NULL, NULL, NULL, NULL, NULL, NULL, TRUE), list(NULL, NULL, NULL, NULL, NULL, 1, NULL, NULL, c(2.2, 0, 0, 0), NULL, TRUE), list(NULL, + Calls: ... -> -> process_layers -> + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggh4x) + Loading required package: ggplot2 + > + > test_check("ggh4x") + [ FAIL 2 | WARN 296 | SKIP 15 | PASS 661 ] + + ... + 11. └─base::Map(...) + 12. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE) + 13. └─ggplot2 (local) ``(guide = dots[[1L]][[1L]], param = dots[[2L]][[1L]]) + 14. └─guide$process_layers(param, layers, data, theme) + 15. └─ggplot2 (local) process_layers(..., self = self) + 16. └─self$get_layer_key(params, layers[include], data[include], theme) + + [ FAIL 2 | WARN 296 | SKIP 15 | PASS 661 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Facets.Rmd’ using rmarkdown + ``` + +# gghalves + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/erocoar/gghalves +* Source code: https://github.com/cran/gghalves +* Date/Publication: 2022-11-20 11:40:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "gghalves")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gghalves-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_half_point + > ### Title: Points with jitter for half geoms. + > ### Aliases: geom_half_point + > + > ### ** Examples + > + > ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) + + ... + 29. │ └─base::lapply(...) + 30. │ └─ggplot2 (local) FUN(X[[i]], ...) + 31. │ └─ggplot2 (local) apply_fun(cur_data) + 32. │ └─ggplot2 (local) fun(x, ...) + 33. └─base::.handleSimpleError(...) + 34. └─rlang (local) h(simpleError(msg, call)) + 35. └─handlers[[1L]](cnd) + 36. └─cli::cli_abort(...) + 37. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘gghalves.Rmd’ using rmarkdown + + Quitting from gghalves.Rmd:39-42 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'gghalves.Rmd' failed with diagnostics: + ... + ℹ Error occurred in the 1st layer. + Caused by error in `fun()`: + ! argument "layout" is missing, with no default + --- failed re-building ‘gghalves.Rmd’ + + SUMMARY: processing the following file failed: + ‘gghalves.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘grDevices’ ‘gtable’ + All declared Imports should be used. + ``` + +# gghighlight + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/yutannihilation/gghighlight +* Source code: https://github.com/cran/gghighlight +* Date/Publication: 2023-12-16 01:00:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "gghighlight")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gghighlight-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gghighlight + > ### Title: Highlight Data With Predicate + > ### Aliases: gghighlight + > + > ### ** Examples + > + > d <- data.frame( + ... + 8. │ ├─purrr:::with_indexed_errors(...) + 9. │ │ └─base::withCallingHandlers(...) + 10. │ ├─purrr:::call_with_cleanup(...) + 11. │ └─gghighlight (local) .f(.x[[i]], .y[[i]], ...) + 12. │ └─gghighlight:::get_default_aes_param(nm, layer$geom, layer$mapping) + 13. └─base::.handleSimpleError(...) + 14. └─purrr (local) h(simpleError(msg, call)) + 15. └─cli::cli_abort(...) + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gghighlight) + Loading required package: ggplot2 + > + > test_check("gghighlight") + label_key: type + label_key: type + ... + 18. └─cli::cli_abort(...) + 19. └─rlang::abort(...) + + [ FAIL 7 | WARN 6 | SKIP 0 | PASS 159 ] + Deleting unused snapshots: + • vdiffr/simple-bar-chart-with-facet.svg + • vdiffr/simple-line-chart.svg + • vdiffr/simple-point-chart.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gghighlight.Rmd’ using rmarkdown + ``` + +# gghourglass + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/pepijn-devries/gghourglass +* Source code: https://github.com/cran/gghourglass +* Date/Publication: 2025-04-05 14:20:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "gghourglass")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gghourglass-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AnnotateLunarphase + > ### Title: Annotate ggplot with lunar phases + > ### Aliases: AnnotateLunarphase annotate_lunarphase + > ### Keywords: datasets + > + > ### ** Examples + > + ... + 16. │ └─vctrs (local) ``() + 17. │ ├─x[i = i] + 18. │ └─grid:::`[.unit`(x = x, i = i) + 19. │ └─base::stop(...) + 20. └─base::.handleSimpleError(...) + 21. └─rlang (local) h(simpleError(msg, call)) + 22. └─handlers[[1L]](cnd) + 23. └─cli::cli_abort(...) + 24. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gghourglass) + > + > test_check("gghourglass") + NULL + [ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ] + + ... + 23. │ └─base::stop(...) + 24. └─base::.handleSimpleError(...) + 25. └─rlang (local) h(simpleError(msg, call)) + 26. └─handlers[[1L]](cnd) + 27. └─cli::cli_abort(...) + 28. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +# ggiraph + +
+ +* Version: 0.8.13 +* GitHub: https://github.com/davidgohel/ggiraph +* Source code: https://github.com/cran/ggiraph +* Date/Publication: 2025-03-28 10:20:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "ggiraph")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggiraph-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_bar_interactive + > ### Title: Create interactive bars + > ### Aliases: geom_bar_interactive geom_col_interactive + > + > ### ** Examples + > + > # add interactive bar ------- + ... + 20. │ └─base::lapply(...) + 21. │ └─ggplot2 (local) FUN(X[[i]], ...) + 22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 23. │ └─self$draw_panel(...) + 24. └─base::.handleSimpleError(...) + 25. └─rlang (local) h(simpleError(msg, call)) + 26. └─handlers[[1L]](cnd) + 27. └─cli::cli_abort(...) + 28. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if (requireNamespace("tinytest", quietly = TRUE)) { + + tinytest::test_package("ggiraph") + + } + + test-annotate_interactive.R... 0 tests + test-annotate_interactive.R... 0 tests + test-annotate_interactive.R... 0 tests + ... + 30. │ └─base::lapply(...) + 31. │ └─ggplot2 (local) FUN(X[[i]], ...) + 32. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 33. │ └─self$draw_panel(...) + 34. └─base::.handleSimpleError(...) + 35. └─rlang (local) h(simpleError(msg, call)) + 36. └─handlers[[1L]](cnd) + 37. └─cli::cli_abort(...) + 38. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.1Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 5.2Mb + ``` + +# ggiraphExtra + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/cardiomoon/ggiraphExtra +* Source code: https://github.com/cran/ggiraphExtra +* Date/Publication: 2020-10-06 07:00:02 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "ggiraphExtra")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggiraphExtra-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggBar + > ### Title: Draw an interactive barplot + > ### Aliases: ggBar + > + > ### ** Examples + > + > require(moonBook) + ... + 21. │ └─base::lapply(...) + 22. │ └─ggplot2 (local) FUN(X[[i]], ...) + 23. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 24. │ └─self$draw_panel(...) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggPredict.Rmd’ using rmarkdown + ``` + +# gglgbtq + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/turtletopia/gglgbtq +* Source code: https://github.com/cran/gglgbtq +* Date/Publication: 2024-06-25 22:20:02 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "gglgbtq")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gglgbtq-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lgbtq-scales + > ### Title: Apply gglgbtq scales + > ### Aliases: lgbtq-scales scale_color_lgbtq scale_colour_lgbtq + > ### scale_fill_lgbtq + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gglgbtq) + > + > test_check("gglgbtq") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 165 ] + + ... + 29. └─vctrs::stop_incompatible_type(...) + 30. └─vctrs:::stop_incompatible(...) + 31. └─vctrs:::stop_vctrs(...) + 32. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 165 ] + Deleting unused snapshots: + • scales/scale-color.svg + Error: Test failures + Execution halted + ``` + +# ggmap + +
+ +* Version: 4.0.1 +* GitHub: https://github.com/dkahle/ggmap +* Source code: https://github.com/cran/ggmap +* Date/Publication: 2025-04-07 19:40:02 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ggmap")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggmap’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/ggmap/new/ggmap.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.4Mb + sub-directories of 1Mb or more: + data 7.0Mb + ``` + +# ggmice + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/amices/ggmice +* Source code: https://github.com/cran/ggmice +* Date/Publication: 2023-08-07 14:20:02 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "ggmice")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggmice.Rmd’ using rmarkdown + ``` + +# ggmosaic + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/haleyjeppson/ggmosaic +* Source code: https://github.com/cran/ggmosaic +* Date/Publication: 2021-02-23 19:50:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "ggmosaic")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggmosaic’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking dependencies in R code ... NOTE + ``` + ':::' call which should be '::': ‘scales:::censor’ + See the note in ?`:::` about the use of this operator. + Unexported object imported by a ':::' call: ‘productplots:::bound’ + See the note in ?`:::` about the use of this operator. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘ggmosaic’ +Execution halted +ERROR: lazy loading failed for package ‘ggmosaic’ +* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggmosaic) + + +``` +# ggmulti + +
+ +* Version: 1.0.7 +* GitHub: NA +* Source code: https://github.com/cran/ggmulti +* Date/Publication: 2024-04-09 09:40:05 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "ggmulti")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggmulti-Ex.R’ failed + The error most likely occurred in: + + > ### Name: coord_radial + > ### Title: Radial axes + > ### Aliases: coord_radial + > + > ### ** Examples + > + > if(require("dplyr")) { + ... + The following objects are masked from ‘package:base’: + + intersect, setdiff, setequal, union + + Warning: Duplicated aesthetics after name standardisation: PTS + Error in use_defaults(..., self = self) : + unused argument (theme = list(list("black", 0.5, 1, "butt", FALSE, "black", TRUE), list("white", "black", 0.5, 1, TRUE), list("", "plain", "black", 11, 0.5, 0.5, 0, 0.9, c(0, 0, 0, 0), FALSE, TRUE), list(NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, TRUE), list("black", "white", 19, 1.5, 0.5, TRUE), list("white", "black", 0.5, 1, TRUE), list("black", "white", "#3366FF", 0.5, 0.5, 1, 1, "", 3.86605783866058, 1.5, 19, NULL, NULL, TRUE), 5.5, c(5.5, 5.5, 5.5, 5.5), NULL, NULL, list(NULL, NULL, + NULL, NULL, NULL, 1, NULL, NULL, c(2.75, 0, 0, 0), NULL, TRUE), list(NULL, NULL, NULL, NULL, NULL, 0, NULL, NULL, c(0, 0, 2.75, 0), NULL, TRUE), NULL, list(NULL, NULL, NULL, NULL, NULL, 1, 90, NULL, c(0, 2.75, 0, 0), NULL, TRUE), NULL, list(NULL, NULL, NULL, NULL, NULL, 1, -90, NULL, c(0, 0, 0, 2.75), NULL, TRUE), list(NULL, NULL, "#4D4D4DFF", 0.8, NULL, NULL, NULL, NULL, NULL, NULL, TRUE), list(NULL, NULL, NULL, NULL, NULL, 1, NULL, NULL, c(2.2, 0, 0, 0), NULL, TRUE), li + Calls: ... -> -> compute_geom_2 -> + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > + > + > library(testthat) + > library(ggmulti) + Loading required package: ggplot2 + + Attaching package: 'ggmulti' + ... + 16. └─base::Map(...) + 17. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE) + 18. └─ggplot2 (local) ``(layer = dots[[1L]][[1L]], df = dots[[2L]][[1L]]) + 19. └─layer$compute_geom_2(key, single_params, theme) + 20. └─ggplot2 (local) compute_geom_2(..., self = self) + 21. └─self$geom$use_defaults(...) + + [ FAIL 4 | WARN 5 | SKIP 0 | PASS 30 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘glyph.Rmd’ using rmarkdown + ``` + +# ggnewscale + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/eliocamp/ggnewscale +* Source code: https://github.com/cran/ggnewscale +* Date/Publication: 2025-02-24 09:00:02 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "ggnewscale")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggnewscale) + > + > test_check("ggnewscale") + `new_stat_bin2d()` using `bins = 30`. Pick better value `binwidth`. + `new_stat_bin2d()` using `bins = 30`. Pick better value `binwidth`. + `new_stat_bin2d()` using `bins = 30`. Pick better value `binwidth`. + ... + 13. └─scales:::as_discrete_pal.default(elem) + 14. └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.") + 15. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 5 | PASS 3 ] + Deleting unused snapshots: + • newscale/guides-outisde-of-scales.svg + • newscale/respects-override-aes-2.svg + Error: Test failures + Execution halted + ``` + +# ggpackets + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/dgkf/ggpackets +* Source code: https://github.com/cran/ggpackets +* Date/Publication: 2022-10-10 23:30:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ggpackets")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpackets-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggpacket + > ### Title: A container for lazy ggplot layers + > ### Aliases: ggpacket + > + > ### ** Examples + > + > library(ggplot2) + ... + + geom_line(...) %+% + + geom_point(color = "red", ...) + + } + > + > ggplot(mtcars, aes(x = wt, y = mpg)) + + + ggpk_func(color = "purple", size = 2, point.size = 4) + Error in if (grepl("^Ignoring unknown (parameters|aesthetics):", w$message)) invokeRestart("muffleWarning") : + the condition has length > 1 + Calls: +.gg ... withOneRestart -> doWithOneRestart -> signalCondition -> + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘composing-functions.Rmd’ using rmarkdown + ``` + +# ggparallel + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/heike/ggparallel +* Source code: https://github.com/cran/ggparallel +* Date/Publication: 2024-03-09 22:00:02 UTC +* Number of recursive dependencies: 48 + +Run `revdepcheck::cloud_details(, "ggparallel")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 12. │ └─ggplot2::layer_data(..., self = self) + 13. └─base::.handleSimpleError(...) + 14. └─rlang (local) h(simpleError(msg, call)) + 15. └─handlers[[1L]](cnd) + 16. └─cli::cli_abort(...) + 17. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# ggparty + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/martin-borkovec/ggparty +* Source code: https://github.com/cran/ggparty +* Date/Publication: 2019-07-18 10:54:06 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "ggparty")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggparty-graphic-partying.Rmd’ using rmarkdown + + Quitting from ggparty-graphic-partying.Rmd:41-122 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ggparty-graphic-partying.Rmd' failed with diagnostics: + `type` must be a character vector or list of character vectors, not `NULL`. + --- failed re-building ‘ggparty-graphic-partying.Rmd’ + + --- re-building ‘on-the-edge.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘survival’ + All declared Imports should be used. + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggplot2.utils + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/insightsengineering/ggplot2.utils +* Source code: https://github.com/cran/ggplot2.utils +* Date/Publication: 2024-06-25 21:10:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "ggplot2.utils")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggplot2.utils) + Loading required package: ggplot2 + > + > test_check("ggplot2.utils") + + Attaching package: 'dplyr' + ... + ── Failure ('test-geom_km_ticks.R:10:3'): geom_km_ticks works as expected ────── + Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill' + ── Failure ('test-stat_km.R:10:3'): stat_km works as expected ────────────────── + Names of `first_layer` ('time', 'survival', 'PANEL', 'group', 'x', 'y', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha') don't match 'x', 'y', 'time', 'survival', 'PANEL', 'group', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha' + ── Failure ('test-stat_km_ticks.R:10:3'): stat_km_ticks works as expected ────── + Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill' + + [ FAIL 4 | WARN 0 | SKIP 7 | PASS 44 ] + Error: Test failures + Execution halted + ``` + +# ggpointdensity + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/LKremer/ggpointdensity +* Source code: https://github.com/cran/ggpointdensity +* Date/Publication: 2025-05-16 15:30:02 UTC +* Number of recursive dependencies: 48 + +Run `revdepcheck::cloud_details(, "ggpointdensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpointdensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_pointdensity + > ### Title: A cross between a scatter plot and a 2D density plot + > ### Aliases: geom_pointdensity + > + > ### ** Examples + > + > library(ggpointdensity) + ... + + scale_colour_continuous(low = "red", high = "black") + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_colour_continuous(low = "red", high = "black") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +# ggpol + +
+ +* Version: 0.0.7 +* GitHub: https://github.com/erocoar/ggpol +* Source code: https://github.com/cran/ggpol +* Date/Publication: 2020-11-08 13:40:02 UTC +* Number of recursive dependencies: 52 + +Run `revdepcheck::cloud_details(, "ggpol")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpol-Ex.R’ failed + The error most likely occurred in: + + > ### Name: GeomConfmat + > ### Title: Confusion Matrix + > ### Aliases: GeomConfmat geom_confmat stat_confmat + > + > ### ** Examples + > + > x <- sample(LETTERS[seq(4)], 50, replace = TRUE) + ... + 21. │ └─ggpol (local) draw_panel(...) + 22. │ └─base::lapply(GeomText$default_aes[missing_aes], rlang::eval_tidy) + 23. │ └─rlang (local) FUN(X[[i]], ...) + 24. ├─ggplot2::from_theme(fontsize) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘dplyr’ ‘grDevices’ + All declared Imports should be used. + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggpp + +
+ +* Version: 0.5.8-1 +* GitHub: https://github.com/aphalo/ggpp +* Source code: https://github.com/cran/ggpp +* Date/Publication: 2024-07-01 07:40:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "ggpp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_label_s + > ### Title: Linked Text + > ### Aliases: geom_label_s geom_text_s + > + > ### ** Examples + > + > + ... + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. ├─rlang::exec(scale, !!!args) + 4. └─ggplot2 (local) ``(l = 40, na.value = "grey50", call = ``(scale_colour_discrete(l = 40))) + 5. ├─ggplot2::discrete_scale(...) + 6. │ └─ggplot2::ggproto(...) + 7. │ └─rlang::list2(...) + 8. └─ggplot2:::pal_qualitative(type = type) + 9. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 10. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘grammar-extensions.Rmd’ using rmarkdown + ``` + +# ggpubr + +
+ +* Version: 0.6.0 +* GitHub: https://github.com/kassambara/ggpubr +* Source code: https://github.com/cran/ggpubr +* Date/Publication: 2023-02-10 16:20:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "ggpubr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggpubr) + Loading required package: ggplot2 + > + > test_check("ggpubr") + [ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ] + + ... + [6] 6 - 10 == -4 + [7] 19 - 9 == 10 + [9] 1 - 7 == -6 + [10] 6 - 7 == -1 + [11] 13 - 6 == 7 + ... + + [ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ] + Error: Test failures + Execution halted + ``` + +# ggraph + +
+ +* Version: 2.2.1 +* GitHub: https://github.com/thomasp85/ggraph +* Source code: https://github.com/cran/ggraph +* Date/Publication: 2024-03-07 12:40:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "ggraph")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggraph-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_conn_bundle + > ### Title: Create hierarchical edge bundles between node connections + > ### Aliases: geom_conn_bundle geom_conn_bundle2 geom_conn_bundle0 + > + > ### ** Examples + > + > # Create a graph of the flare class system + ... + + ) + + + geom_node_point(aes(filter = leaf, colour = class)) + + + scale_edge_colour_distiller('', direction = 1, guide = 'edge_direction') + + + coord_fixed() + + + ggforce::theme_no_axes() + Error in get_layer_key(...) : + unused argument (list(list("black", 0.5, 1, "butt", FALSE, "black", TRUE), list("white", "black", 0.5, 1, TRUE), list("", "plain", "black", 11, 0.5, 0.5, 0, 0.9, c(0, 0, 0, 0), FALSE, TRUE), list(NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, TRUE), list("black", "white", 19, 1.5, 0.5, TRUE), list("white", "black", 0.5, 1, TRUE), list("black", "white", "#3366FF", 0.5, 0.5, 1, 1, "", 3.86605783866058, 1.5, 19, NULL, NULL, TRUE), 5.5, c(5.5, 5.5, 5.5, 5.5), NULL, list(), list(NULL, NULL, NULL, + NULL, NULL, 1, NULL, NULL, c(2.75, 0, 0, 0), NULL, TRUE), list(NULL, NULL, NULL, NULL, NULL, 0, NULL, NULL, c(0, 0, 2.75, 0), NULL, TRUE), NULL, list(NULL, NULL, NULL, NULL, NULL, 1, 90, NULL, c(0, 2.75, 0, 0), NULL, TRUE), NULL, list(NULL, NULL, NULL, NULL, NULL, 1, -90, NULL, c(0, 0, 0, 2.75), NULL, TRUE), list(), list(NULL, NULL, NULL, NULL, NULL, 1, NULL, NULL, c(2.2, 0, 0, 0), NULL, TRUE), list(NULL, NULL, NULL, NULL, NULL, 0, NULL, NULL, c(0, 0, 2.2, 0), NULL, TRUE) + Calls: ... -> -> process_layers -> + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Edges.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.0Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 3.9Mb + libs 2.8Mb + ``` + +# ggredist + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/alarm-redist/ggredist +* Source code: https://github.com/cran/ggredist +* Date/Publication: 2022-11-23 11:20:02 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "ggredist")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggredist-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_district_text + > ### Title: Label Map Regions + > ### Aliases: geom_district_text geom_district_label + > ### stat_district_coordinates StatDistrictCoordinates GeomDistrictText + > ### Keywords: datasets + > + > ### ** Examples + ... + 22. │ └─coord$transform(data, panel_params) + 23. │ └─ggplot2 (local) transform(..., self = self) + 24. │ └─ggplot2:::sf_rescale01(data[[geom_column(data)]], x_range, y_range) + 25. │ └─sf::st_normalize(x, c(x_range[1], y_range[1], x_range[2], y_range[2])) + 26. └─base::.handleSimpleError(...) + 27. └─rlang (local) h(simpleError(msg, call)) + 28. └─handlers[[1L]](cnd) + 29. └─cli::cli_abort(...) + 30. └─rlang::abort(...) + Execution halted + ``` + +# ggResidpanel + +
+ +* Version: 0.3.0 +* GitHub: NA +* Source code: https://github.com/cran/ggResidpanel +* Date/Publication: 2019-05-31 23:20:04 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "ggResidpanel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggResidpanel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: resid_interact + > ### Title: Panel of Interactive Versions of Diagnostic Residual Plots. + > ### Aliases: resid_interact + > + > ### ** Examples + > + > + > # Fit a model to the penguin data + > penguin_model <- lme4::lmer(heartrate ~ depth + duration + (1|bird), data = penguins) + > + > # Create the default interactive panel + > resid_interact(penguin_model) + Error in pm[[2]] : subscript out of bounds + Calls: resid_interact ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggResidpanel) + > + > test_check("ggResidpanel") + [ FAIL 1 | WARN 4 | SKIP 9 | PASS 18 ] + + ══ Skipped tests (9) ═══════════════════════════════════════════════════════════ + ... + 39. │ └─ggplot2 (local) draw_group(..., self = self) + 40. └─base::.handleSimpleError(...) + 41. └─rlang (local) h(simpleError(msg, call)) + 42. └─handlers[[1L]](cnd) + 43. └─cli::cli_abort(...) + 44. └─rlang::abort(...) + + [ FAIL 1 | WARN 4 | SKIP 9 | PASS 18 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +# ggRtsy + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ggRtsy +* Date/Publication: 2023-09-15 19:12:05 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "ggRtsy")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggplot2) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + ... + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─vctrs::vec_as_location(i, n, names = names, arg = arg, call = call) + 15. └─vctrs (local) ``() + 16. └─vctrs:::stop_subscript_oob(...) + 17. └─vctrs:::stop_subscript(...) + 18. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Vignette.Rmd’ using rmarkdown + + Quitting from Vignette.Rmd:47-49 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Vignette.Rmd' failed with diagnostics: + ... + Can't extract rows past the end. + ℹ Location 1 doesn't exist. + ℹ There are only 0 rows. + --- failed re-building ‘Vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘Vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 19 marked UTF-8 strings + ``` + +# ggseqplot + +
+ +* Version: 0.8.6 +* GitHub: https://github.com/maraab23/ggseqplot +* Source code: https://github.com/cran/ggseqplot +* Date/Publication: 2025-05-06 22:10:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "ggseqplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggseqplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggseqtrplot + > ### Title: Sequence Transition Rate Plot + > ### Aliases: ggseqtrplot + > + > ### ** Examples + > + > # Use example data from TraMineR: biofam data set + ... + 8 7 7 Divorced + [>] sum of weights: 330.07 - min/max: 0/6.02881860733032 + [>] 300 sequences in the data set + [>] min/max sequence length: 16/16 + > + > # Basic transition rate plot (with adjusted x-axis labels) + > ggseqtrplot(biofam.seq, x_n.dodge = 2) + Error in ggseqtrplot(biofam.seq, x_n.dodge = 2) : + labsize must be a single number + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggseqplot) + Loading required package: TraMineR + + TraMineR stable version 2.2-11 (Built: 2024-12-09) + Website: http://traminer.unige.ch + Please type 'citation("TraMineR")' for citation information. + ... + Backtrace: + ▆ + 1. ├─testthat::expect_s3_class(ggseqtrplot(biofam.seq), "ggplot") at test-ggseqtrplot.R:35:3 + 2. │ └─testthat::quasi_label(enquo(object), arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─ggseqplot::ggseqtrplot(biofam.seq) + + [ FAIL 1 | WARN 16 | SKIP 0 | PASS 131 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggseqplot.Rmd’ using rmarkdown + ``` + +# ggside + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/jtlandis/ggside +* Source code: https://github.com/cran/ggside +* Date/Publication: 2024-03-01 09:12:37 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ggside")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggside-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_xsidebar + > ### Title: Side bar Charts + > ### Aliases: geom_xsidebar geom_*sidebar geom_ysidebar geom_xsidecol + > ### geom_ysidecol + > + > ### ** Examples + > + ... + 11. │ └─base::withCallingHandlers(...) + 12. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) + 13. └─l$compute_statistic(d, layout) + 14. └─ggside (local) compute_statistic(..., self = self) + 15. └─ggplot2 (local) ggproto_parent_method(self = self, data = data, layout = layout) + 16. └─self$stat$setup_params(data, self$stat_params) + 17. └─ggplot2 (local) setup_params(..., self = self) + 18. └─cli::cli_abort("{.fn {snake_class(self)}} must only have an {.field x} {.emph or} {.field y} aesthetic.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggplot2) + > library(ggside) + Registered S3 method overwritten by 'ggside': + method from + +.gg ggplot2 + > + ... + • side_layers/label.svg + • side_layers/violin.svg + • vdiff_irisScatter/collapsed-histo.svg + • vdiff_irisScatter/facetgrid-collapsed-density.svg + • vdiff_irisScatter/facetgrid-histo.svg + • vdiff_irisScatter/facetgrid-side-density.svg + • vdiff_irisScatter/stacked-side-density.svg + • vdiff_irisScatter/yside-histo.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggside_aes_mapping.Rmd’ using rmarkdown + + Quitting from ggside_aes_mapping.Rmd:42-46 [ggside_updated_aes_usage] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ggside_aes_mapping.Rmd' failed with diagnostics: + Problem while setting up geom. + ℹ Error occurred in the 2nd layer. + Caused by error in `ggproto_parent_method()`: + ! `geom_xsidedensity()` requires the following missing aesthetics: y. + --- failed re-building ‘ggside_aes_mapping.Rmd’ + + --- re-building ‘ggside_basic_usage.Rmd’ using rmarkdown + ``` + +* checking for code/documentation mismatches ... WARNING + ``` + Codoc mismatches from Rd file 'geom_xsideabline.Rd': + geom_xsidehline + Code: function(mapping = NULL, data = NULL, position = "identity", + ..., yintercept, na.rm = FALSE, show.legend = NA) + Docs: function(mapping = NULL, data = NULL, ..., yintercept, na.rm = + FALSE, show.legend = NA) + Argument names in code not in docs: + position + Mismatches in argument names (first 3): + Position: 3 Code: position Docs: ... + ... + FALSE, show.legend = NA, inherit.aes = TRUE, + orientation = "y") + Argument names in code not in docs: + quantile.colour quantile.color quantile.linetype quantile.linewidth + Mismatches in argument names (first 3): + Position: 6 Code: trim Docs: draw_quantiles + Position: 7 Code: bounds Docs: trim + Position: 8 Code: quantile.colour Docs: bounds + Mismatches in argument default values: + Name: 'draw_quantiles' Code: deprecated() Docs: NULL + ``` + +* checking R code for possible problems ... NOTE + ``` + geom_xsidelabel: no visible global function definition for ‘deprecated’ + geom_xsideviolin: no visible global function definition for + ‘deprecated’ + geom_ysidelabel: no visible global function definition for ‘deprecated’ + geom_ysideviolin: no visible global function definition for + ‘deprecated’ + Undefined global functions or variables: + deprecated + ``` + +# ggswissmaps + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/gibonet/ggswissmaps +* Source code: https://github.com/cran/ggswissmaps +* Date/Publication: 2016-10-29 10:48:24 +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "ggswissmaps")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggswissmaps’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/ggswissmaps/new/ggswissmaps.Rcheck/00install.out’ for details. + ``` + +* checking whether the namespace can be loaded with stated dependencies ... NOTE + ``` + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the ggswissmaps package. + Please report the issue to the authors. + + A namespace must be able to be loaded with just the base namespace + loaded: otherwise if the namespace gets loaded by a saved object, the + session will be unable to start. + + Probably some imports need to be declared in the NAMESPACE file. + ``` + +# ggtern + +
+ +* Version: 3.5.0 +* GitHub: NA +* Source code: https://github.com/cran/ggtern +* Date/Publication: 2024-03-24 21:50:02 UTC +* Number of recursive dependencies: 40 + +Run `revdepcheck::cloud_details(, "ggtern")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggtern’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘chemometrics’ + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘sp’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** demo +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.zero' not found +Error: unable to load R code in package ‘ggtern’ +Execution halted +ERROR: lazy loading failed for package ‘ggtern’ +* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** demo +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggtern) + + +``` +# ggTimeSeries + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/thecomeonman/ggTimeSeries +* Source code: https://github.com/cran/ggTimeSeries +* Date/Publication: 2022-01-23 16:22:42 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "ggTimeSeries")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggTimeSeries-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot_calendar_heatmap + > ### Title: Plots a calendar heatmap + > ### Aliases: ggplot_calendar_heatmap + > + > ### ** Examples + > + > { + ... + . + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_colour_continuous(low = "red", high = "green") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggTimeSeries.Rmd’ using rmarkdown + ``` + +# ggVennDiagram + +
+ +* Version: 1.5.2 +* GitHub: https://github.com/gaospecial/ggVennDiagram +* Source code: https://github.com/cran/ggVennDiagram +* Date/Publication: 2024-02-20 08:10:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "ggVennDiagram")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘VennCalculator.Rmd’ using rmarkdown + --- finished re-building ‘VennCalculator.Rmd’ + + --- re-building ‘fully-customed.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.1Mb + sub-directories of 1Mb or more: + doc 9.5Mb + help 1.1Mb + ``` + +# gprofiler2 + +
+ +* Version: 0.2.3 +* GitHub: NA +* Source code: https://github.com/cran/gprofiler2 +* Date/Publication: 2024-02-23 21:50:02 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "gprofiler2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gprofiler2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gostplot + > ### Title: Manhattan plot of functional enrichment results. + > ### Aliases: gostplot + > + > ### ** Examples + > + > gostres <- gost(c("Klf4", "Pax5", "Sox2", "Nanog"), organism = "mmusculus") + ... + In addition: Warning messages: + 1: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the gprofiler2 package. + Please report the issue at . + 2: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the gprofiler2 package. + Please report the issue at . + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gprofiler2.Rmd’ using rmarkdown + + Quitting from gprofiler2.Rmd:245-247 [unnamed-chunk-14] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `plot$facet$params$labeller()`: + ! attempt to apply non-function + --- + Backtrace: + ... + + Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics: + attempt to apply non-function + --- failed re-building ‘gprofiler2.Rmd’ + + SUMMARY: processing the following file failed: + ‘gprofiler2.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# grafify + +
+ +* Version: 5.0.0.1 +* GitHub: https://github.com/ashenoy-cmbi/grafify +* Source code: https://github.com/cran/grafify +* Date/Publication: 2025-03-10 22:50:02 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "grafify")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(grafify) + Loading required package: ggplot2 + > library(rlang) + + Attaching package: 'rlang' + + ... + Backtrace: + ▆ + 1. └─testthat::expect_match(db2$labels$y, "PI") at test-plot_befafter_colors.R:37:3 + 2. └─base::stopifnot(is.character(act$val)) + ── Failure ('test-plot_qqline.R:14:3'): Check QQ plots ───────────────────────── + as.character(db1$labels$y) is empty. + + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 180 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + help 5.3Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘gratia’ + ``` + +# Greymodels + +
+ +* Version: 2.0.1 +* GitHub: https://github.com/havishaJ/Greymodels +* Source code: https://github.com/cran/Greymodels +* Date/Publication: 2022-12-05 12:42:35 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "Greymodels")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Greymodels-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Plots + > ### Title: plots + > ### Aliases: plots plotrm plotsmv1 plotsmv2 plotsigndgm plots_mdbgm12 + > + > ### ** Examples + > + > # Plots - EPGM (1, 1) model + ... + + geom_point(data = set4, aes(x = CI, y = y), shape = 23, color = "black") + + + geom_line(data = xy1, aes(x = x, y = y,color = "Raw Data")) + + + geom_line(data = xy2, aes(x = x, y = y,color = "Fitted&Forecasts")) + + + geom_line(data = set3, aes(x = CI, y = y,color = "LowerBound"), linetype=2) + + + geom_line(data = set4, aes(x = CI, y = y,color = "UpperBound"), linetype=2) + + + scale_color_manual(name = "Label",values = colors) + > r <- ggplotly(p) + Error in pm[[2]] : subscript out of bounds + Calls: ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# hatchR + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/bmait101/hatchR +* Source code: https://github.com/cran/hatchR +* Date/Publication: 2025-03-05 15:40:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "hatchR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot_check_temp.R:13:3'): plot_check_temp() works ──────────── + `plot_geoms` (`actual`) not identical to c("GeomPoint", "GeomLine", "GeomHline", "GeomHline") (`expected`). + + `names(actual)` is a character vector ('geom_point', 'geom_line', 'geom_hline', 'geom_hline...4') + `names(expected)` is absent + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 38 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.7Mb + sub-directories of 1Mb or more: + data 6.5Mb + doc 1.9Mb + ``` + +# healthyR + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/spsanderson/healthyR +* Source code: https://github.com/cran/healthyR +* Date/Publication: 2024-07-01 13:20:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "healthyR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + data 2.5Mb + doc 3.7Mb + ``` + +# healthyR.ai + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/spsanderson/healthyR.ai +* Source code: https://github.com/cran/healthyR.ai +* Date/Publication: 2025-04-24 11:40:17 UTC +* Number of recursive dependencies: 204 + +Run `revdepcheck::cloud_details(, "healthyR.ai")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘healthyR.ai-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pca_your_recipe + > ### Title: Perform PCA + > ### Aliases: pca_your_recipe + > + > ### ** Examples + > + > suppressPackageStartupMessages(library(timetk)) + ... + + step_rm(matches("(iso$)|(xts$)|(hour)|(min)|(sec)|(am.pm)")) + > + > output_list <- pca_your_recipe(rec_obj, .data = data_tbl) + Warning: ! The following columns have zero variance so scaling cannot be used: + date_col_day, date_col_mday, date_col_mweek, and date_col_mday7. + ℹ Consider using ?step_zv (`?recipes::step_zv()`) to remove those columns + before normalizing. + Error in pm[[2]] : subscript out of bounds + Calls: pca_your_recipe -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘auto-kmeans.Rmd’ using rmarkdown + --- finished re-building ‘auto-kmeans.Rmd’ + + --- re-building ‘getting-started.Rmd’ using rmarkdown + + Quitting from getting-started.Rmd:106-113 [pca_your_rec] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ... + 2. ├─plotly::ggplotly(loadings_plt) + 3. └─plotly:::ggplotly.ggplot(loadings_plt) + 4. └─plotly::gg2list(...) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'getting-started.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘getting-started.Rmd’ + + --- re-building ‘kmeans-umap.Rmd’ using rmarkdown + ``` + +# healthyR.ts + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/spsanderson/healthyR.ts +* Source code: https://github.com/cran/healthyR.ts +* Date/Publication: 2024-10-11 23:00:03 UTC +* Number of recursive dependencies: 210 + +Run `revdepcheck::cloud_details(, "healthyR.ts")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘healthyR.ts-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tidy_fft + > ### Title: Tidy Style FFT + > ### Aliases: tidy_fft + > + > ### ** Examples + > + > suppressPackageStartupMessages(library(dplyr)) + ... + > a <- tidy_fft( + + .data = data_tbl, + + .value_col = value, + + .date_col = date_col, + + .harmonics = 3, + + .frequency = 12 + + ) + Error in pm[[2]] : subscript out of bounds + Calls: tidy_fft -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.3Mb + sub-directories of 1Mb or more: + doc 5.3Mb + ``` + +# heatmaply + +
+ +* Version: 1.5.0 +* GitHub: https://github.com/talgalili/heatmaply +* Source code: https://github.com/cran/heatmaply +* Date/Publication: 2023-10-06 20:50:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "heatmaply")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(heatmaply) + Loading required package: plotly + Loading required package: ggplot2 + + Attaching package: 'plotly' + + ... + 4. │ │ └─base::withCallingHandlers(...) + 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) + 6. ├─heatmaply:::predict_colors(ggplotly(g), plot_method = "ggplot") + 7. ├─plotly::ggplotly(g) + 8. └─plotly:::ggplotly.ggplot(g) + 9. └─plotly::gg2list(...) + + [ FAIL 58 | WARN 0 | SKIP 0 | PASS 193 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘heatmaply.Rmd’ using rmarkdown + + Quitting from heatmaply.Rmd:108-111 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'heatmaply.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘heatmaply.Rmd’ + + SUMMARY: processing the following file failed: + ‘heatmaply.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.5Mb + sub-directories of 1Mb or more: + doc 5.1Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) heatmaply.Rd:282: Lost braces + 282 | row and column dendrograms. The default uses stats{reorder.dendrogram}} + | ^ + checkRd: (-1) heatmapr.Rd:93: Lost braces + 93 | \item{reorderfun}{function(d, w) of dendrogram and weights for reordering the row and column dendrograms. The default uses stats{reorder.dendrogram}} + | ^ + checkRd: (-1) is.plotly.Rd:16: Lost braces + 16 | Helpful for the plot_method in link{heatmaply}. + | ^ + ``` + +# hesim + +
+ +* Version: 0.5.5 +* GitHub: https://github.com/hesim-dev/hesim +* Source code: https://github.com/cran/hesim +* Date/Publication: 2024-09-18 23:10:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "hesim")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(hesim) + > + > test_check("hesim") + sample = 1 + sample = 2 + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ] + ... + ── Failure ('test-plot.R:95:3'): autoplot.stateprobs() allows confidence intervals ── + p$labels$fill not equal to "strategy_id". + target is NULL, current is character + ── Failure ('test-plot.R:99:3'): autoplot.stateprobs() allows confidence intervals ── + p$labels$fill not equal to "strategy_id". + target is NULL, current is character + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 35.9Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 2.2Mb + libs 30.8Mb + ``` + +# hmsidwR + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/Fgazzelloni/hmsidwR +* Source code: https://github.com/cran/hmsidwR +* Date/Publication: 2024-11-13 15:00:02 UTC +* Number of recursive dependencies: 175 + +Run `revdepcheck::cloud_details(, "hmsidwR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘hmsidwR.Rmd’ using rmarkdown + + Quitting from hmsidwR.Rmd:51-84 [unnamed-chunk-6] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + ... + + Error: processing vignette 'hmsidwR.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘hmsidwR.Rmd’ + + SUMMARY: processing the following file failed: + ‘hmsidwR.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.2Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 4.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1686 marked UTF-8 strings + ``` + +# HVT + +
+ +* Version: 25.2.3 +* GitHub: https://github.com/Mu-Sigma/HVT +* Source code: https://github.com/cran/HVT +* Date/Publication: 2025-03-27 11:40:13 UTC +* Number of recursive dependencies: 208 + +Run `revdepcheck::cloud_details(, "HVT")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘HVT-Ex.R’ failed + The error most likely occurred in: + + > ### Name: clustHVT + > ### Title: Performing Hierarchical Clustering Analysis + > ### Aliases: clustHVT + > ### Keywords: Clustering_Analysis + > + > ### ** Examples + > + ... + > scoring <- scoreHVT(dataset, hvt.results, analysis.plots = TRUE, names.column = dataset[,1]) + Scale for colour is already present. + Adding another scale for colour, which will replace the existing scale. + Scale for x is already present. + Adding another scale for x, which will replace the existing scale. + Scale for y is already present. + Adding another scale for y, which will replace the existing scale. + Error in pm[[2]] : subscript out of bounds + Calls: scoreHVT + Execution halted + ``` + +# hypsoLoop + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/hypsoLoop +* Date/Publication: 2022-02-08 09:00:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "hypsoLoop")` for more info + +
+ +## Newly broken + +* checking whether package ‘hypsoLoop’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘hypsoLoop’ + See ‘/tmp/workdir/hypsoLoop/new/hypsoLoop.Rcheck/00install.out’ for details. + ``` + +# ibdsim2 + +
+ +* Version: 2.2.0 +* GitHub: https://github.com/magnusdv/ibdsim2 +* Source code: https://github.com/cran/ibdsim2 +* Date/Publication: 2025-03-03 13:30:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "ibdsim2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ibdsim2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotSegmentDistribution + > ### Title: Scatter plots of IBD segment distributions + > ### Aliases: plotSegmentDistribution + > + > ### ** Examples + > + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# ichimoku + +
+ +* Version: 1.5.6 +* GitHub: https://github.com/shikokuchuo/ichimoku +* Source code: https://github.com/cran/ichimoku +* Date/Publication: 2025-03-14 18:00:05 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "ichimoku")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ichimoku) + > + > test_check("ichimoku") + Data verified by SHA256: 02a4376885505a161032f4f4d4240798c6e776943dbaa54f374f92b2fccea1a9 + Data verified by SHA256: 02a4376885505a161032f4f4d4240798c6e776943dbaa54f374f92b2fccea1a9 + Loading required package: shiny + ... + 31. │ └─base (local) doWithOneRestart(return(expr), restart) + 32. └─vctrs::stop_incompatible_cast(...) + 33. └─vctrs::stop_incompatible_type(...) + 34. └─vctrs:::stop_incompatible(...) + 35. └─vctrs:::stop_vctrs(...) + 36. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 208 ] + Error: Test failures + Execution halted + ``` + +# implicitMeasures + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/implicitMeasures +* Date/Publication: 2022-02-16 13:40:13 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "implicitMeasures")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(implicitMeasures) + > + > test_check("implicitMeasures") + [ FAIL 3 | WARN 2 | SKIP 2 | PASS 73 ] + + ... + 5. └─implicitMeasures::multi_dscore(iat_data, ds = "error-inflation") + 6. └─ggplot2::geom_violin(draw_quantiles = TRUE) + 7. └─ggplot2:::check_numeric(draw_quantiles) + 8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) + 9. └─ggplot2:::stop_input_type(...) + 10. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 3 | WARN 2 | SKIP 2 | PASS 73 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘IAT-example.Rmd’ using rmarkdown + ``` + +# infer + +
+ +* Version: 1.0.8 +* GitHub: https://github.com/tidymodels/infer +* Source code: https://github.com/cran/infer +* Date/Publication: 2025-04-14 17:20:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "infer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + • visualize/viz-assume-z-p-val-right.svg + • visualize/viz-assume-z.svg + • visualize/viz-fit-bare.svg + • visualize/viz-fit-conf-int.svg + • visualize/viz-fit-no-h0.svg + • visualize/viz-fit-p-val-both.svg + • visualize/viz-fit-p-val-left.svg + • visualize/viz-fit-p-val-right.svg + Error: Test failures + Execution halted + ``` + +# inferCSN + +
+ +* Version: 1.1.7 +* GitHub: https://github.com/mengxu98/inferCSN +* Source code: https://github.com/cran/inferCSN +* Date/Publication: 2025-03-30 17:00:02 UTC +* Number of recursive dependencies: 187 + +Run `revdepcheck::cloud_details(, "inferCSN")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘inferCSN-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_dynamic_networks + > ### Title: Plot dynamic networks + > ### Aliases: plot_dynamic_networks + > + > ### ** Examples + > + > data("example_matrix") + ... + + ) + > + > plot_dynamic_networks( + + network, + + celltypes_order = celltypes_order, + + plot_type = "ggplotly" + + ) + Error in pm[[2]] : subscript out of bounds + Calls: plot_dynamic_networks -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 27.7Mb + sub-directories of 1Mb or more: + data 2.0Mb + libs 25.1Mb + ``` + +# injurytools + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/lzumeta/injurytools +* Source code: https://github.com/cran/injurytools +* Date/Publication: 2023-11-14 17:20:05 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "injurytools")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘estimate-epi-measures.Rmd’ using rmarkdown + --- finished re-building ‘estimate-epi-measures.Rmd’ + + --- re-building ‘model-injury-data-i.Rmd’ using rmarkdown + ``` + +# inTextSummaryTable + +
+ +* Version: 3.3.3 +* GitHub: https://github.com/openanalytics/inTextSummaryTable +* Source code: https://github.com/cran/inTextSummaryTable +* Date/Publication: 2024-06-12 18:30:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "inTextSummaryTable")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(inTextSummaryTable) + > + > test_check("inTextSummaryTable") + [ FAIL 59 | WARN 0 | SKIP 0 | PASS 881 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + Error in `geom_point(mapping = do.call(aes, c(aesBase, list(y = sym("meanVar")), + if (!is.null(colorVar) & useShape) list(shape = sym("colorVar")))), + position = pd, size = sizePoint, data = data)`: Problem while setting up geom aesthetics. + ℹ Error occurred in the 2nd layer. + Caused by error in `list_sizes()`: + ! `x$size` must be a vector, not a object. + + [ FAIL 59 | WARN 0 | SKIP 0 | PASS 881 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘inTextSummaryTable-advanced.Rmd’ using rmarkdown + --- finished re-building ‘inTextSummaryTable-advanced.Rmd’ + + --- re-building ‘inTextSummaryTable-aesthetics.Rmd’ using rmarkdown + + Quitting from inTextSummaryTable-aesthetics.Rmd:210-224 [aesthetics-defaultsVisualization] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + Caused by error in `list_sizes()`: + ! `x$size` must be a vector, not a object. + --- failed re-building ‘inTextSummaryTable-visualization.Rmd’ + + SUMMARY: processing the following files failed: + ‘inTextSummaryTable-aesthetics.Rmd’ + ‘inTextSummaryTable-visualization.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.2Mb + sub-directories of 1Mb or more: + doc 9.7Mb + ``` + +# inventorize + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/inventorize +* Date/Publication: 2022-05-31 22:20:09 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "inventorize")` for more info + +
+ +## Newly broken + +* checking whether package ‘inventorize’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in pm[[2]] : subscript out of bounds +Error: unable to load R code in package ‘inventorize’ +Execution halted +ERROR: lazy loading failed for package ‘inventorize’ +* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ + + +``` +### CRAN + +``` +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Warning in qgamma(service_level, alpha, beta) : NaNs produced +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (inventorize) + + +``` +# iNZightTS + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/iNZightVIT/iNZightTS +* Source code: https://github.com/cran/iNZightTS +* Date/Publication: 2024-01-17 06:20:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "iNZightTS")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(iNZightTS) + > + > test_check("iNZightTS") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 9. └─ggplot2::coord_fixed(...) + 10. └─ggplot2::coord_cartesian(ratio = ratio) + 11. └─ggplot2:::check_number_decimal(...) + 12. └─ggplot2:::.stop_not_number(...) + 13. └─ggplot2:::stop_input_type(...) + 14. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘plotly’ + ``` + +# IRon + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/nunompmoniz/IRon +* Source code: https://github.com/cran/IRon +* Date/Publication: 2023-01-20 07:20:06 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "IRon")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘IRon-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sera + > ### Title: Squared Error-Relevance Area (SERA) + > ### Aliases: sera + > + > ### ** Examples + > + > library(IRon) + ... + 16. │ └─self$stat$setup_params(data, self$stat_params) + 17. │ └─ggplot2 (local) setup_params(...) + 18. │ └─base::match.fun(method) + 19. │ └─base::get(as.character(FUN), mode = "function", envir = envir) + 20. └─base::.handleSimpleError(...) + 21. └─rlang (local) h(simpleError(msg, call)) + 22. └─handlers[[1L]](cnd) + 23. └─cli::cli_abort(...) + 24. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.7Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +# karel + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/mpru/karel +* Source code: https://github.com/cran/karel +* Date/Publication: 2022-03-26 21:50:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "karel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘karel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: acciones + > ### Title: Acciones que Karel puede realizar + > ### Aliases: acciones avanzar girar_izquierda poner_coso juntar_coso + > ### girar_derecha darse_vuelta + > + > ### ** Examples + > + ... + 1. └─karel::ejecutar_acciones() + 2. ├─base::suppressWarnings(...) + 3. │ └─base::withCallingHandlers(...) + 4. ├─gganimate::animate(...) + 5. └─gganimate:::animate.gganim(...) + 6. └─args$renderer(frames_vars$frame_source, args$fps) + 7. └─gganimate:::png_dim(frames[1]) + 8. └─cli::cli_abort("Provided file ({file}) does not exist") + 9. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(karel) + > + > test_check("karel") + [ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 5. ├─gganimate::animate(...) + 6. └─gganimate:::animate.gganim(...) + 7. └─args$renderer(frames_vars$frame_source, args$fps) + 8. └─gganimate:::png_dim(frames[1]) + 9. └─cli::cli_abort("Provided file ({file}) does not exist") + 10. └─rlang::abort(...) + + [ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘gifski’ + All declared Imports should be used. + ``` + +# kDGLM + +
+ +* Version: 1.2.7 +* GitHub: https://github.com/silvaneojunior/kDGLM +* Source code: https://github.com/cran/kDGLM +* Date/Publication: 2025-03-20 01:00:03 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "kDGLM")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘kDGLM-Ex.R’ failed + The error most likely occurred in: + + > ### Name: forecast.fitted_dlm + > ### Title: Auxiliary function for forecasting + > ### Aliases: forecast.fitted_dlm + > + > ### ** Examples + > + > + ... + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the kDGLM package. + Please report the issue at . + Scale for y is already present. + Adding another scale for y, which will replace the existing scale. + Error in pm[[2]] : subscript out of bounds + Calls: forecast ... lapply -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘example1.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.9Mb + sub-directories of 1Mb or more: + doc 9.9Mb + ``` + +# khroma + +
+ +* Version: 1.16.0 +* GitHub: NA +* Source code: https://github.com/cran/khroma +* Date/Publication: 2025-02-25 17:40:05 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "khroma")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘khroma-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scale_colour_land + > ### Title: AVHRR Global Land Cover Classification Color Scheme for + > ### 'ggplot2' and 'ggraph' + > ### Aliases: scale_colour_land scale_color_land scale_fill_land + > ### scale_edge_colour_land scale_edge_color_land scale_edge_fill_land + > + > ### ** Examples + ... + 21. └─vctrs::vec_default_cast(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_cast(...) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# L2E + +
+ +* Version: 2.0 +* GitHub: NA +* Source code: https://github.com/cran/L2E +* Date/Publication: 2022-09-08 21:13:00 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "L2E")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘l2e-intro.Rmd’ using rmarkdown + + Quitting from l2e-intro.Rmd:278-294 [unnamed-chunk-14] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'l2e-intro.Rmd' failed with diagnostics: + Can't combine `..1` and `..2` . + --- failed re-building ‘l2e-intro.Rmd’ + + SUMMARY: processing the following file failed: + ‘l2e-intro.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘robustbase’ + All declared Imports should be used. + ``` + +# lans2r + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/KopfLab/lans2r +* Source code: https://github.com/cran/lans2r +* Date/Publication: 2023-02-19 07:20:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "lans2r")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + 4. ├─methods::is(plot_maps(data), "ggplot") + 5. └─lans2r::plot_maps(data) + 6. └─ggplot2::scale_fill_continuous(low = color_scale[1], high = color_scale[2]) + 7. └─ggplot2:::scale_backward_compatibility(...) + 8. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 9. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 143 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘lans2r-calculate.Rmd’ using rmarkdown + ``` + +# latentcor + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/latentcor +* Date/Publication: 2022-09-05 20:50:02 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "latentcor")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘latentcor-Ex.R’ failed + The error most likely occurred in: + + > ### Name: latentcor + > ### Title: Estimate latent correlation for mixed types. + > ### Aliases: latentcor + > + > ### ** Examples + > + > # Example 1 - truncated data type, same type for all variables + ... + > R_approx = latentcor(X = X, types = "tru", method = "approx")$R + > proc.time() - start_time + user system elapsed + 0.025 0.000 0.025 + > # Heatmap for latent correlation matrix. + > Heatmap_R_approx = latentcor(X = X, types = "tru", method = "approx", + + showplot = TRUE)$plotR + Error in pm[[2]] : subscript out of bounds + Calls: latentcor ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) evaluation.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) gen_data.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gen_data.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) get_types.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) interpolation.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) interpolation.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# latrend + +
+ +* Version: 1.6.1 +* GitHub: https://github.com/philips-software/latrend +* Source code: https://github.com/cran/latrend +* Date/Publication: 2024-05-15 11:50:02 UTC +* Number of recursive dependencies: 237 + +Run `revdepcheck::cloud_details(, "latrend")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘latrend-Ex.R’ failed + The error most likely occurred in: + + > ### Name: qqPlot + > ### Title: Quantile-quantile plot + > ### Aliases: qqPlot + > + > ### ** Examples + > + > data(latrendData) + ... + 23. │ └─ggplot2 (local) FUN(X[[i]], ...) + 24. │ └─self$draw_group(group, panel_params, coord, ...) + 25. │ └─ggplot2 (local) draw_group(...) + 26. │ └─ggplot2 (local) draw_group(..., self = self) + 27. └─base::.handleSimpleError(...) + 28. └─rlang (local) h(simpleError(msg, call)) + 29. └─handlers[[1L]](cnd) + 30. └─cli::cli_abort(...) + 31. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘demo.Rmd’ using rmarkdown + ``` + +# lcars + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/leonawicz/lcars +* Source code: https://github.com/cran/lcars +* Date/Publication: 2024-09-11 22:52:42 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "lcars")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lcars-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lcars_border + > ### Title: LCARS border plot + > ### Aliases: lcars_border + > + > ### ** Examples + > + > lcars_border() + ... + Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : + font family '0.5' not found in PostScript font database + Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : + font family '0.5' not found in PostScript font database + Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : + font family '0.5' not found in PostScript font database + Error in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : + invalid font type + Calls: lcars_border ... drawDetails -> drawDetails.text -> grid.Call.graphics + Execution halted + ``` + +# legendry + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/teunbrand/legendry +* Source code: https://github.com/cran/legendry +* Date/Publication: 2025-03-04 22:50:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "legendry")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘legendry-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compose_crux + > ### Title: Compose guides in a cross + > ### Aliases: compose_crux + > + > ### ** Examples + > + > # Roughly recreating a colour bar with extra text on top and bottom + ... + 12. └─legendry (local) draw(..., self = self) + 13. └─self$setup_elements(params, self$elements, theme) + 14. └─legendry (local) setup_elements(...) + 15. └─Guide$setup_elements(params, elements, theme) + 16. └─ggplot2 (local) setup_elements(...) + 17. └─base::lapply(elements[is_char], calc_element, theme = theme) + 18. └─ggplot2 (local) FUN(X[[i]], ...) + 19. └─cli::cli_abort(...) + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + • primitive-fence/primitive-fence-radial.svg + • primitive-labels/primitive-labels-radial.svg + • primitive-line/primitive-line-radial.svg + • primitive-segments/primitive-segments-radial.svg + • primitive-spacer/primitive-spacer-radial.svg + • primitive-ticks/primitive-ticks-radial.svg + • primitive-title/primitive-title-radial.svg + • scale-dendro/scale-dendro-radial.svg + Error: Test failures + Execution halted + ``` + +# lemon + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/stefanedwards/lemon +* Source code: https://github.com/cran/lemon +* Date/Publication: 2024-11-10 18:20:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "lemon")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lemon-Ex.R’ failed + The error most likely occurred in: + + > ### Name: annotate_y_axis + > ### Title: Annotations on the axis + > ### Aliases: annotate_y_axis annotate_x_axis + > + > ### ** Examples + > + > library(ggplot2) + > + > p <- ggplot(mtcars, aes(mpg, hp, colour=disp)) + geom_point() + > + > l <- p + annotate_y_axis('mark at', y=200, tick=TRUE) + > l + Error in identicalUnits(x) : object is not a unit + Calls: ... polylineGrob -> is.unit -> unit.c -> identicalUnits + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(lemon) + > + > + > if (TRUE) { + + test_check("lemon") + + } #else { + ... + 13. └─gtable::gtable_add_row_space(panel_table, theme$panel.spacing.y %||% theme$panel.spacing) + 14. └─cli::cli_abort("{.arg height} must be of length 1 or nrow - 1") + 15. └─rlang::abort(...) + + [ FAIL 2 | WARN 13 | SKIP 3 | PASS 138 ] + Deleting unused snapshots: + • facet/facet-rep-wrap-spacing.svg + • facet_aux/facet-rep-wrap.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘capped-axes.Rmd’ using rmarkdown + ``` + +# lfproQC + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/kabilansbio/lfproQC +* Source code: https://github.com/cran/lfproQC +* Date/Publication: 2024-10-10 13:10:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "lfproQC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lfproQC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Boxplot_data + > ### Title: Creating Boxplot for a dataset + > ### Aliases: Boxplot_data + > + > ### ** Examples + > + > Boxplot_data(yeast_data) + Using Majority protein IDs as id variables + Warning: Removed 269 rows containing non-finite outside the scale range + (`stat_boxplot()`). + Error in pm[[2]] : subscript out of bounds + Calls: Boxplot_data -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘user_guide.Rmd’ using rmarkdown + + Quitting from user_guide.Rmd:54-56 [unnamed-chunk-8] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'user_guide.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘user_guide.Rmd’ + + SUMMARY: processing the following file failed: + ‘user_guide.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# LMoFit + +
+ +* Version: 0.1.7 +* GitHub: NA +* Source code: https://github.com/cran/LMoFit +* Date/Publication: 2024-05-14 07:33:23 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "LMoFit")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘LMoFit.Rmd’ using rmarkdown + + Quitting from LMoFit.Rmd:235-237 [unnamed-chunk-15] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'LMoFit.Rmd' failed with diagnostics: + ... + ℹ Error occurred in the 1st layer. + Caused by error in `is.waive()`: + ! could not find function "is.waive" + --- failed re-building ‘LMoFit.Rmd’ + + SUMMARY: processing the following file failed: + ‘LMoFit.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + data 6.0Mb + ``` + +# lnmixsurv + +
+ +* Version: 3.1.6 +* GitHub: NA +* Source code: https://github.com/cran/lnmixsurv +* Date/Publication: 2024-09-03 15:20:08 UTC +* Number of recursive dependencies: 196 + +Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + + Error in `pm[[2]]`: subscript out of bounds + Backtrace: + ▆ + 1. └─testthat::expect_snapshot(plot(mod1)) at test-survival_ln_mixture_em-methods.R:25:3 + 2. └─rlang::cnd_signal(state$error) + + [ FAIL 1 | WARN 0 | SKIP 7 | PASS 50 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘compare.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.2Mb + sub-directories of 1Mb or more: + doc 4.0Mb + libs 5.8Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘purrr’ ‘readr’ + All declared Imports should be used. + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘rstanarm’ + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# LorenzRegression + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/AlJacq/LorenzRegression +* Source code: https://github.com/cran/LorenzRegression +* Date/Publication: 2024-10-11 16:50:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LorenzRegression-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Lorenz.Reg + > ### Title: Fits a Lorenz regression + > ### Aliases: Lorenz.Reg + > + > ### ** Examples + > + > data(Data.Incomes) + ... + 23. └─vctrs::vec_default_cast(...) + 24. ├─base::withRestarts(...) + 25. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 26. │ └─base (local) doWithOneRestart(return(expr), restart) + 27. └─vctrs::stop_incompatible_cast(...) + 28. └─vctrs::stop_incompatible_type(...) + 29. └─vctrs:::stop_incompatible(...) + 30. └─vctrs:::stop_vctrs(...) + 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# lpdensity + +
+ +* Version: 2.5 +* GitHub: NA +* Source code: https://github.com/cran/lpdensity +* Date/Publication: 2024-10-06 06:50:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "lpdensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lpdensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lpdensity + > ### Title: Local Polynomial Density Estimation and Inference + > ### Aliases: lpdensity + > + > ### ** Examples + > + > # Generate a random sample + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# lphom + +
+ +* Version: 0.3.5-6 +* GitHub: NA +* Source code: https://github.com/cran/lphom +* Date/Publication: 2025-04-11 22:00:06 UTC +* Number of recursive dependencies: 28 + +Run `revdepcheck::cloud_details(, "lphom")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lphom-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.lphom + > ### Title: Graphical representation of a RxC ecological inference (vote + > ### transfer) matrix + > ### Aliases: plot.lphom + > + > ### ** Examples + > + ... + Backtrace: + ▆ + 1. ├─base::plot(mt.ns, show.plot = FALSE) + 2. └─lphom:::plot.lphom(mt.ns, show.plot = FALSE) + 3. └─lphom (local) pintar_con(...) + 4. └─ggplot2::scale_fill_continuous(...) + 5. └─ggplot2:::scale_backward_compatibility(...) + 6. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 7. └─rlang::abort(...) + Execution halted + ``` + +# lspartition + +
+ +* Version: 0.5 +* GitHub: NA +* Source code: https://github.com/cran/lspartition +* Date/Publication: 2025-04-29 10:30:06 UTC +* Number of recursive dependencies: 32 + +Run `revdepcheck::cloud_details(, "lspartition")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lspartition-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lsprobust.plot + > ### Title: Graphic Presentation of Results for 'lspartition' Package + > ### Aliases: lsprobust.plot + > + > ### ** Examples + > + > x <- runif(500) + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# manynet + +
+ +* Version: 1.3.2 +* GitHub: https://github.com/stocnet/manynet +* Source code: https://github.com/cran/manynet +* Date/Publication: 2024-11-05 20:50:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "manynet")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + tutorials 1.9Mb + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘Rgraphviz’ + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 7 marked UTF-8 strings + ``` + +# mapindia + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/shubhamdutta26/mapindia +* Source code: https://github.com/cran/mapindia +* Date/Publication: 2024-11-14 16:10:07 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "mapindia")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting_started.Rmd’ using rmarkdown + ``` + +# marquee + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/r-lib/marquee +* Source code: https://github.com/cran/marquee +* Date/Publication: 2025-01-20 16:01:56 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "marquee")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘marquee-Ex.R’ failed + The error most likely occurred in: + + > ### Name: guide_marquee + > ### Title: Marquee subtitle guide + > ### Aliases: guide_marquee + > + > ### ** Examples + > + > ## Don't show: + ... + Warning in split.default(glyphs, rep(seq_len(n_breaks), each = n_layers)) : + data length is not a multiple of split variable + Warning in max(unlist(width)) : + no non-missing arguments to max; returning -Inf + Warning in max(unlist(height)) : + no non-missing arguments to max; returning -Inf + Error in gridGTreeCoords(unname(lapply(x$children[x$childrenOrder], grobCoords, : + Invalid gTree coordinates + Calls: ... lapply -> FUN -> grobCoords.gTree -> gridGTreeCoords + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.9Mb + sub-directories of 1Mb or more: + doc 2.4Mb + libs 2.6Mb + ``` + +# mcStats + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/mcStats +* Date/Publication: 2020-02-26 06:50:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "mcStats")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mcStats) + > + > test_check("mcStats") + [ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + * Removed 420 rows containing missing values or values outside the scale range + (`geom_area()`). + * Removed 442 rows containing missing values or values outside the scale range + (`geom_area()`). + * Removed 184 rows containing missing values or values outside the scale range + (`geom_area()`). + + [ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# MendelianRandomization + +
+ +* Version: 0.10.0 +* GitHub: NA +* Source code: https://github.com/cran/MendelianRandomization +* Date/Publication: 2024-04-12 10:10:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MendelianRandomization-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mr_plot + > ### Title: Draw a scatter plot of the genetic associations and/or causal + > ### estimates + > ### Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method + > ### mr_plot,MRMVInput-method + > + > ### ** Examples + > + > mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse), + + line="egger", orientate = TRUE) + Error in pm[[2]] : subscript out of bounds + Calls: mr_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 4.2Mb + ``` + +# MetAlyzer + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/nilsmechtel/MetAlyzer +* Source code: https://github.com/cran/MetAlyzer +* Date/Publication: 2024-12-06 14:00:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "MetAlyzer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MetAlyzer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotly_scatter + > ### Title: Plotly Log2FC Scatter Plot + > ### Aliases: plotly_scatter + > + > ### ** Examples + > + > + ... + Warning: Partial NA coefficients for 2 probe(s) + > + > p_scatter <- plotly_scatter(metalyzer_se) + Warning in geom_rect(data = rects_df, inherit.aes = FALSE, aes(xmin = .data$Start, : + Ignoring unknown aesthetics: text + Warning in geom_point(size = 0.5, aes(text = paste0(.data$Metabolite, "\nClass: ", : + Ignoring unknown aesthetics: text + Error in pm[[2]] : subscript out of bounds + Calls: plotly_scatter -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# MetaNet + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/Asa12138/MetaNet +* Source code: https://github.com/cran/MetaNet +* Date/Publication: 2025-04-10 06:30:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "MetaNet")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MetaNet-Ex.R’ failed + The error most likely occurred in: + + > ### Name: as.ggig + > ### Title: Transfer an igraph object to a ggig + > ### Aliases: as.ggig + > + > ### ** Examples + > + > as.ggig(co_net, coors = c_net_layout(co_net)) -> ggig + ... + 2. └─ggplot2:::print.ggplot(x) + 3. ├─ggplot2::ggplot_build(x) + 4. └─ggplot2:::ggplot_build.ggplot(x) + 5. └─npscales$set_palettes(plot$theme) + 6. └─ggplot2 (local) set_palettes(..., self = self) + 7. ├─scales::as_continuous_pal(elem) + 8. └─scales:::as_continuous_pal.default(elem) + 9. └─cli::cli_abort("Cannot convert {.arg x} to a continuous palette.") + 10. └─rlang::abort(...) + Execution halted + ``` + +# metaquant + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/metaquant +* Date/Publication: 2025-02-11 17:00:02 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "metaquant")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘metaquant-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotdist + > ### Title: Visualising Densities using Quantiles + > ### Aliases: plotdist + > + > ### ** Examples + > + > #Example dataset of 3-point summaries (min, med, max) for 2 groups + ... + + display.legend = TRUE, + + pooled.dist = TRUE + + ) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the metaquant package. + Please report the issue to the authors. + Error in pm[[2]] : subscript out of bounds + Calls: plotdist -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# MetBrewer + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/MetBrewer +* Date/Publication: 2022-03-21 13:30:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "MetBrewer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MetBrewer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: met.brewer + > ### Title: Met Palette Generator + > ### Aliases: met.brewer + > ### Keywords: colors + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# metR + +
+ +* Version: 0.18.1 +* GitHub: https://github.com/eliocamp/metR +* Source code: https://github.com/cran/metR +* Date/Publication: 2025-05-13 06:30:01 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "metR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘metR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_contour_fill + > ### Title: Filled 2d contours of a 3d surface + > ### Aliases: geom_contour_fill stat_contour_fill StatContourFill + > ### Keywords: datasets + > + > ### ** Examples + > + ... + > ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill() + geom_contour(color = "black", + + size = 0.1) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + > ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill(aes(fill = after_stat(level))) + > ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill(aes(fill = after_stat(level_d))) + Error in train(..., self = self) : + unused argument (call = scale_fill_discretised()) + Calls: ... -> train_df -> -> train -> + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(metR) + > # library(vdiffr) + > + > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) + > if (on_cran) data.table::setDTthreads(2) + > + ... + 15. ├─ggplot2::guide_gengrob(params, theme) + 16. └─metR:::guide_gengrob.colorstrip(params, theme) + 17. └─grid::convertWidth(...) + 18. └─grid::convertUnit(...) + 19. ├─grid:::upgradeUnit(x) + 20. └─grid:::upgradeUnit.default(x) + + [ FAIL 1 | WARN 2 | SKIP 19 | PASS 184 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Visualization-tools.Rmd’ using knitr + + Quitting from Visualization-tools.Rmd:181-184 [unnamed-chunk-12] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `train()`: + ! unused argument (call = scale_fill_discretised()) + --- + Backtrace: + ... + --- failed re-building ‘Visualization-tools.Rmd’ + + --- re-building ‘Working-with-data.Rmd’ using knitr + --- finished re-building ‘Working-with-data.Rmd’ + + SUMMARY: processing the following file failed: + ‘Visualization-tools.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 2.0Mb + doc 1.8Mb + ``` + +# mgcViz + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/mfasiolo/mgcViz +* Source code: https://github.com/cran/mgcViz +* Date/Publication: 2025-04-11 11:30:07 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "mgcViz")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘mgcviz.rmd’ using rmarkdown + ``` + +# MIC + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/agerada/MIC +* Source code: https://github.com/cran/MIC +* Date/Publication: 2025-02-07 09:40:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "MIC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MIC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.mic_validation + > ### Title: Plot MIC validation results + > ### Aliases: plot.mic_validation + > + > ### ** Examples + > + > gold_standard <- c("<0.25", "8", "64", ">64") + ... + 3. ├─ggplot2::ggplot_gtable(data) + 4. └─ggplot2:::ggplot_gtable.ggplot_built(data) + 5. └─layout$render(geom_grobs, data, theme, plot$labels) + 6. └─ggplot2 (local) render(..., self = self) + 7. └─self$facet$draw_panels(...) + 8. └─lemon (local) draw_panels(...) + 9. └─gtable::gtable_add_col_space(panel_table, theme$panel.spacing.x %||% theme$panel.spacing) + 10. └─cli::cli_abort("{.arg width} must be of length 1 or ncol - 1") + 11. └─rlang::abort(...) + Execution halted + ``` + +# migraph + +
+ +* Version: 1.4.5 +* GitHub: https://github.com/stocnet/migraph +* Source code: https://github.com/cran/migraph +* Date/Publication: 2024-12-02 10:00:10 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "migraph")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(manynet) + > library(migraph) + > + > test_check("migraph") + Starting 2 test processes + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 46 ] + ... + `expected` is a character vector ('Statistic') + ── Failure ('test-model_tests.R:73:3'): qap plot works ───────────────────────── + qapplot$labels$x (`actual`) not identical to "Statistic" (`expected`). + + `actual` is NULL + `expected` is a character vector ('Statistic') + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 46 ] + Error: Test failures + Execution halted + ``` + +# mikropml + +
+ +* Version: 1.6.1 +* GitHub: https://github.com/SchlossLab/mikropml +* Source code: https://github.com/cran/mikropml +* Date/Publication: 2023-08-21 15:10:05 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "mikropml")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mikropml) + > test_check("mikropml") + Fraction of data in the training set: 0.778 + Groups in the training set: A C D + Groups in the testing set: B + Fraction of data in the training set: 0.778 + ... + `names(expected)` is absent + ── Failure ('test-plot.R:140:3'): plot_mean_prc uses geom ribbon, line, and hline ── + ... %>% unlist() (`actual`) not equal to c(...) (`expected`). + + `names(actual)` is a character vector ('geom_ribbon1', 'geom_ribbon2', 'geom_ribbon3', 'geom_ribbon4', 'geom_line1', ...) + `names(expected)` is absent + + [ FAIL 2 | WARN 19 | SKIP 12 | PASS 314 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) create_grouped_data_partition.Rd:60: Lost braces; missing escapes or markup? + 60 | Zena Lapp, {zenalapp@umich.edu} + | ^ + checkRd: (-1) create_grouped_data_partition.Rd:62: Lost braces; missing escapes or markup? + 62 | Kelly Sovacool, {sovacool@umich.edu} + | ^ + checkRd: (-1) create_grouped_k_multifolds.Rd:30: Lost braces; missing escapes or markup? + 30 | Zena Lapp, {zenalapp@umich.edu} + | ^ + checkRd: (-1) get_partition_indices.Rd:58: Lost braces; missing escapes or markup? + 58 | Kelly Sovacool, {sovacool@umich.edu} + | ^ + checkRd: (-1) set_hparams_glmnet.Rd:16: Lost braces; missing escapes or markup? + 16 | Zena Lapp, {zenalapp@umich.edu} + | ^ + ``` + +# MiMIR + +
+ +* Version: 1.5 +* GitHub: NA +* Source code: https://github.com/cran/MiMIR +* Date/Publication: 2024-02-01 08:50:02 UTC +* Number of recursive dependencies: 193 + +Run `revdepcheck::cloud_details(, "MiMIR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MiMIR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: LOBOV_accuracies + > ### Title: LOBOV_accuracies + > ### Aliases: LOBOV_accuracies + > + > ### ** Examples + > + > require(pROC) + ... + 56 metabolites x 500 samples + | Pruning samples on5SD: + 56 metabolites x 500 samples + | Performing scaling ... DONE! + | Imputation ... DONE! + > p_avail<-colnames(b_p)[c(1:5)] + > LOBOV_accuracies(sur$surrogates, b_p, p_avail, MiMIR::acc_LOBOV) + Error in pm[[2]] : subscript out of bounds + Calls: LOBOV_accuracies -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# miRetrieve + +
+ +* Version: 1.3.4 +* GitHub: NA +* Source code: https://github.com/cran/miRetrieve +* Date/Publication: 2021-09-18 17:30:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "miRetrieve")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(miRetrieve) + > + > test_check("miRetrieve") + [ FAIL 1 | WARN 15 | SKIP 0 | PASS 202 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + Backtrace: + ▆ + 1. └─miRetrieve::compare_mir_terms_scatter(df_merged, "miR-21", title = "Test_title") at test-comparemirterms.R:56:1 + 2. ├─plotly::ggplotly(plot) + 3. └─plotly:::ggplotly.ggplot(plot) + 4. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 15 | SKIP 0 | PASS 202 ] + Error: Test failures + Execution halted + ``` + +# MiscMetabar + +
+ +* Version: 0.14.2 +* GitHub: https://github.com/adrientaudiere/MiscMetabar +* Source code: https://github.com/cran/MiscMetabar +* Date/Publication: 2025-03-20 15:20:02 UTC +* Number of recursive dependencies: 419 + +Run `revdepcheck::cloud_details(, "MiscMetabar")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(MiscMetabar) + Loading required package: phyloseq + Loading required package: ggplot2 + Loading required package: dada2 + Loading required package: Rcpp + ... + 'test_tuckey.R:26:3', 'test_targets.R:5:3', 'test_targets.R:56:3', + 'test_targets.R:84:3', 'test_targets.R:101:3', 'test_targets.R:111:3' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ─────────────── + `graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings. + + [ FAIL 1 | WARN 4 | SKIP 74 | PASS 81 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + data 2.0Mb + extdata 1.2Mb + ``` + +# misspi + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/misspi +* Date/Publication: 2023-10-17 09:50:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "misspi")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘misspi-Ex.R’ failed + The error most likely occurred in: + + > ### Name: evaliq + > ### Title: Evaluate the Imputation Quality + > ### Aliases: evaliq + > + > ### ** Examples + > + > # A very quick example + ... + > # Default plot + > er.eval <- evaliq(x.true[na.idx], x.est[na.idx]) + `geom_smooth()` using formula = 'y ~ x' + > + > # Interactive plot + > er.eval <- evaliq(x.true[na.idx], x.est[na.idx], interactive = TRUE) + `geom_smooth()` using formula = 'y ~ x' + Error in pm[[2]] : subscript out of bounds + Calls: evaliq -> print -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# misty + +
+ +* Version: 0.7.1 +* GitHub: NA +* Source code: https://github.com/cran/misty +* Date/Publication: 2025-03-10 17:40:07 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "misty")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘misty-Ex.R’ failed + The error most likely occurred in: + + > ### Name: na.pattern + > ### Title: Missing Data Pattern + > ### Aliases: na.pattern + > + > ### ** Examples + > + > # Example 1: Compute a summary of missing data patterns + ... + 23. └─ggplot2 (local) extract_key(...) + 24. └─Guide$extract_key(scale, aesthetic, ...) + 25. └─ggplot2 (local) extract_key(...) + 26. └─scale$get_labels(breaks) + 27. └─ggplot2 (local) get_labels(..., self = self) + 28. └─self$scale$get_labels(breaks) + 29. └─ggplot2 (local) get_labels(..., self = self) + 30. └─cli::cli_abort(...) + 31. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + R 4.0Mb + help 1.5Mb + ``` + +# mizer + +
+ +* Version: 2.5.3 +* GitHub: https://github.com/sizespectrum/mizer +* Source code: https://github.com/cran/mizer +* Date/Publication: 2024-10-17 07:10:09 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "mizer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + • plots/plot-feeding-level.svg + • plots/plot-single-growth-curve.svg + • plots/plot-spectra.svg + • plots/plot-yield-by-gear.svg + • plots/plot-yield.svg + • plots/plotfishing-mortality.svg + • plots/plotfmort-truncated.svg + • plots/plotpredation-mortality.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.5Mb + sub-directories of 1Mb or more: + help 1.8Mb + ``` + +# MKpower + +
+ +* Version: 1.0 +* GitHub: https://github.com/stamats/MKpower +* Source code: https://github.com/cran/MKpower +* Date/Publication: 2024-09-23 14:30:01 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "MKpower")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MKpower-Ex.R’ failed + The error most likely occurred in: + + > ### Name: qqunif + > ### Title: qq-Plots for Uniform Distribution + > ### Aliases: qqunif qqunif.default qqunif.sim.power.ttest + > ### qqunif.sim.power.wtest + > ### Keywords: hplot + > + > ### ** Examples + ... + 23. │ └─ggplot2 (local) FUN(X[[i]], ...) + 24. │ └─self$draw_group(group, panel_params, coord, ...) + 25. │ └─ggplot2 (local) draw_group(...) + 26. │ └─ggplot2 (local) draw_group(..., self = self) + 27. └─base::.handleSimpleError(...) + 28. └─rlang (local) h(simpleError(msg, call)) + 29. └─handlers[[1L]](cnd) + 30. └─cli::cli_abort(...) + 31. └─rlang::abort(...) + Execution halted + ``` + +# modeltime.resample + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/business-science/modeltime.resample +* Source code: https://github.com/cran/modeltime.resample +* Date/Publication: 2023-04-12 15:50:02 UTC +* Number of recursive dependencies: 235 + +Run `revdepcheck::cloud_details(, "modeltime.resample")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > # Machine Learning + > library(tidymodels) + ── Attaching packages ────────────────────────────────────── tidymodels 1.3.0 ── + ✔ broom 1.0.8 ✔ recipes 1.3.0 + ✔ dials 1.4.0 ✔ rsample 1.3.0 + ... + ▆ + 1. ├─m750_models_resample %>% ... at test-modeltime_fit_resamples.R:116:5 + 2. └─modeltime.resample::plot_modeltime_resamples(., .interactive = TRUE) + 3. ├─plotly::ggplotly(g) + 4. └─plotly:::ggplotly.ggplot(g) + 5. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 4 | SKIP 0 | PASS 16 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘crayon’ ‘dials’ ‘glue’ ‘parsnip’ + All declared Imports should be used. + ``` + +# modgo + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/modgo +* Date/Publication: 2024-09-11 16:20:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "modgo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘modgo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: distr_plots + > ### Title: Plots distribution of original and simulated data + > ### Aliases: distr_plots + > + > ### ** Examples + > + > data("Cleveland",package="modgo") + ... + 26. └─vctrs (local) ``() + 27. └─vctrs::vec_default_ptype2(...) + 28. ├─base::withRestarts(...) + 29. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 30. │ └─base (local) doWithOneRestart(return(expr), restart) + 31. └─vctrs::stop_incompatible_type(...) + 32. └─vctrs:::stop_incompatible(...) + 33. └─vctrs:::stop_vctrs(...) + 34. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘modgo_vignette.Rmd’ using rmarkdown + ``` + +# mpactr + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/mums2/mpactr +* Source code: https://github.com/cran/mpactr +* Date/Publication: 2025-03-29 00:30:05 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "mpactr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘downstream_analyses.Rmd’ using rmarkdown + Warning: Duplicated chunk option(s) 'warning' in both chunk header and pipe comments of the chunk 'unnamed-chunk-18'. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.0Mb + sub-directories of 1Mb or more: + doc 4.9Mb + extdata 1.9Mb + libs 1.6Mb + ``` + +# MPTmultiverse + +
+ +* Version: 0.4-2 +* GitHub: https://github.com/mpt-network/MPTmultiverse +* Source code: https://github.com/cran/MPTmultiverse +* Date/Publication: 2020-06-24 09:40:11 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "MPTmultiverse")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MPTmultiverse-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fit_mpt + > ### Title: Multiverse Analysis for MPT Models + > ### Aliases: fit_mpt + > + > ### ** Examples + > + > + ... + Backtrace: + ▆ + 1. ├─base::plot(fit_all, which = "est") + 2. └─MPTmultiverse:::plot.multiverseMPT(fit_all, which = "est") + 3. └─MPTmultiverse:::plot_est(x, shapes = shapes) + 4. └─ggplot2::facet_grid(facets = ". ~ condition") + 5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 6. └─lifecycle:::deprecate_stop0(msg) + 7. └─rlang::cnd_signal(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction-bayen_kuhlmann_2011.rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fit_mpt.Rd:139-142: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:143-148: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:149-159: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:167-168: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:169: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:170: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:171: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:176-177: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:178-179: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:180-181: Lost braces in \itemize; meant \describe ? + ... + checkRd: (-1) mpt_options.Rd:18: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:19: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:20: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:27: Lost braces in \itemize; meant \describe ? + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# MRZero + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/MRZero +* Date/Publication: 2024-04-14 09:30:03 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "MRZero")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MRZero-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mr_plot + > ### Title: Draw a scatter plot of the genetic associations and/or causal + > ### estimates + > ### Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method + > ### mr_plot,MRMVInput-method + > + > ### ** Examples + > + > mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse), + + line="egger", orientate = TRUE) + Error in pm[[2]] : subscript out of bounds + Calls: mr_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# mstate + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/hputter/mstate +* Source code: https://github.com/cran/mstate +* Date/Publication: 2024-07-11 21:30:06 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "mstate")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mstate-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vis.multiple.pt + > ### Title: Visualise multiple probtrans objects + > ### Aliases: vis.multiple.pt + > + > ### ** Examples + > + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘visuals_demo.Rmd’ using rmarkdown + ``` + +# MultiTraits + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/MultiTraits +* Date/Publication: 2025-04-20 18:40:02 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "MultiTraits")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MultiTraits-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CSR_plot + > ### Title: Create a ternary plot of CSR strategies + > ### Aliases: CSR_plot + > + > ### ** Examples + > + > data(PFF) + ... + 5 51 14 31 4.068212 0.000000 95.93179 R + 6 66 27 13 5.131786 73.958953 20.90926 S/SR + > CSR_plot(data=result) + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the ggtern package. + Please report the issue to the authors. + Error in validate_theme(theme) : could not find function "validate_theme" + Calls: ... ggplot_build.ggplot -> layers_add_or_remove_mask -> + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘MultiTraits_tutorial.Rmd’ using rmarkdown + + Quitting from MultiTraits_tutorial.Rmd:105-120 [unnamed-chunk-4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `validate_theme()`: + ! could not find function "validate_theme" + --- + Backtrace: + ... + + Error: processing vignette 'MultiTraits_tutorial.Rmd' failed with diagnostics: + could not find function "validate_theme" + --- failed re-building ‘MultiTraits_tutorial.Rmd’ + + SUMMARY: processing the following file failed: + ‘MultiTraits_tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking whether package ‘MultiTraits’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/00install.out’ for details. + ``` + +# mvdalab + +
+ +* Version: 1.7 +* GitHub: NA +* Source code: https://github.com/cran/mvdalab +* Date/Publication: 2022-10-05 23:00:14 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "mvdalab")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mvdalab-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.plusminus + > ### Title: 2D Graph of the PCA scores associated with a plusminusFit + > ### Aliases: plot.plusminus + > + > ### ** Examples + > + > ### PLUS-Minus CLASSIFIER WITH validation = 'none', i.e. no CV ### + ... + 12. │ └─ggplot2 (local) FUN(X[[i]], ...) + 13. │ └─scale$map_df(df = df) + 14. │ └─ggplot2 (local) map_df(..., self = self) + 15. │ └─base::lapply(aesthetics, function(j) self$map(df[[j]])) + 16. │ └─ggplot2 (local) FUN(X[[i]], ...) + 17. │ └─self$map(df[[j]]) + 18. │ └─ggplot2 (local) map(..., self = self) + 19. │ └─vctrs::`vec_slice<-`(`*tmp*`, is.na(x), value = na_value) + 20. └─rlang::cnd_signal(x) + Execution halted + ``` + +# NatParksPalettes + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/kevinsblake/NatParksPalettes +* Source code: https://github.com/cran/NatParksPalettes +* Date/Publication: 2022-10-09 21:10:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "NatParksPalettes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NatParksPalettes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: natparks.pals + > ### Title: National Parks Palette Generator + > ### Aliases: natparks.pals + > ### Keywords: colors + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# neatmaps + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/PhilBoileau/neatmaps +* Source code: https://github.com/cran/neatmaps +* Date/Publication: 2019-05-12 19:10:03 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "neatmaps")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘neatmaps-Ex.R’ failed + The error most likely occurred in: + + > ### Name: consClustResTable + > ### Title: Consensus Cluster Results in a Table + > ### Aliases: consClustResTable + > + > ### ** Examples + > + > # create the data frame using the network, node and edge attributes + ... + > # run the neatmap code on df + > neat_res <- neatmap(df, scale_df = "ecdf", max_k = 3, reps = 100, + + xlab = "vars", ylab = "nets", xlab_cex = 1, ylab_cex = 1) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the dendextend package. + Please report the issue at . + Error in pm[[2]] : subscript out of bounds + Calls: neatmap ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.3Mb + ``` + +# NHSRplotthedots + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/NHSRplotthedots +* Date/Publication: 2021-11-03 20:20:10 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "NHSRplotthedots")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(NHSRplotthedots) + > + > test_check("NHSRplotthedots") + [ FAIL 1 | WARN 733 | SKIP 3 | PASS 431 ] + + ... + + `actual$type` is absent + `expected$type` is a character vector ('type') + + `actual$text` is absent + `expected$text` is a character vector ('text') + + [ FAIL 1 | WARN 733 | SKIP 3 | PASS 431 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘NHSRdatasets’ ‘grid’ ‘utils’ + All declared Imports should be used. + ``` + +# nic + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/thiyangt/nic +* Source code: https://github.com/cran/nic +* Date/Publication: 2023-03-13 11:30:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "nic")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘color-palette-demo.Rmd’ using rmarkdown + ``` + +# NIMAA + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/jafarilab/NIMAA +* Source code: https://github.com/cran/NIMAA +* Date/Publication: 2022-04-11 14:12:45 UTC +* Number of recursive dependencies: 180 + +Run `revdepcheck::cloud_details(, "NIMAA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NIMAA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: extractSubMatrix + > ### Title: Extract the non-missing submatrices from a given matrix. + > ### Aliases: extractSubMatrix + > + > ### ** Examples + > + > # load part of the beatAML data + ... + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the NIMAA package. + Please report the issue at . + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the NIMAA package. + Please report the issue at . + Error in pm[[2]] : subscript out of bounds + Calls: extractSubMatrix ... plotSubmatrix -> print -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(NIMAA) + > + > test_check("NIMAA") + binmatnest.temperature + 13.21232 + Size of Square: 66 rows x 66 columns + ... + 1. └─NIMAA::extractSubMatrix(...) at test-extract-nonmissing-submatrix.R:5:3 + 2. └─NIMAA:::plotSubmatrix(...) + 3. ├─base::print(plotly::ggplotly(p)) + 4. ├─plotly::ggplotly(p) + 5. └─plotly:::ggplotly.ggplot(p) + 6. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 8 | SKIP 0 | PASS 7 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘NIMAA-vignette.Rmd’ using rmarkdown + + Quitting from NIMAA-vignette.Rmd:48-57 [plotIncMatrix function] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'NIMAA-vignette.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘NIMAA-vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘NIMAA-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 4.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 24 marked UTF-8 strings + ``` + +# nlmixr2plot + +
+ +* Version: 3.0.1 +* GitHub: https://github.com/nlmixr2/nlmixr2plot +* Source code: https://github.com/cran/nlmixr2plot +* Date/Publication: 2025-02-14 15:10:02 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "nlmixr2plot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(nlmixr2plot) + > + > test_check("nlmixr2plot") + > loading into symengine environment... + > pruning branches (`if`/`else`) of saem model... + v done + ... + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ + • On CRAN (2): 'test-plots-cens.R:2:3', 'test-plots-multiple-endpoints.R:2:3' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test-add.R:41:3'): test addition operator ─────────────────────────── + Error in `pl + ggplot2::xlab("cool")`: non-numeric argument to binary operator + + [ FAIL 1 | WARN 5 | SKIP 2 | PASS 30 ] + Error: Test failures + Execution halted + ``` + +# nonmem2R + +
+ +* Version: 0.2.5 +* GitHub: NA +* Source code: https://github.com/cran/nonmem2R +* Date/Publication: 2024-03-11 17:30:02 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "nonmem2R")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘nonmem2R-Ex.R’ failed + The error most likely occurred in: + + > ### Name: basic.GOF4 + > ### Title: Basic 4- and 6-panel GOF + > ### Aliases: basic.GOF4 basic.GOF6 + > + > ### ** Examples + > + > # Get path to the example files included in nonmem2R package + ... + 21. │ └─l$compute_position(d, layout) + 22. │ └─ggplot2 (local) compute_position(..., self = self) + 23. │ └─self$position$setup_data(data, params) + 24. │ └─ggplot2 (local) setup_data(..., self = self) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘GOFvignette.Rmd’ using rmarkdown + ``` + +# normfluodbf + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/AlphaPrime7/normfluodbf +* Source code: https://github.com/cran/normfluodbf +* Date/Publication: 2024-09-27 23:10:03 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "normfluodbf")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ▆ + 1. ├─... %>% ... at test_plot_dev.R:13:3 + 2. └─normfluodbf:::plot_dev_with_custom_legends(...) + 3. ├─plotly::ggplotly(p) + 4. └─plotly:::ggplotly.ggplot(p) + 5. └─plotly::gg2list(...) + + [ FAIL 4 | WARN 613 | SKIP 0 | PASS 15 ] + Error: Test failures + Execution halted + ``` + +# nprobust + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/nprobust +* Date/Publication: 2025-04-14 07:50:06 UTC +* Number of recursive dependencies: 28 + +Run `revdepcheck::cloud_details(, "nprobust")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘nprobust-Ex.R’ failed + The error most likely occurred in: + + > ### Name: nprobust.plot + > ### Title: Graphical Presentation of Results from 'nprobust' Package. + > ### Aliases: nprobust.plot + > + > ### ** Examples + > + > x <- runif(500) + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# nuts + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/ropensci/nuts +* Source code: https://github.com/cran/nuts +* Date/Publication: 2024-07-13 10:50:02 UTC +* Number of recursive dependencies: 167 + +Run `revdepcheck::cloud_details(, "nuts")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘nuts.Rmd’ using knitr + ``` + +# nzelect + +
+ +* Version: 0.4.0 +* GitHub: NA +* Source code: https://github.com/cran/nzelect +* Date/Publication: 2017-10-02 20:35:23 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "nzelect")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘README.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + data 5.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6409 marked UTF-8 strings + ``` + +# ofpetrial + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/DIFM-Brain/ofpetrial +* Source code: https://github.com/cran/ofpetrial +* Date/Publication: 2024-12-11 23:00:02 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "ofpetrial")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ofpetrial-Ex.R’ failed + The error most likely occurred in: + + > ### Name: check_ortho_with_chars + > ### Title: Check the orthogonality with field/topographic characteristics + > ### Aliases: check_ortho_with_chars + > + > ### ** Examples + > + > data(td_single_input) + ... + 30. └─plt$build() + 31. └─private$addLimits(margThemed) + 32. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish) + 33. └─ggplot2::continuous_scale(...) + 34. └─ggplot2:::check_continuous_limits(limits, call = call) + 35. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE) + 36. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) + 37. └─ggplot2:::stop_input_type(...) + 38. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +# OmicNavigator + +
+ +* Version: 1.13.13 +* GitHub: https://github.com/abbvie-external/OmicNavigator +* Source code: https://github.com/cran/OmicNavigator +* Date/Publication: 2023-08-25 20:40:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "OmicNavigator")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > # Test files in inst/tinytest/ + > if (requireNamespace("tinytest", quietly = TRUE)) { + + suppressMessages(tinytest::test_package("OmicNavigator")) + + } + + testAdd.R..................... 0 tests + testAdd.R..................... 0 tests + ... + testPlot.R.................... 140 tests 1 fails + testPlot.R.................... 140 tests 1 fails + testPlot.R.................... 141 tests 1 fails + testPlot.R.................... 141 tests 1 fails + testPlot.R.................... 141 tests 1 fails + testPlot.R.................... 142 tests 1 fails + testPlot.R.................... 142 tests 1 fails + testPlot.R.................... 143 tests 1 fails Error in pm[[2]] : subscript out of bounds + Calls: suppressMessages ... plotStudy -> f -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘OmicNavigatorAPI.Rnw’ using Sweave + OmicNavigator R package version: 1.13.13 + The app is not installed. Install it with installApp() + Installing study "ABC" in /tmp/RtmpZZJnkc/file1cc0178f2c1 + Exporting study "ABC" as an R package + Note: No maintainer email was specified. Using the placeholder: Unknown + Calculating pairwise overlaps. This may take a while... + Exported study to /tmp/RtmpZZJnkc/ONstudyABC + Success! + ... + l.14 ^^M + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘OmicNavigatorUsersGuide.Rnw’ + + SUMMARY: processing the following files failed: + ‘OmicNavigatorAPI.Rnw’ ‘OmicNavigatorUsersGuide.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# onewaytests + +
+ +* Version: 3.0 +* GitHub: NA +* Source code: https://github.com/cran/onewaytests +* Date/Publication: 2023-10-01 22:00:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "onewaytests")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘onewaytests-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gplot + > ### Title: Box-and-Whisker, Violin Plots and Error Bars + > ### Aliases: gplot + > ### Keywords: functions + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# ordinalsimr + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/NeuroShepherd/ordinalsimr +* Source code: https://github.com/cran/ordinalsimr +* Date/Publication: 2025-03-07 10:10:02 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "ordinalsimr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Error ('test-utils.R:70:3'): test the plot_power() function ───────────────── + Error in `expect_match(plot_obj$labels$ymin, "lower_power_bound")`: is.character(act$val) is not TRUE + Backtrace: + ▆ + 1. └─testthat::expect_match(plot_obj$labels$ymin, "lower_power_bound") at test-utils.R:70:3 + 2. └─base::stopifnot(is.character(act$val)) + + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 69 ] + Error: Test failures + Execution halted + ``` + +# OTclust + +
+ +* Version: 1.0.6 +* GitHub: NA +* Source code: https://github.com/cran/OTclust +* Date/Publication: 2023-10-06 14:40:07 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "OTclust")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘OTclust-Ex.R’ failed + The error most likely occurred in: + + > ### Name: otplot + > ### Title: Visualize a partition on 2 dimensional space + > ### Aliases: otplot + > + > ### ** Examples + > + > data(sim1) + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘OTclust.Rmd’ using rmarkdown + + Quitting from OTclust.Rmd:86-91 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'OTclust.Rmd' failed with diagnostics: + Can't combine `..1` and `..2` . + --- failed re-building ‘OTclust.Rmd’ + + SUMMARY: processing the following file failed: + ‘OTclust.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# pafr + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/dwinter/pafr +* Source code: https://github.com/cran/pafr +* Date/Publication: 2020-12-08 10:20:12 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "pafr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pafr) + Loading required package: ggplot2 + > + > test_check("pafr") + [ FAIL 6 | WARN 2 | SKIP 0 | PASS 70 ] + + ... + ── Failure ('test_plot.r:11:5'): dotplot works produces a plot ───────────────── + unname(labs["xintercept"]) not equal to "xintercept". + target is NULL, current is character + ── Failure ('test_plot.r:12:5'): dotplot works produces a plot ───────────────── + unname(labs["yintercept"]) not equal to "yintercept". + target is NULL, current is character + + [ FAIL 6 | WARN 2 | SKIP 0 | PASS 70 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# paletteer + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/EmilHvitfeldt/paletteer +* Source code: https://github.com/cran/paletteer +* Date/Publication: 2024-01-21 18:00:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "paletteer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(paletteer) + > + > test_check("paletteer") + NULL + NULL + NULL + ... + • vdiffr_palette_check/vangogh.svg + • vdiffr_palette_check/vapeplot.svg + • vdiffr_palette_check/vaporwave.svg + • vdiffr_palette_check/viridis.svg + • vdiffr_palette_check/warhol.svg + • vdiffr_palette_check/werpals.svg + • vdiffr_palette_check/wesanderson.svg + • vdiffr_palette_check/yarrr.svg + Error: Test failures + Execution halted + ``` + +# palettes + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/mccarthy-m-g/palettes +* Source code: https://github.com/cran/palettes +* Date/Publication: 2024-07-13 23:10:01 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "palettes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘palettes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scale_colour_palette_d + > ### Title: Colour scales from colour vectors and colour palettes + > ### Aliases: scale_colour_palette_d scale_fill_palette_d + > ### scale_colour_palette_c scale_fill_palette_c scale_colour_palette_b + > ### scale_fill_palette_b scale_color_palette_d scale_color_palette_c + > ### scale_color_palette_b + > + ... + 23. └─vctrs::vec_default_cast(...) + 24. ├─base::withRestarts(...) + 25. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 26. │ └─base (local) doWithOneRestart(return(expr), restart) + 27. └─vctrs::stop_incompatible_cast(...) + 28. └─vctrs::stop_incompatible_type(...) + 29. └─vctrs:::stop_incompatible(...) + 30. └─vctrs:::stop_vctrs(...) + 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘biscale.Rmd’ using rmarkdown + ``` + +# PAMscapes + +
+ +* Version: 0.11.3 +* GitHub: NA +* Source code: https://github.com/cran/PAMscapes +* Date/Publication: 2025-04-02 20:30:05 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "PAMscapes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PAMscapes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: markNA + > ### Title: Mark NA Values by Time and Frequency + > ### Aliases: markNA + > + > ### ** Examples + > + > manta <- loadSoundscapeData(system.file('extdata/MANTAExampleSmall1.csv', package='PAMscapes')) + ... + Found 1 non-standard hybrid millidecade frequencies (HMD_24000) these will be removed. Run with "dropNonHmd=FALSE" to keep them. + > naDf <- data.frame(start=min(manta$UTC), + + end=max(manta$UTC), + + freqMin=100, + + freqMax=500) + > plotHourlyLevel(manta) + Warning in scale_x_continuous(trans = "log10", breaks = major, minor_breaks = minor, : + log-10 transformation introduced infinite values. + Error: Cannot create zero-length unit vector ("unit" subsetting) + Execution halted + ``` + +# pathfindR + +
+ +* Version: 2.4.2 +* GitHub: https://github.com/egeulgen/pathfindR +* Source code: https://github.com/cran/pathfindR +* Date/Publication: 2025-02-17 09:30:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "pathfindR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat-active_snw.R’ + Running ‘testthat-clustering.R’ + Running ‘testthat-comparison.R’ + Running ‘testthat-core.R’ + Running ‘testthat-data_generation.R’ + Running ‘testthat-enrichment.R’ + Running ‘testthat-scoring.R’ + Running the tests in ‘tests/testthat-scoring.R’ failed. + Complete output: + > library(testthat) + ... + ── Failure ('test-scoring.R:113:9'): `plot_scores()` -- creates term score heatmap ggplot object with correct labels ── + g$labels$x not identical to "Sample". + target is NULL, current is character + ── Failure ('test-scoring.R:114:9'): `plot_scores()` -- creates term score heatmap ggplot object with correct labels ── + g$labels$y not identical to "Term". + target is NULL, current is character + + [ FAIL 8 | WARN 0 | SKIP 0 | PASS 37 ] + Error: Test failures + Execution halted + ``` + +# pathviewr + +
+ +* Version: 1.1.7 +* GitHub: https://github.com/ropensci/pathviewr +* Source code: https://github.com/cran/pathviewr +* Date/Publication: 2023-03-08 08:10:05 UTC +* Number of recursive dependencies: 189 + +Run `revdepcheck::cloud_details(, "pathviewr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pathviewr) + > #library(vdiffr) + > + > test_check("pathviewr") + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ] + + ... + ── Error ('test-plot_by_subject.R:168:3'): elev views wrangled correctly via tidyverse ── + Error in `expect_match(elev_all_plots[[3]][[4]][["labels"]][["x"]], "position_height")`: is.character(act$val) is not TRUE + Backtrace: + ▆ + 1. └─testthat::expect_match(...) at test-plot_by_subject.R:168:3 + 2. └─base::stopifnot(is.character(act$val)) + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ] + Error: Test failures + Execution halted + ``` + +# pdxTrees + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/mcconvil/pdxTrees +* Source code: https://github.com/cran/pdxTrees +* Date/Publication: 2020-08-17 14:00:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "pdxTrees")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘pdxTrees-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# personalized + +
+ +* Version: 0.2.7 +* GitHub: https://github.com/jaredhuling/personalized +* Source code: https://github.com/cran/personalized +* Date/Publication: 2022-06-27 20:20:03 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "personalized")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > Sys.setenv("R_TESTS" = "") + > library(testthat) + > library(personalized) + Loading required package: glmnet + Loading required package: Matrix + Loaded glmnet 4.1-8 + Loading required package: mgcv + ... + 4. └─personalized:::plot.subgroup_validated(subgrp.val, type = "stability") + 5. ├─plotly::subplot(...) + 6. │ └─plotly:::dots2plots(...) + 7. ├─plotly::ggplotly(p.primary, tooltip = paste0("tooltip", 1:4)) + 8. └─plotly:::ggplotly.ggplot(...) + 9. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 215 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fit.subgroup.Rd:56: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:57: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:58: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:59: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:60: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:61: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:62: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:63: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:64: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:65: Lost braces in \itemize; meant \describe ? + ... + checkRd: (-1) fit.subgroup.Rd:179-181: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:182: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:183: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:184: Lost braces in \itemize; meant \describe ? + checkRd: (-1) validate.subgroup.Rd:77-81: Lost braces in \enumerate; meant \describe ? + checkRd: (-1) validate.subgroup.Rd:82-86: Lost braces in \enumerate; meant \describe ? + checkRd: (-1) validate.subgroup.Rd:89-92: Lost braces in \enumerate; meant \describe ? + checkRd: (-1) weighted.ksvm.Rd:21: Lost braces; missing escapes or markup? + 21 | \item{y}{The response vector (either a character vector, factor vector, or numeric vector with values in {-1, 1})} + | ^ + ``` + +# PieGlyph + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/rishvish/PieGlyph +* Source code: https://github.com/cran/PieGlyph +* Date/Publication: 2024-06-28 12:00:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "PieGlyph")` for more info + +
+ +## Newly broken + +* checking whether package ‘PieGlyph’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘PieGlyph’ +Execution halted +ERROR: lazy loading failed for package ‘PieGlyph’ +* removing ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/PieGlyph’ + + +``` +### CRAN + +``` +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (PieGlyph) + + +``` +# plantTracker + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/aestears/plantTracker +* Source code: https://github.com/cran/plantTracker +* Date/Publication: 2023-05-05 18:20:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "plantTracker")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Suggested_plantTracker_Workflow.Rmd’ using rmarkdown + Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : + number of items to replace is not a multiple of replacement length + ``` + +# Plasmidprofiler + +
+ +* Version: 0.1.6 +* GitHub: NA +* Source code: https://github.com/cran/Plasmidprofiler +* Date/Publication: 2017-01-06 01:10:47 +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "Plasmidprofiler")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Plasmidprofiler-Ex.R’ failed + The error most likely occurred in: + + > ### Name: main + > ### Title: Main: Run everything + > ### Aliases: main + > + > ### ** Examples + > + > main(blastdata, + ... + Saving 12 x 7 in image + Warning: Vectorized input to `element_text()` is not officially supported. + ℹ Results may be unexpected or may change in future versions of ggplot2. + Warning in geom_tile(aes(x = Plasmid, y = Sample, label = AMR_gene, fill = Inc_group, : + Ignoring unknown aesthetics: label and text + Warning: Use of `report$Sureness` is discouraged. + ℹ Use `Sureness` instead. + Error in pm[[2]] : subscript out of bounds + Calls: main ... -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# plotDK + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/plotDK +* Date/Publication: 2021-10-01 08:00:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "plotDK")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(plotDK) + > + > test_check("plotDK") + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 46 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + Error in `expect_setequal(c("x", "y", "group", "subgroup", "text", "fill"), + names(labels))`: `object` and `expected` must both be vectors + Backtrace: + ▆ + 1. └─testthat::expect_setequal(c("x", "y", "group", "subgroup", "text", "fill"), names(labels)) at test-plotDK.R:67:5 + 2. └─rlang::abort("`object` and `expected` must both be vectors") + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 46 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘mapproj’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 12992 marked UTF-8 strings + ``` + +# plothelper + +
+ +* Version: 0.1.9 +* GitHub: https://github.com/githubwwwjjj/plothelper +* Source code: https://github.com/cran/plothelper +* Date/Publication: 2020-05-08 08:40:10 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "plothelper")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plothelper-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sunshinexy + > ### Title: Generating Lines Which Link One Points to Many + > ### Aliases: sunshinexy + > + > ### ** Examples + > + > library(ggplot2) + ... + + scale_color_continuous(low="blue", high="red") + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_color_continuous(low = "blue", high = "red") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# plotly + +
+ +* Version: 4.10.4 +* GitHub: https://github.com/plotly/plotly.R +* Source code: https://github.com/cran/plotly +* Date/Publication: 2024-01-13 22:40:02 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "plotly")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plotly-Ex.R’ failed + The error most likely occurred in: + + > ### Name: style + > ### Title: Modify trace(s) + > ### Aliases: style + > + > ### ** Examples + > + > ## Don't show: + ... + + # this clobbers the previously supplied marker.line.color + + style(p, marker.line = list(width = 2.5), marker.size = 10) + + ## Don't show: + + }) # examplesIf + > (p <- ggplotly(qplot(data = mtcars, wt, mpg, geom = c("point", "smooth")))) + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + `geom_smooth()` using method = 'loess' and formula = 'y ~ x' + Error in pm[[2]] : subscript out of bounds + Calls: ... eval -> eval -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("plotly") + Loading required package: ggplot2 + + Attaching package: 'plotly' + + The following object is masked from 'package:ggplot2': + ... + • plotly-subplot/subplot-bump-axis-annotation.svg + • plotly-subplot/subplot-bump-axis-image.svg + • plotly-subplot/subplot-bump-axis-shape-shared.svg + • plotly-subplot/subplot-bump-axis-shape.svg + • plotly-subplot/subplot-reposition-annotation.svg + • plotly-subplot/subplot-reposition-image.svg + • plotly-subplot/subplot-reposition-shape-fixed.svg + • plotly-subplot/subplot-reposition-shape.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.1Mb + sub-directories of 1Mb or more: + R 1.0Mb + htmlwidgets 4.0Mb + ``` + +# plotor + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/craig-parylo/plotor +* Source code: https://github.com/cran/plotor +* Date/Publication: 2025-02-09 11:50:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "plotor")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + > test_check("plotor") + [ FAIL 1 | WARN 20 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot_or.R:3:3'): plotor output does not produce messages or warnings ── + `{ ... }` produced warnings. + + [ FAIL 1 | WARN 20 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# plotROC + +
+ +* Version: 2.3.1 +* GitHub: https://github.com/sachsmc/plotROC +* Source code: https://github.com/cran/plotROC +* Date/Publication: 2023-10-06 12:40:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "plotROC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plotROC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: calc_auc + > ### Title: Calculate the Area under the ROC curve + > ### Aliases: calc_auc + > + > ### ** Examples + > + > D.ex <- rbinom(50, 1, .5) + ... + > ggroc <- ggplot(rocdata, aes(m = M, d = D)) + geom_roc() + > calc_auc(ggroc) + Error in `rlang::quo_get_expr()`: + ! `quo` must be a quosure + Backtrace: + ▆ + 1. ├─plotROC::calc_auc(ggroc) + 2. │ └─rlang::quo_get_expr(l2$plot$mapping[current_name][[1]]) + 3. └─rlang::abort(message = message) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(plotROC) + Loading required package: ggplot2 + > + > test_check("plotROC") + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ] + + ... + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─base::nrow(calc_auc(ggroc_p)) + 5. ├─plotROC::calc_auc(ggroc_p) + 6. │ └─rlang::quo_get_expr(l2$plot$mapping[current_name][[1]]) + 7. └─rlang::abort(message = message) + + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘examples.Rmd’ using rmarkdown + ``` + +# plotthis + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/pwwang/plotthis +* Source code: https://github.com/cran/plotthis +* Date/Publication: 2025-04-07 09:00:02 UTC +* Number of recursive dependencies: 212 + +Run `revdepcheck::cloud_details(, "plotthis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plotthis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: QQPlot + > ### Title: QQ plot + > ### Aliases: QQPlot + > + > ### ** Examples + > + > set.seed(8525) + ... + 23. │ └─ggplot2 (local) FUN(X[[i]], ...) + 24. │ └─self$draw_group(group, panel_params, coord, ...) + 25. │ └─ggplot2 (local) draw_group(...) + 26. │ └─ggplot2 (local) draw_group(..., self = self) + 27. └─base::.handleSimpleError(...) + 28. └─rlang (local) h(simpleError(msg, call)) + 29. └─handlers[[1L]](cnd) + 30. └─cli::cli_abort(...) + 31. └─rlang::abort(...) + Execution halted + ``` + +# pmartR + +
+ +* Version: 2.5.0 +* GitHub: https://github.com/pmartR/pmartR +* Source code: https://github.com/cran/pmartR +* Date/Publication: 2025-04-23 18:00:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "pmartR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pmartR) + > + > test_check("pmartR") + [ FAIL 1 | WARN 11 | SKIP 11 | PASS 2380 ] + + ══ Skipped tests (11) ══════════════════════════════════════════════════════════ + ... + • plots/plot-spansres-n-biomolecule-bar.svg + • plots/plot-spansres.svg + • plots/plot-statres-anova-volcano.svg + • plots/plot-statres-anova.svg + • plots/plot-statres-combined-volcano.svg + • plots/plot-statres-combined.svg + • plots/plot-statres-gtest.svg + • plots/plot-totalcountfilt.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.7Mb + sub-directories of 1Mb or more: + R 1.5Mb + help 1.5Mb + libs 6.6Mb + ``` + +# pmxTools + +
+ +* Version: 1.3 +* GitHub: https://github.com/kestrel99/pmxTools +* Source code: https://github.com/cran/pmxTools +* Date/Publication: 2023-02-21 16:00:08 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "pmxTools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pmxTools) + Loading required package: patchwork + > + > test_check("pmxTools") + [ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ] + + ... + 41. └─handlers[[1L]](cnd) + 42. └─cli::cli_abort(...) + 43. └─rlang::abort(...) + + [ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ] + Deleting unused snapshots: + • plot/conditioned-distplot.svg + • plot/perc.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) plot_scm.Rd:106: Lost braces; missing escapes or markup? + 106 | \item{lookupDF}{A data frame containing a lookup table for node labels. By default, {plot_scm} will use the PSN model names. If a lookup table containing the fields `Model` and `Alias` is provided, model names in `Model` will be replaced in the output plots by mtaching labels in `Alias`.} + | ^ + checkRd: (-1) rnm.Rd:56: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:57: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:58: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:59: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:60: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:61: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:62: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:63: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:64: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:65: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:66: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:67: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:68: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:69: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:70: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:71: Lost braces in \itemize; meant \describe ? + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘DiagrammeR’ + ``` + +# PoweREST + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/PoweREST +* Date/Publication: 2024-09-09 09:30:02 UTC +* Number of recursive dependencies: 181 + +Run `revdepcheck::cloud_details(, "PoweREST")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PoweREST-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vis_XGBoost + > ### Title: Visualization of the power estimations from XGBoost + > ### Aliases: vis_XGBoost + > + > ### ** Examples + > + > data(power_example) + ... + # Good: !!myquosure * rhs + Backtrace: + ▆ + 1. └─PoweREST::vis_XGBoost(...) + 2. ├─base::eval(parse(text = txt3)) + 3. │ └─base::eval(parse(text = txt3)) + 4. └─rayshader::plot_gg(mtplot, width = 3.5, raytrace = FALSE, preview = TRUE) + 5. └─rlang:::Ops.quosure(ggplotobj2$layers[[i]]$geom$default_aes$size, pointcontract) + 6. └─rlang::abort(...) + Execution halted + ``` + +# PPQplan + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/allenzhuaz/PPQplan +* Source code: https://github.com/cran/PPQplan +* Date/Publication: 2020-10-08 04:30:06 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "PPQplan")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘PPQnote.Rmd’ using rmarkdown + --- finished re-building ‘PPQnote.Rmd’ + + --- re-building ‘PPQplan-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 12.1Mb + sub-directories of 1Mb or more: + doc 12.0Mb + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ppseq + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/zabore/ppseq +* Source code: https://github.com/cran/ppseq +* Date/Publication: 2024-09-04 22:20:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "ppseq")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘one_sample_expansion.Rmd’ using rmarkdown + + Quitting from one_sample_expansion.Rmd:182-188 [unnamed-chunk-13] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'two_sample_randomized.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘two_sample_randomized.Rmd’ + + SUMMARY: processing the following files failed: + ‘one_sample_expansion.Rmd’ ‘two_sample_randomized.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.0Mb + sub-directories of 1Mb or more: + doc 10.5Mb + ``` + +# precintcon + +
+ +* Version: 2.3.0 +* GitHub: https://github.com/lucasvenez/precintcon +* Source code: https://github.com/cran/precintcon +* Date/Publication: 2016-07-17 13:49:19 +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "precintcon")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘precintcon-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pplot.deciles + > ### Title: Plot deciles + > ### Aliases: pplot.deciles precintcon.plot.deciles + > ### Keywords: deciles precipitation + > + > ### ** Examples + > + ... + 1. └─precintcon::pplot.deciles(monthly) + 2. └─precintcon::precintcon.plot.deciles(...) + 3. └─base::mapply(...) + 4. └─precintcon (local) ``(...) + 5. └─ggplot2::geom_boxplot(...) + 6. └─ggplot2::layer(...) + 7. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)") + 8. └─lifecycle:::deprecate_stop0(msg) + 9. └─rlang::cnd_signal(...) + Execution halted + ``` + +# predictMe + +
+ +* Version: 0.1 +* GitHub: https://github.com/mmiche/predictMe +* Source code: https://github.com/cran/predictMe +* Date/Publication: 2022-05-24 09:40:02 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "predictMe")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘predictMe-Ex.R’ failed + The error most likely occurred in: + + > ### Name: makeTablePlot + > ### Title: Tabularize the essential result of the predictMe package. + > ### Aliases: makeTablePlot + > + > ### ** Examples + > + > # Simulate data set with continuous outcome (use all default values) + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─predictMe::makeTablePlot(...) + 2. └─ggplot2::scale_fill_continuous(high = "#132B43", low = "#56B1F7") + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘predictMe.Rmd’ using rmarkdown + + Quitting from predictMe.Rmd:94-99 [unnamed-chunk-4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'predictMe.Rmd' failed with diagnostics: + Unknown scale type: + --- failed re-building ‘predictMe.Rmd’ + + SUMMARY: processing the following file failed: + ‘predictMe.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# prevR + +
+ +* Version: 5.0.0 +* GitHub: https://github.com/larmarange/prevR +* Source code: https://github.com/cran/prevR +* Date/Publication: 2023-05-15 18:50:03 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "prevR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro_prevR.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.4Mb + sub-directories of 1Mb or more: + data 7.5Mb + ``` + +# probably + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/tidymodels/probably +* Source code: https://github.com/cran/probably +* Date/Publication: 2024-02-23 03:20:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "probably")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + + `actual$ymin` is absent + `expected$ymin` is a character vector ('lower') + + `actual$ymax` is absent + `expected$ymax` is a character vector ('upper') + + [ FAIL 2 | WARN 0 | SKIP 46 | PASS 466 ] + Error: Test failures + Execution halted + ``` + +# processmapR + +
+ +* Version: 0.5.6 +* GitHub: https://github.com/bupaverse/processmapr +* Source code: https://github.com/cran/processmapR +* Date/Publication: 2024-12-03 12:50:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "processmapR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(processmapR) + + Attaching package: 'processmapR' + + The following object is masked from 'package:stats': + + ... + 10. └─processmapR:::return_plotly(p, plotly) + 11. ├─plotly::ggplotly(p) + 12. └─plotly:::ggplotly.ggplot(p) + 13. └─plotly::gg2list(...) + ── Failure ('test_trace_explorer.R:240:3'): test trace_explorer on eventlog with param `plotly` ── + `chart` inherits from 'gg'/'ggplot' not 'plotly'. + + [ FAIL 6 | WARN 0 | SKIP 11 | PASS 105 ] + Error: Test failures + Execution halted + ``` + +# profoc + +
+ +* Version: 1.3.3 +* GitHub: https://github.com/BerriJ/profoc +* Source code: https://github.com/cran/profoc +* Date/Publication: 2024-09-21 22:10:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "profoc")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘class.Rmd’ using rmarkdown + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + --- finished re-building ‘class.Rmd’ + + --- re-building ‘production.Rmd’ using rmarkdown + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + --- finished re-building ‘production.Rmd’ + + --- re-building ‘profoc.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 20.6Mb + sub-directories of 1Mb or more: + doc 1.4Mb + libs 18.4Mb + ``` + +# psborrow + +
+ +* Version: 0.2.2 +* GitHub: NA +* Source code: https://github.com/cran/psborrow +* Date/Publication: 2025-02-19 13:40:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "psborrow")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(psborrow) + > + > test_check("psborrow") + Input all is found in pred. Any other input is disregarded. + [ FAIL 10 | WARN 0 | SKIP 1 | PASS 144 ] + + ... + `expected` is a character vector ('ref') + ── Failure ('test-plots.R:126:5'): Ensure output is producing a ggplot2 object with appropriate parameters ── + p1$labels$yintercept (`actual`) not equal to "ref" (`expected`). + + `actual` is NULL + `expected` is a character vector ('ref') + + [ FAIL 10 | WARN 0 | SKIP 1 | PASS 144 ] + Error: Test failures + Execution halted + ``` + +* checking whether package ‘psborrow’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/psborrow/new/psborrow.Rcheck/00install.out’ for details. + ``` + +# pscore + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/JWiley/score-project +* Source code: https://github.com/cran/pscore +* Date/Publication: 2022-05-13 22:30:02 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "pscore")` for more info + +
+ +## Newly broken + +* checking whether package ‘pscore’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. + ``` + +# pubh + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/josie-athens/pubh +* Source code: https://github.com/cran/pubh +* Date/Publication: 2024-10-08 05:00:03 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "pubh")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pubh-Ex.R’ failed + The error most likely occurred in: + + > ### Name: axis_labs + > ### Title: Apply labels from variables to axis-labels in plots. + > ### Aliases: axis_labs + > + > ### ** Examples + > + > data(kfm, package = "ISwR") + ... + > kfm |> + + gf_point(weight ~ dl.milk) |> + + gf_lm(col = 2, interval = "confidence", col = 2) |> + + axis_labs() + Warning in rep(yes, length.out = len) : + 'x' is NULL so the result will be NULL + Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : + replacement has length zero + Calls: axis_labs -> ifelse + Execution halted + ``` + +# qlifetable + +
+ +* Version: 0.0.2-6 +* GitHub: NA +* Source code: https://github.com/cran/qlifetable +* Date/Publication: 2025-04-11 22:30:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "qlifetable")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘qlifetable-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.qlifetable + > ### Title: Graphical representation in a 4x4 raster of a qlifetable data + > ### frame. + > ### Aliases: plot.qlifetable + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(out, show.plot = FALSE) + 2. └─qlifetable:::plot.qlifetable(out, show.plot = FALSE) + 3. └─ggplot2::scale_fill_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + data 5.0Mb + ``` + +# quantities + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/r-quantities/quantities +* Source code: https://github.com/cran/quantities +* Date/Publication: 2025-01-18 21:20:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "quantities")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +# QurvE + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/NicWir/QurvE +* Source code: https://github.com/cran/QurvE +* Date/Publication: 2024-01-26 12:40:14 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "QurvE")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘QurvE-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.grid + > ### Title: Plot a matrix of growth curve panels + > ### Aliases: plot.grid + > + > ### ** Examples + > + > # Create random growth data set + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─QurvE::plot.grid(res, param = "mu.spline") + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.0Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 2.1Mb + shiny_app 1.2Mb + ``` + +# R2sample + +
+ +* Version: 4.0.1 +* GitHub: NA +* Source code: https://github.com/cran/R2sample +* Date/Publication: 2025-04-30 15:50:02 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "R2sample")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘R2sample.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.8Mb + sub-directories of 1Mb or more: + libs 7.4Mb + ``` + +# r6qualitytools + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/Fabianenc/r6qualitytools +* Source code: https://github.com/cran/r6qualitytools +* Date/Publication: 2024-10-03 19:30:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "r6qualitytools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘r6qualitytools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dotPlot + > ### Title: dotPlot: Function to create a dot plot + > ### Aliases: dotPlot + > + > ### ** Examples + > + > # Create some data and grouping + ... + 30. └─vctrs::vec_default_cast(...) + 31. ├─base::withRestarts(...) + 32. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 33. │ └─base (local) doWithOneRestart(return(expr), restart) + 34. └─vctrs::stop_incompatible_cast(...) + 35. └─vctrs::stop_incompatible_type(...) + 36. └─vctrs:::stop_incompatible(...) + 37. └─vctrs:::stop_vctrs(...) + 38. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# Radviz + +
+ +* Version: 0.9.4 +* GitHub: https://github.com/yannabraham/Radviz +* Source code: https://github.com/cran/Radviz +* Date/Publication: 2025-05-09 06:30:02 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "Radviz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Radviz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Radviz-package + > ### Title: Radviz: Project Multidimensional Data in 2D Space + > ### Aliases: Radviz Radviz-package + > ### Keywords: internal + > + > ### ** Examples + > + ... + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the Radviz package. + Please report the issue at . + > plot(rv,anchors.only=FALSE) + Error in plot.radviz(rv, anchors.only = FALSE) : + 'language' object cannot be coerced to type 'double' + Calls: plot -> plot.radviz + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘multivariate_analysis.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + doc 3.9Mb + libs 2.5Mb + ``` + +# rassta + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/bafuentes/rassta +* Source code: https://github.com/cran/rassta +* Date/Publication: 2024-08-19 06:20:13 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "rassta")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rassta-Ex.R’ failed + The error most likely occurred in: + + > ### Name: select_functions + > ### Title: Select Constrained Univariate Distribution Functions + > ### Aliases: select_functions + > + > ### ** Examples + > + > require(terra) + ... + > tvars <- terra::rast(tf) + > # Single-layer SpatRaster of topographic classification units + > ## 5 classification units + > tcf <- list.files(path = p, pattern = "topography.tif", full.names = TRUE) + > tcu <- terra::rast(tcf) + > # Automatic selection of distribution functions + > tdif <- select_functions(cu.rast = tcu, var.rast = tvars, fun = mean) + Error in pm[[2]] : subscript out of bounds + Calls: select_functions -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("rassta") + + } + + Attaching package: 'rassta' + + ... + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests Error in pm[[2]] : subscript out of bounds + Calls: ... select_functions -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# rasterdiv + +
+ +* Version: 0.3.6 +* GitHub: https://github.com/mattmar/rasterdiv +* Source code: https://github.com/cran/rasterdiv +* Date/Publication: 2024-11-06 11:20:03 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "rasterdiv")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘rasterdiv_01_Basics.Rmd’ using rmarkdown + ``` + +# rater + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/jeffreypullin/rater +* Source code: https://github.com/cran/rater +* Date/Publication: 2023-09-11 17:40:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "rater")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rater) + * The rater package uses `Stan` to fit bayesian models. + * If you are working on a local, multicore CPU with excess RAM please call: + * options(mc.cores = parallel::detectCores()) + * This will allow Stan to run inference on multiple cores in parallel. + > + ... + ── Failure ('test_plotting.R:65:3'): plot_theta_points output has correct type ── + get_geoms(ds_plot) (`actual`) not equal to c("GeomPoint", "GeomErrorbar") (`expected`). + + `names(actual)` is a character vector ('geom_point', 'geom_errorbar') + `names(expected)` is absent + + [ FAIL 4 | WARN 0 | SKIP 6 | PASS 375 ] + Error: Test failures + In addition: There were 12 warnings (use warnings() to see them) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 124.5Mb + sub-directories of 1Mb or more: + libs 123.7Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) as_mcmc.list.Rd:5: Lost braces; missing escapes or markup? + 5 | \title{Convert a rater_fit object to a {coda} \code{mcmc.list} object.} + | ^ + checkRd: (-1) as_mcmc.list.Rd:16: Lost braces; missing escapes or markup? + 16 | Convert a rater_fit object to a {coda} \code{mcmc.list} object. + | ^ + checkRd: (-1) as_mcmc.list.Rd:13: Lost braces; missing escapes or markup? + 13 | A {coda} mcmc.list object. + | ^ + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# ratlas + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/atlas-aai/ratlas +* Source code: https://github.com/cran/ratlas +* Date/Publication: 2024-11-06 16:20:02 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "ratlas")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ratlas) + NOTE: Either Arial Narrow or Montserrat fonts are required to use these themes. + Please use ratlas::import_montserrat() to install Montserrat and + if Arial Narrow is not on your system, please see https://bit.ly/arialnarrow + > + ... + • okabeito-color-scales/okabeito-fill.svg + • okabeito-color-scales/okabeito-lighten.svg + • stat-bin/bins30-bound0.svg + • stat-bin/no-color-hist.svg + • stat-bin/one-bin.svg + • stat-bin/trimmed-hist-bound0.svg + • stat-bin/trimmed-hist-center0.svg + • themes/theme-atlas.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘plotting.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.1Mb + sub-directories of 1Mb or more: + doc 2.6Mb + rstudio 1.6Mb + ``` + +# RavenR + +
+ +* Version: 2.2.2 +* GitHub: https://github.com/rchlumsk/RavenR +* Source code: https://github.com/cran/RavenR +* Date/Publication: 2024-05-07 03:30:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "RavenR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RavenR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rvn_met_recordplot + > ### Title: EC Climate Gauge Record Overlap Visualization + > ### Aliases: rvn_met_recordplot + > + > ### ** Examples + > + > # load metadata from RavenR sample data + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─RavenR::rvn_met_recordplot(...) + 2. └─ggplot2::scale_color_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +# RBesT + +
+ +* Version: 1.8-2 +* GitHub: https://github.com/Novartis/RBesT +* Source code: https://github.com/cran/RBesT +* Date/Publication: 2025-04-25 18:30:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "RBesT")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RBesT-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mix + > ### Title: Mixture Distributions + > ### Aliases: mix dmix pmix qmix rmix [[.mix + > + > ### ** Examples + > + > ## a beta mixture + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 94.6Mb + sub-directories of 1Mb or more: + libs 93.2Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# RcmdrPlugin.RiskDemo + +
+ +* Version: 3.2 +* GitHub: NA +* Source code: https://github.com/cran/RcmdrPlugin.RiskDemo +* Date/Publication: 2024-02-06 09:20:02 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RcmdrPlugin.RiskDemo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: drawIncidenceFin + > ### Title: Plotting incidence curves of an epidemic with Finnish data + > ### Aliases: drawIncidenceFin + > + > ### ** Examples + > + > data(dataCovidFin) + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# rddensity + +
+ +* Version: 2.6 +* GitHub: NA +* Source code: https://github.com/cran/rddensity +* Date/Publication: 2024-10-06 08:30:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "rddensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rddensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rddensity + > ### Title: Manipulation Testing Using Local Polynomial Density Estimation + > ### Aliases: rddensity + > + > ### ** Examples + > + > ### Continuous Density + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# registr + +
+ +* Version: 2.1.0 +* GitHub: NA +* Source code: https://github.com/cran/registr +* Date/Publication: 2022-10-02 21:40:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "registr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘incomplete_curves.Rmd’ using rmarkdown + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + doc 1.8Mb + libs 3.1Mb + ``` + +# regtomean + +
+ +* Version: 1.2 +* GitHub: NA +* Source code: https://github.com/cran/regtomean +* Date/Publication: 2024-12-17 15:00:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "regtomean")` for more info + +
+ +## Newly broken + +* checking whether package ‘regtomean’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘regtomean’ + See ‘/tmp/workdir/regtomean/new/regtomean.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘plyr’ + ``` + +# rempsyc + +
+ +* Version: 0.1.9 +* GitHub: https://github.com/rempsyc/rempsyc +* Source code: https://github.com/cran/rempsyc +* Date/Publication: 2025-02-01 23:40:05 UTC +* Number of recursive dependencies: 176 + +Run `revdepcheck::cloud_details(, "rempsyc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rempsyc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: nice_normality + > ### Title: Easy normality check per group + > ### Aliases: nice_normality + > ### Keywords: QQ density distribution normality plots + > + > ### ** Examples + > + ... + 30. │ └─ggplot2 (local) FUN(X[[i]], ...) + 31. │ └─self$draw_group(group, panel_params, coord, ...) + 32. │ └─ggplot2 (local) draw_group(...) + 33. │ └─ggplot2 (local) draw_group(..., self = self) + 34. └─base::.handleSimpleError(...) + 35. └─rlang (local) h(simpleError(msg, call)) + 36. └─handlers[[1L]](cnd) + 37. └─cli::cli_abort(...) + 38. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rempsyc) + Suggested APA citation: Thériault, R. (2023). rempsyc: Convenience functions for psychology. + Journal of Open Source Software, 8(87), 5466. https://doi.org/10.21105/joss.05466 + > + > test_check("rempsyc") + [ FAIL 2 | WARN 2 | SKIP 20 | PASS 44 ] + ... + 30. │ └─ggplot2 (local) draw_group(..., self = self) + 31. └─base::.handleSimpleError(...) + 32. └─rlang (local) h(simpleError(msg, call)) + 33. └─handlers[[1L]](cnd) + 34. └─cli::cli_abort(...) + 35. └─rlang::abort(...) + + [ FAIL 2 | WARN 2 | SKIP 20 | PASS 44 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘assumptions.Rmd’ using rmarkdown + + Quitting from assumptions.Rmd:134-140 [unnamed-chunk-11] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'assumptions.Rmd' failed with diagnostics: + Problem while converting geom to grob. + ℹ Error occurred in the 1st layer. + Caused by error in `check_linewidth()`: + ! could not find function "check_linewidth" + --- failed re-building ‘assumptions.Rmd’ + + --- re-building ‘contrasts.Rmd’ using rmarkdown + ``` + +# ReturnCurves + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/lidiamandre/ReturnCurves +* Source code: https://github.com/cran/ReturnCurves +* Date/Publication: 2025-02-05 17:40:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "ReturnCurves")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ReturnCurves-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adf_est + > ### Title: Estimation of the Angular Dependence Function (ADF) + > ### Aliases: adf_est + > + > ### ** Examples + > + > library(ReturnCurves) + ... + 21. └─vctrs::vec_default_cast(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_cast(...) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ReturnCurves.Rmd’ using rmarkdown + + Quitting from ReturnCurves.Rmd:309-312 [plotsadfest] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ReturnCurves.Rmd' failed with diagnostics: + Can't convert `na_value` to . + --- failed re-building ‘ReturnCurves.Rmd’ + + SUMMARY: processing the following file failed: + ‘ReturnCurves.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# rLakeHabitat + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/rLakeHabitat +* Date/Publication: 2025-04-15 19:30:02 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "rLakeHabitat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rLakeHabitat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bathyMap + > ### Title: Plot Bathymetry Map + > ### Aliases: bathyMap + > + > ### ** Examples + > + > #load raster + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─rLakeHabitat::bathyMap(DEM, contours = TRUE, units = "m", labels = TRUE) + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─rLakeHabitat::bathyMap(dat, units = "m", plotTitle = "Lake Monona") + 5. └─ggplot2::scale_fill_continuous(...) + 6. └─ggplot2:::scale_backward_compatibility(...) + 7. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 8. └─rlang::abort(...) + + [ FAIL 2 | WARN 3 | SKIP 0 | PASS 211 ] + Error: Test failures + Execution halted + ``` + +# RNAseqQC + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/frederikziebell/RNAseqQC +* Source code: https://github.com/cran/RNAseqQC +* Date/Publication: 2024-07-15 14:40:02 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "RNAseqQC")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘data.Rmd’ using rmarkdown + --- finished re-building ‘data.Rmd’ + + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.0Mb + sub-directories of 1Mb or more: + data 4.5Mb + doc 2.3Mb + ``` + +# roahd + +
+ +* Version: 1.4.3 +* GitHub: https://github.com/astamm/roahd +* Source code: https://github.com/cran/roahd +* Date/Publication: 2021-11-04 00:10:02 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "roahd")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘roahd-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.depthgram + > ### Title: Specialized method to plot 'depthgram' objects + > ### Aliases: plot.depthgram + > + > ### ** Examples + > + > N <- 50 + ... + + N, + + centerline = sin(2 * pi * grid), + + Cov = Cov + + ) + > names <- paste0("id_", 1:nrow(Data[[1]])) + > DG <- depthgram(Data, marginal_outliers = TRUE, ids = names) + > plot(DG) + Error in pm[[2]] : subscript out of bounds + Calls: plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.4Mb + sub-directories of 1Mb or more: + data 5.0Mb + doc 1.7Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) outliergram.Rd:49-51: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:52-54: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:55-58: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:59-62: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:63-65: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:66-69: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:70-71: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) outliergram.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) outliergram.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# romic + +
+ +* Version: 1.1.3 +* GitHub: NA +* Source code: https://github.com/cran/romic +* Date/Publication: 2023-09-21 05:40:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "romic")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 3. │ │ └─base::withCallingHandlers(...) + 4. │ ├─plotly::ggplotly(heatmap_plot) %>% plotly::layout(margin = 0) + 5. │ ├─plotly::ggplotly(heatmap_plot) + 6. │ └─plotly:::ggplotly.ggplot(heatmap_plot) + 7. │ └─plotly::gg2list(...) + 8. └─plotly::layout(., margin = 0) + + [ FAIL 1 | WARN 0 | SKIP 7 | PASS 66 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) update_tidy_omic.Rd:16-17: Lost braces + 16 | in \code{updated_tidy_data} (names) and the table {features, samples, + | ^ + ``` + +# roptions + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/roptions +* Date/Publication: 2020-05-11 11:10:06 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "roptions")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘roptions-Ex.R’ failed + The error most likely occurred in: + + > ### Name: box.spread + > ### Title: Box Spread Strategy Function + > ### Aliases: box.spread + > + > ### ** Examples + > + > box.spread(100, 105, 95, 110, 3.2, 2.6, 1.1, 2.4) + ... + 35 5.7 + 36 5.7 + 37 5.7 + 38 5.7 + 39 5.7 + 40 5.7 + 41 5.7 + Error in pm[[2]] : subscript out of bounds + Calls: box.spread -> print -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# SAMprior + +
+ +* Version: 2.0.0 +* GitHub: NA +* Source code: https://github.com/cran/SAMprior +* Date/Publication: 2025-01-17 14:50:06 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "SAMprior")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SAMprior-Ex.R’ failed + The error most likely occurred in: + + > ### Name: SAM_prior + > ### Title: Calculating SAM priors + > ### Aliases: SAM_prior SAM_prior.betaMix SAM_prior.gammaMix + > ### SAM_prior.normMix + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# saros + +
+ +* Version: 1.5.1 +* GitHub: https://github.com/NIFU-NO/saros +* Source code: https://github.com/cran/saros +* Date/Publication: 2025-02-12 22:50:01 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "saros")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘saros-Ex.R’ failed + The error most likely occurred in: + + > ### Name: girafe + > ### Title: Pull global plotting settings before displaying plot + > ### Aliases: girafe + > + > ### ** Examples + > + > plot <- makeme(data = ex_survey, dep = b_1) + ... + 21. │ └─base::lapply(...) + 22. │ └─ggplot2 (local) FUN(X[[i]], ...) + 23. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 24. │ └─self$draw_panel(...) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(saros) + > + > testthat::test_check("saros") + Starting 2 test processes + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 211 ] + ... + 24. │ └─self$draw_panel(...) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 211 ] + Error: Test failures + Execution halted + ``` + +# scoringutils + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/epiforecasts/scoringutils +* Source code: https://github.com/cran/scoringutils +* Date/Publication: 2025-03-03 18:10:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "scoringutils")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Deprecated-functions.Rmd’ using rmarkdown + --- finished re-building ‘Deprecated-functions.Rmd’ + + --- re-building ‘Deprecated-visualisations.Rmd’ using rmarkdown + ``` + +# scplot + +
+ +* Version: 0.5.1 +* GitHub: NA +* Source code: https://github.com/cran/scplot +* Date/Publication: 2025-03-01 13:10:03 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "scplot")` for more info + +
+ +## Newly broken + +* checking whether package ‘scplot’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/scplot/new/scplot.Rcheck/00install.out’ for details. + ``` + +# scRNAstat + +
+ +* Version: 0.1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/scRNAstat +* Date/Publication: 2025-03-08 08:58:55 UTC +* Number of recursive dependencies: 155 + +Run `revdepcheck::cloud_details(, "scRNAstat")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 8.1Mb + sub-directories of 1Mb or more: + data 8.0Mb + ``` + +## In both + +* checking whether package ‘scRNAstat’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: namespace ‘colorspace’ is not available and has been replaced + See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details. + ``` + +# scUtils + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/scUtils +* Date/Publication: 2020-06-25 16:20:02 UTC +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "scUtils")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(scUtils) + > + > test_check("scUtils") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plots.R:59:3'): all kinds of colnames are allowed ──────────── + p$labels not equal to list(y = "Dim2", x = "Dim1", colour = "expression"). + Length mismatch: comparison on first 2 components + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# SCVA + +
+ +* Version: 1.3.1 +* GitHub: NA +* Source code: https://github.com/cran/SCVA +* Date/Publication: 2020-01-09 22:50:10 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "SCVA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SCVA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: graphly + > ### Title: Interactive plot of single-case data + > ### Aliases: graphly + > ### Keywords: Single-case design Graph + > + > ### ** Examples + > + > data(AB) + > graphly(design = "AB", data = AB) + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + ℹ The deprecated feature was likely used in the SCVA package. + Please report the issue to the authors. + Error in pm[[2]] : subscript out of bounds + Calls: graphly -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# SDMtune + +
+ +* Version: 1.3.2 +* GitHub: https://github.com/ConsBiol-unibern/SDMtune +* Source code: https://github.com/cran/SDMtune +* Date/Publication: 2024-12-16 16:50:06 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "SDMtune")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(SDMtune) + + _____ ____ __ ___ __ + / ___/ / __ \ / |/ // /_ __ __ ____ ___ + \__ \ / / / // /|_/ // __// / / // __ \ / _ \ + ___/ // /_/ // / / // /_ / /_/ // / / // __/ + ... + `expected` is a character vector ('Var2') + ── Failure ('test-plotCor.R:6:3'): The plot has the correct labels and text size ── + p$labels$y (`actual`) not equal to "Var1" (`expected`). + + `actual` is NULL + `expected` is a character vector ('Var1') + + [ FAIL 2 | WARN 0 | SKIP 55 | PASS 315 ] + Error: Test failures + Execution halted + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + R 3.0Mb + libs 1.0Mb + ``` + +# seAMLess + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/eonurk/seAMLess +* Source code: https://github.com/cran/seAMLess +* Date/Publication: 2024-11-11 12:50:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "seAMLess")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘seAMLess-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ternaryPlot + > ### Title: Given the immune compositions (ICs) of bulk-RNA samples, this + > ### function creates a ternary plot similar to ALOT tube from EuroFlow + > ### analysis and Figure 1E of our paper. + > ### Aliases: ternaryPlot + > + > ### ** Examples + ... + > + > data(minRes) + > ternaryPlot(minRes) + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the ggtern package. + Please report the issue to the authors. + Error in validate_theme(theme) : could not find function "validate_theme" + Calls: ... ggplot_build.ggplot -> layers_add_or_remove_mask -> + Execution halted + ``` + +# see + +
+ +* Version: 0.11.0 +* GitHub: https://github.com/easystats/see +* Source code: https://github.com/cran/see +* Date/Publication: 2025-03-11 16:20:02 UTC +* Number of recursive dependencies: 246 + +Run `revdepcheck::cloud_details(, "see")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘see-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_from_list + > ### Title: Create ggplot2 geom(s) from a list + > ### Aliases: geom_from_list geoms_from_list + > + > ### ** Examples + > + > ## Don't show: + ... + 11. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 12. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 13. │ └─base::withCallingHandlers(...) + 14. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) + 15. └─l$map_statistic(d, plot) + 16. └─ggplot2 (local) map_statistic(..., self = self) + 17. └─ggplot2:::check_nondata_cols(...) + 18. └─cli::cli_abort(c(problem, issues, i = hint), call = NULL) + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # graphics engine changed in R 4.4, and so snapshots generated on + > # previous R version won't work + > if (getRversion() >= "4.4.0") { + + library(testthat) + + library(see) + + + + test_check("see") + ... + 30. │ └─ggplot2 (local) draw_group(..., self = self) + 31. └─base::.handleSimpleError(...) + 32. └─rlang (local) h(simpleError(msg, call)) + 33. └─handlers[[1L]](cnd) + 34. └─cli::cli_abort(...) + 35. └─rlang::abort(...) + + [ FAIL 1 | WARN 8 | SKIP 23 | PASS 34 ] + Error: Test failures + Execution halted + ``` + +# seedreg + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/seedreg +* Date/Publication: 2022-07-07 21:20:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "seedreg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘seedreg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: BC_model + > ### Title: Analysis: Logistic regression Brain-Cousens hormesis models + > ### Aliases: BC_model + > + > ### ** Examples + > + > library(seedreg) + ... + 28. └─vctrs::stop_incompatible_type(...) + 29. └─vctrs:::stop_incompatible(...) + 30. └─vctrs:::stop_vctrs(...) + 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Warning message: + Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the seedreg package. + Please report the issue to the authors. + Execution halted + ``` + +# sglg + +
+ +* Version: 0.2.2 +* GitHub: NA +* Source code: https://github.com/cran/sglg +* Date/Publication: 2022-09-04 03:50:01 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "sglg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sglg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: deviance_residuals + > ### Title: Deviance Residuals for a Generalized Log-gamma Regression Model + > ### Aliases: deviance_residuals + > + > ### ** Examples + > + > # Example 1 + > n <- 300 + > error <- rglg(n,0,1,1) + > y <- 0.5 + error + > fit <- glg(y~1,data=as.data.frame(y)) + > deviance_residuals(fit) + Error in pm[[2]] : subscript out of bounds + Calls: deviance_residuals ... dots2plots -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# sgsR + +
+ +* Version: 1.4.5 +* GitHub: https://github.com/tgoodbody/sgsR +* Source code: https://github.com/cran/sgsR +* Date/Publication: 2024-03-03 15:10:02 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "sgsR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + `expected` is a character vector ('zq90') + ── Failure ('test-utils-plot.R:19:3'): scatter messages ──────────────────────── + o1$labels$x (`actual`) not equal to "pzabove2" (`expected`). + + `actual` is NULL + `expected` is a character vector ('pzabove2') + + [ FAIL 2 | WARN 112 | SKIP 19 | PASS 508 ] + Error: Test failures + Execution halted + ``` + +# SHAPforxgboost + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/liuyanguu/SHAPforxgboost +* Source code: https://github.com/cran/SHAPforxgboost +* Date/Publication: 2023-05-29 17:20:07 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "SHAPforxgboost")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SHAPforxgboost-Ex.R’ failed + The error most likely occurred in: + + > ### Name: shap.plot.force_plot + > ### Title: Make the SHAP force plot + > ### Aliases: shap.plot.force_plot + > + > ### ** Examples + > + > + ... + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the SHAPforxgboost package. + Please report the issue at + . + Data has N = 150 | zoom in length is 50 at location 90. + + Error in upgradeUnit.default(x) : Not a unit object + Calls: ... is.unit -> convertUnit -> upgradeUnit -> upgradeUnit.default + Execution halted + ``` + +# shapviz + +
+ +* Version: 0.9.7 +* GitHub: https://github.com/ModelOriented/shapviz +* Source code: https://github.com/cran/shapviz +* Date/Publication: 2025-01-19 19:20:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "shapviz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘shapviz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sv_force + > ### Title: SHAP Force Plot + > ### Aliases: sv_force sv_force.default sv_force.shapviz sv_force.mshapviz + > + > ### ** Examples + > + > dtrain <- xgboost::xgb.DMatrix( + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'fastshap', 'h2o', 'lightgbm' + ``` + +# simDAG + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/RobinDenz1/siMDAG +* Source code: https://github.com/cran/simDAG +* Date/Publication: 2025-03-30 16:00:01 UTC +* Number of recursive dependencies: 150 + +Run `revdepcheck::cloud_details(, "simDAG")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘v_cookbook.Rmd’ using rmarkdown + + Quitting from v_cookbook.Rmd:224-237 [unnamed-chunk-11] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! An error occured when processing node 'Y'. The message was: + Error: An error occured when processing node '.'. The message was: + Error in rowSums(mapply("*", data, betas)): 'x' must be an array of at least two dimensions + ... + + Error: processing vignette 'v_cookbook.Rmd' failed with diagnostics: + An error occured when processing node 'Y'. The message was: + Error: An error occured when processing node '.'. The message was: + Error in rowSums(mapply("*", data, betas)): 'x' must be an array of at least two dimensions + + + --- failed re-building ‘v_cookbook.Rmd’ + + --- re-building ‘v_covid_example.Rmd’ using rmarkdown + ``` + +# sjPlot + +
+ +* Version: 2.8.17 +* GitHub: https://github.com/strengejacke/sjPlot +* Source code: https://github.com/cran/sjPlot +* Date/Publication: 2024-11-29 11:20:03 UTC +* Number of recursive dependencies: 194 + +Run `revdepcheck::cloud_details(, "sjPlot")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘blackwhitefigures.Rmd’ using rmarkdown + ``` + +# skewlmm + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/fernandalschumacher/skewlmm +* Source code: https://github.com/cran/skewlmm +* Date/Publication: 2024-12-15 00:50:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "skewlmm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘skewlmm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot + > ### Title: Plot a smn.lmm or smsn.lmm object + > ### Aliases: plot.SMN plot.SMSN + > ### Keywords: hplot + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(fm1) + 2. └─skewlmm:::plot.SMN(fm1) + 3. └─ggplot2::scale_color_continuous(high = "#132B43", low = "#56B1F7") + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +# smer + +
+ +* Version: 0.0.1 +* GitHub: https://github.com/lcrawlab/sme +* Source code: https://github.com/cran/smer +* Date/Publication: 2025-01-16 15:50:01 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "smer")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘smer.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 45.7Mb + sub-directories of 1Mb or more: + libs 42.7Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# soc.ca + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/Rsoc/soc.ca +* Source code: https://github.com/cran/soc.ca +* Date/Publication: 2021-09-02 22:50:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "soc.ca")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘soc.ca-Ex.R’ failed + The error most likely occurred in: + + > ### Name: map.ind + > ### Title: Map the individuals of a soc.ca analysis + > ### Aliases: map.ind + > + > ### ** Examples + > + > example(soc.ca) + ... + > map + scale_color_continuous(low = "white", high = "red") + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_color_continuous(low = "white", high = "red") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘FactoMineR’ ‘flextable’ ‘htmlTable’ ‘stringr’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) map.active.Rd:82: Lost braces + 82 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.add.Rd:99: Lost braces + 99 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.csa.mca.Rd:35: Lost braces + 35 | \link{soc.csa}, \link{map.csa.all}, link{map.csa.mca.array} + | ^ + checkRd: (-1) map.ctr.Rd:85: Lost braces + ... + | ^ + checkRd: (-1) map.ind.Rd:80: Lost braces + 80 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.mod.Rd:82: Lost braces + 82 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.sup.Rd:82: Lost braces + 82 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 938 marked UTF-8 strings + ``` + +# SoupX + +
+ +* Version: 1.6.2 +* GitHub: https://github.com/constantAmateur/SoupX +* Source code: https://github.com/cran/SoupX +* Date/Publication: 2022-11-01 14:00:03 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "SoupX")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘pbmcTutorial.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.8Mb + sub-directories of 1Mb or more: + data 3.9Mb + doc 1.0Mb + ``` + +# spectralR + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/olehprylutskyi/spectralR +* Source code: https://github.com/cran/spectralR +* Date/Publication: 2023-08-24 09:20:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "spectralR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("spectralR") + + } + + test_get.pixel.data.R......... 1 tests OK 91ms + + test_prepare.vector.data.R.... 1 tests OK + ... + test_prepare.vector.data.R.... 8 tests OK + test_prepare.vector.data.R.... 9 tests OK + test_prepare.vector.data.R.... 10 tests OK + test_prepare.vector.data.R.... 11 tests OK + test_prepare.vector.data.R.... 12 tests OK 45ms + + test_spectral.curves.plot.R... 1 tests OK Joining with `by = join_by(variable)` + Error in if (msg != "") { : the condition has length > 1 + Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun + Execution halted + ``` + +# spinifex + +
+ +* Version: 0.3.8 +* GitHub: https://github.com/nspyrison/spinifex +* Source code: https://github.com/cran/spinifex +* Date/Publication: 2025-01-08 22:10:02 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "spinifex")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(spinifex) + Loading required package: tourr + -------------------------------------------------------- + spinifex --- version 0.3.8 + Please share bugs, suggestions, and feature requests at: + ... + 2. │ └─base::withCallingHandlers(...) + 3. └─spinifex::play_tour_path(tour_path = tpath, data = dat_std, angle = 1) + 4. └─spinifex (local) render_type(frames = tour_df, ...) + 5. ├─plotly::ggplotly(p = gg, tooltip = "tooltip") + 6. └─plotly:::ggplotly.ggplot(p = gg, tooltip = "tooltip") + 7. └─plotly::gg2list(...) + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 80 ] + Error: Test failures + Execution halted + ``` + +# sport + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/gogonzo/sport +* Source code: https://github.com/cran/sport +* Date/Publication: 2024-01-08 23:50:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "sport")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > test_check("sport") + Loading required package: sport + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_output.R:30:3'): Scale is labelled 'r' ─────────────────────── + p$labels$y not identical to "r". + target is NULL, current is character + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 7504 marked UTF-8 strings + ``` + +# SqueakR + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/osimon81/SqueakR +* Source code: https://github.com/cran/SqueakR +* Date/Publication: 2022-06-28 09:20:04 UTC +* Number of recursive dependencies: 147 + +Run `revdepcheck::cloud_details(, "SqueakR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘SqueakR.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.8Mb + sub-directories of 1Mb or more: + doc 8.2Mb + ``` + +# statgenGWAS + +
+ +* Version: 1.0.11 +* GitHub: https://github.com/Biometris/statgenGWAS +* Source code: https://github.com/cran/statgenGWAS +* Date/Publication: 2025-03-31 13:30:06 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "statgenGWAS")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("statgenGWAS") + + } + + test_GWAS.R................... 0 tests + test_GWAS.R................... 0 tests + ... + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the statgenGWAS package. + Please report the issue at . + 2: In grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : + for '← 2@3' in 'mbcsToSbcs': <- substituted for ← (U+2190) + 3: `aes_()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the statgenGWAS package. + Please report the issue at . + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 15.2Mb + sub-directories of 1Mb or more: + data 7.0Mb + libs 7.2Mb + ``` + +# statgenGxE + +
+ +* Version: 1.0.9 +* GitHub: https://github.com/Biometris/statgenGxE +* Source code: https://github.com/cran/statgenGxE +* Date/Publication: 2024-09-18 07:10:03 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "statgenGxE")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(statgenGxE) + > + > test_check("statgenGxE") + [ FAIL 8 | WARN 3 | SKIP 17 | PASS 440 ] + + ══ Skipped tests (17) ══════════════════════════════════════════════════════════ + ... + ── Failure ('test-plots.R:354:3'): Option colorGenoBy in scatterFit plot functions correctly ── + p1$labels$colour not equal to "family". + target is NULL, current is character + ── Failure ('test-plots.R:405:3'): VarCov plot gives correct output types ────── + `geoms` not equal to "GeomTile". + names for target but not for current + + [ FAIL 8 | WARN 3 | SKIP 17 | PASS 440 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘asreml’ + ``` + +# statgenHTP + +
+ +* Version: 1.0.8 +* GitHub: https://github.com/Biometris/statgenHTP +* Source code: https://github.com/cran/statgenHTP +* Date/Publication: 2025-04-29 10:30:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "statgenHTP")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("statgenHTP") + + } + + test_TP.R..................... 0 tests + test_TP.R..................... 0 tests + ... + test_detectSerieOut.R......... 7 tests OK + test_detectSerieOut.R......... 8 tests OK + test_detectSerieOut.R......... 9 tests OK Error in inherits(w, class) && grepl(pattern, w$message, ...) : + 'length = 2' in coercion to 'logical(1)' + Calls: ... eval -> expect_warning -> fun -> sapply -> lapply -> FUN + In addition: Warning messages: + 1: 125 failed to parse. + 2: Ignoring unknown labels: + • `colour = ""` + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘asreml’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 8.0Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +# statgenIBD + +
+ +* Version: 1.0.8 +* GitHub: https://github.com/Biometris/statgenIBD +* Source code: https://github.com/cran/statgenIBD +* Date/Publication: 2025-02-05 12:00:02 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "statgenIBD")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("statgenIBD") + + } + + test_IBDprob.R................ 0 tests + test_IBDprob.R................ 0 tests + ... + test_IBDprob.R................ 6 tests OK + test_IBDprob.R................ 7 tests OK + test_IBDprob.R................ 8 tests OK + test_IBDprob.R................ 9 tests OK + test_IBDprob.R................ 9 tests OK + test_IBDprob.R................ 10 tests OK + test_IBDprob.R................ 11 tests OK + test_IBDprob.R................ 12 tests OK Error in if (msg != "") { : the condition has length > 1 + Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.7Mb + sub-directories of 1Mb or more: + extdata 2.4Mb + libs 6.4Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘statgenGWAS’ + All declared Imports should be used. + ``` + +# stats19 + +
+ +* Version: 3.3.1 +* GitHub: https://github.com/ropensci/stats19 +* Source code: https://github.com/cran/stats19 +* Date/Publication: 2025-01-15 08:00:02 UTC +* Number of recursive dependencies: 158 + +Run `revdepcheck::cloud_details(, "stats19")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘blog.Rmd’ using rmarkdown + [WARNING] Citeproc: citation sarkar_street_2018 not found + --- finished re-building ‘blog.Rmd’ + + --- re-building ‘stats19-training-setup.Rmd’ using rmarkdown + --- finished re-building ‘stats19-training-setup.Rmd’ + + --- re-building ‘stats19-training.Rmd’ using rmarkdown + ``` + +# tabledown + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/masiraji/tabledown +* Source code: https://github.com/cran/tabledown +* Date/Publication: 2024-05-02 13:40:03 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "tabledown")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tabledown-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggreliability_plotly + > ### Title: A Function for Creating Item Response Theory based reliability + > ### plot based on plotly. + > ### Aliases: ggreliability_plotly + > + > ### ** Examples + > + ... + Iteration: 17, Log-Lik: -5351.363, Max-Change: 0.00011 + Iteration: 18, Log-Lik: -5351.363, Max-Change: 0.00054 + Iteration: 19, Log-Lik: -5351.363, Max-Change: 0.00012 + Iteration: 20, Log-Lik: -5351.363, Max-Change: 0.00035 + Iteration: 21, Log-Lik: -5351.363, Max-Change: 0.00010 + > + > plot <- ggreliability_plotly(data, model) + Error in pm[[2]] : subscript out of bounds + Calls: ggreliability_plotly -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 551 marked UTF-8 strings + ``` + +# TCIU + +
+ +* Version: 1.2.7 +* GitHub: https://github.com/SOCR/TCIU +* Source code: https://github.com/cran/TCIU +* Date/Publication: 2024-09-15 02:40:02 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "TCIU")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘TCIU-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fmri_image + > ### Title: interactive graph object of the fMRI image + > ### Aliases: fmri_image + > + > ### ** Examples + > + > fmri_generate = fmri_simulate_func(dim_data = c(64, 64, 40), mask = mask) + > fmri_image(fmri_generate$fmri_data, option='manually', voxel_location = c(40,22,33), time = 4) + Error in pm[[2]] : subscript out of bounds + Calls: fmri_image ... add_trace -> add_data -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown + + Quitting from tciu-LT-kimesurface.Rmd:158-160 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics: + Problem while computing layer data. + ... + + Error: processing vignette 'tciu-fMRI-analytics.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘tciu-fMRI-analytics.Rmd’ + + SUMMARY: processing the following files failed: + ‘tciu-LT-kimesurface.Rmd’ ‘tciu-fMRI-analytics.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 14.1Mb + sub-directories of 1Mb or more: + data 1.5Mb + doc 12.0Mb + ``` + +# telraamStats + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/KetsiaGuichard/telraamStats +* Source code: https://github.com/cran/telraamStats +* Date/Publication: 2024-05-27 17:40:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "telraamStats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘telraamStats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg_car_speed_histogram + > ### Title: Histogram of car speed over a period, for a segment or a subset + > ### of segment. + > ### Aliases: gg_car_speed_histogram + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘data-details.Rmd’ using rmarkdown + --- finished re-building ‘data-details.Rmd’ + + --- re-building ‘data-visualization.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 3271 marked UTF-8 strings + ``` + +# thematic + +
+ +* Version: 0.1.6 +* GitHub: https://github.com/rstudio/thematic +* Source code: https://github.com/cran/thematic +* Date/Publication: 2024-07-29 15:50:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "thematic")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘thematic-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sequential_gradient + > ### Title: Control parameters of the sequential colorscale + > ### Aliases: sequential_gradient + > + > ### ** Examples + > + > + > # Gradient from fg to accent + > fg <- sequential_gradient(1, 0) + > thematic_on("black", "white", "salmon", sequential = fg) + > ggplot2::qplot(1:10, 1:10, color = 1:10) + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + Error in adjust_color(user_default$colour, bg, fg, accent) : + Internal error: adjust_color() expects an input of length 1 + Calls: ... -> -> update_defaults -> adjust_color + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(thematic) + > + > test_check("thematic") + [ FAIL 9 | WARN 1 | SKIP 7 | PASS 27 ] + + ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ + ... + 10. └─base::Map(...) + 11. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE) + 12. └─thematic (local) ``(dots[[1L]][[1L]], dots[[2L]][[1L]]) + 13. ├─ggplot2::update_geom_defaults(...) + 14. │ └─ggplot2:::update_defaults(geom, "Geom", new, env = parent.frame()) + 15. └─thematic:::adjust_color(user_default$colour, bg, fg, accent) + + [ FAIL 9 | WARN 1 | SKIP 7 | PASS 27 ] + Error: Test failures + Execution halted + ``` + +# tidycat + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/guyabel/tidycat +* Source code: https://github.com/cran/tidycat +* Date/Publication: 2021-08-02 04:20:01 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "tidycat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidycat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tidy_categorical + > ### Title: Expand broom::tidy() Outputs for Categorical Parameter Estimates + > ### Aliases: tidy_categorical + > + > ### ** Examples + > + > # strip ordering in factors (currently ordered factor not supported) + ... + > ggplot(data = d0, + + mapping = aes(x = level, colour = reference, + + y = estimate, ymin = conf.low, ymax = conf.high)) + + + facet_row(facets = vars(variable), scales = "free_x", space = "free") + + + geom_hline(yintercept = 0, linetype = "dashed") + + + geom_pointrange() + + + theme(axis.text.x = element_text(angle = 45, hjust = 1)) + Error in space$x : $ operator is invalid for atomic vectors + Calls: ... -> draw_panels -> -> init_gtable + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘tidyr’ + All declared Imports should be used. + ``` + +# tidyCDISC + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/Biogen-Inc/tidyCDISC +* Source code: https://github.com/cran/tidyCDISC +* Date/Publication: 2023-03-16 14:20:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "tidyCDISC")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyCDISC) + > library(shinyjs) + + Attaching package: 'shinyjs' + + ... + 6. ├─plotly::config(...) + 7. │ └─plotly:::modify_list(p$x$config, args) + 8. │ ├─utils::modifyList(x %||% list(), y %||% list(), ...) + 9. │ │ └─base::stopifnot(is.list(x), is.list(val)) + 10. │ └─x %||% list() + 11. └─plotly::layout(...) + + [ FAIL 1 | WARN 1 | SKIP 15 | PASS 91 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 2.0Mb + doc 1.8Mb + ``` + +# tidydr + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/YuLab-SMU/tidydr +* Source code: https://github.com/cran/tidydr +* Date/Publication: 2023-03-08 09:20:02 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "tidydr")` for more info + +
+ +## Newly broken + +* checking whether package ‘tidydr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'len0_null' not found +Error: unable to load R code in package ‘tidydr’ +Execution halted +ERROR: lazy loading failed for package ‘tidydr’ +* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ + + +``` +### CRAN + +``` +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tidydr) + + +``` +# tidyposterior + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/tidymodels/tidyposterior +* Source code: https://github.com/cran/tidyposterior +* Date/Publication: 2023-10-11 18:50:02 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "tidyposterior")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyposterior) + > + > test_check("tidyposterior") + + Attaching package: 'rsample' + + ... + `expected`: ".upper" + ── Failure ('test_perf_mod.R:288:3'): workflow sets ──────────────────────────── + as.character(p_rope$labels$colour) (`actual`) not equal to "workflow" (`expected`). + + `actual`: + `expected`: "workflow" + + [ FAIL 12 | WARN 32 | SKIP 5 | PASS 116 ] + Error: Test failures + Execution halted + ``` + +# timetk + +
+ +* Version: 2.9.0 +* GitHub: https://github.com/business-science/timetk +* Source code: https://github.com/cran/timetk +* Date/Publication: 2023-10-31 22:30:02 UTC +* Number of recursive dependencies: 205 + +Run `revdepcheck::cloud_details(, "timetk")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 7. └─timetk:::plot_time_series.grouped_df(...) + 8. ├─timetk::plot_time_series(...) + 9. └─timetk:::plot_time_series.data.frame(...) + 10. ├─plotly::ggplotly(g, dynamicTicks = TRUE) + 11. └─plotly:::ggplotly.ggplot(g, dynamicTicks = TRUE) + 12. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 406 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2750 marked UTF-8 strings + ``` + +# track2KBA + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/BirdLifeInternational/track2kba +* Source code: https://github.com/cran/track2KBA +* Date/Publication: 2024-07-01 10:40:07 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "track2KBA")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("track2KBA") + + } + + test_estSpaceUse.R............ 0 tests + Attaching package: 'lubridate' + + ... + with cells of 0.411 square km + + test_mapKDE.R................. 1 tests OK + test_mapKDE.R................. 2 tests OK Error in if (msg != "") { : the condition has length > 1 + Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun + In addition: Warning message: + In Matching::ks.boot(WI, BW, alternative = "two.sided", nboots = iterations) : + For publication quality p-values it is recommended that 'nboots' + be set equal to at least 500 (preferably 1000) + Execution halted + ``` + +# tradeoffaucdim + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/luisgarcez11/tradeoffaucdim +* Source code: https://github.com/cran/tradeoffaucdim +* Date/Publication: 2025-05-02 09:40:02 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "tradeoffaucdim")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tradeoffaucdim-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare_test + > ### Title: Compare test + > ### Aliases: compare_test + > + > ### ** Examples + > + > compare_test(obj5) + ... + 11. │ │ └─base::withCallingHandlers(...) + 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) + 13. │ └─l$layer_data(plot$data) + 14. │ └─ggplot2::layer_data(..., self = self) + 15. └─base::.handleSimpleError(...) + 16. └─rlang (local) h(simpleError(msg, call)) + 17. └─handlers[[1L]](cnd) + 18. └─cli::cli_abort(...) + 19. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘speedglm’ + All declared Imports should be used. + ``` + +# trelliscopejs + +
+ +* Version: 0.2.6 +* GitHub: https://github.com/hafen/trelliscopejs +* Source code: https://github.com/cran/trelliscopejs +* Date/Publication: 2021-02-01 08:00:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "trelliscopejs")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(trelliscopejs) + > + > test_check("trelliscopejs") + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 4. └─base::lapply(...) + 5. └─trelliscopejs (local) FUN(X[[i]], ...) + 6. ├─base::do.call(plotly::ggplotly, c(list(p = q), plotly_args)) + 7. ├─plotly (local) ``(p = ``) + 8. └─plotly:::ggplotly.ggplot(p = ``) + 9. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# tricolore + +
+ +* Version: 1.2.4 +* GitHub: https://github.com/jschoeley/tricolore +* Source code: https://github.com/cran/tricolore +* Date/Publication: 2024-05-15 15:00:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "tricolore")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tricolore-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ColorKeySextant + > ### Title: Sextant Scheme Legend + > ### Aliases: ColorKeySextant + > ### Keywords: internal + > + > ### ** Examples + > + > # NOTE: only intended for internal use and not part of the API + > tricolore:::ColorKeySextant(center = prop.table(runif(3)), + + values = c('#01A0C6', '#B8B3D8', '#F11D8C', + + '#FFB3B3', '#FFFF00', '#B3DCC3'), + + label_as = 'pct_diff', show_center = TRUE) + Error in validate_theme(theme) : could not find function "validate_theme" + Calls: ... ggplot_build.ggplot -> layers_add_or_remove_mask -> + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘choropleth_maps_with_tricolore.Rmd’ using rmarkdown + + Quitting from choropleth_maps_with_tricolore.Rmd:60-72 [unnamed-chunk-4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `validate_theme()`: + ! could not find function "validate_theme" + --- + Backtrace: + ... + + Error: processing vignette 'choropleth_maps_with_tricolore.Rmd' failed with diagnostics: + could not find function "validate_theme" + --- failed re-building ‘choropleth_maps_with_tricolore.Rmd’ + + SUMMARY: processing the following file failed: + ‘choropleth_maps_with_tricolore.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking whether package ‘tricolore’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings + ``` + +# twowaytests + +
+ +* Version: 1.5 +* GitHub: NA +* Source code: https://github.com/cran/twowaytests +* Date/Publication: 2024-11-11 14:20:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "twowaytests")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘twowaytests-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gplotTwoWay + > ### Title: Box-and-Whisker, Violin Plots and Error Bars for Two-Way Layout + > ### Aliases: gplotTwoWay + > ### Keywords: functions + > + > ### ** Examples + > + ... + 20. └─vctrs (local) ``() + 21. └─vctrs::vec_default_ptype2(...) + 22. ├─base::withRestarts(...) + 23. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 24. │ └─base (local) doWithOneRestart(return(expr), restart) + 25. └─vctrs::stop_incompatible_type(...) + 26. └─vctrs:::stop_incompatible(...) + 27. └─vctrs:::stop_vctrs(...) + 28. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# umiAnalyzer + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/sfilges/umiAnalyzer +* Source code: https://github.com/cran/umiAnalyzer +* Date/Publication: 2021-11-25 08:40:02 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "umiAnalyzer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘umiAnalyzer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AmpliconPlot + > ### Title: Generate Amplicon plots + > ### Aliases: AmpliconPlot + > + > ### ** Examples + > + > library(umiAnalyzer) + ... + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the umiAnalyzer package. + Please report the issue at . + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the umiAnalyzer package. + Please report the issue at . + Error in pm[[2]] : subscript out of bounds + Calls: AmpliconPlot -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# usmap + +
+ +* Version: 0.7.1 +* GitHub: https://github.com/pdil/usmap +* Source code: https://github.com/cran/usmap +* Date/Publication: 2024-03-21 04:20:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "usmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘usmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: .east_north_central + > ### Title: East North Central census division + > ### Aliases: .east_north_central + > ### Keywords: datasets + > + > ### ** Examples + > + > plot_usmap(include = .east_north_central, labels = TRUE) + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: plot_usmap ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + • data/statepov.svg + • plot/arizona-county-map-with-labels-and-fill.svg + • plot/example-data-state-map-with-custom-linewidth.svg + • plot/new-england-state-map-with-labels-excluding-maine.svg + • plot/southeastern-states-map-with-labels.svg + • plot/state-map-with-labels.svg + • plot/state-map-with-major-rivers.svg + • plot/state-population-map-with-blue-outlines.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘usmap1.Rmd’ using rmarkdown + + Quitting from usmap1.Rmd:25-27 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `process_cpl_read_ogr()`: + ! package tibble not available: install first? + --- + Backtrace: + ... + + Error: processing vignette 'usmap3.Rmd' failed with diagnostics: + package tibble not available: install first? + --- failed re-building ‘usmap3.Rmd’ + + SUMMARY: processing the following files failed: + ‘usmap1.Rmd’ ‘usmap2.Rmd’ ‘usmap3.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Unexported objects imported by ':::' calls: + ‘usmapdata:::alaska_bbox’ ‘usmapdata:::ea_crs’ + ‘usmapdata:::hawaii_bbox’ ‘usmapdata:::transform_alaska’ + ‘usmapdata:::transform_hawaii’ + See the note in ?`:::` about the use of this operator. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 17 marked UTF-8 strings + ``` + +# vaccineff + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/epiverse-trace/vaccineff +* Source code: https://github.com/cran/vaccineff +* Date/Publication: 2024-11-29 09:30:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "vaccineff")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + `expected` is a character vector ('coverage * max(dose_plot)') + ── Failure ('test-utils_coverage.R:50:3'): `plot_coverage`: cumulative plot ──── + plt$labels$y (`actual`) not identical to "coverage * max(dose_plot)" (`expected`). + + `actual` is NULL + `expected` is a character vector ('coverage * max(dose_plot)') + + [ FAIL 2 | WARN 0 | SKIP 6 | PASS 100 ] + Error: Test failures + Execution halted + ``` + +# valr + +
+ +* Version: 0.8.3 +* GitHub: https://github.com/rnabioco/valr +* Source code: https://github.com/cran/valr +* Date/Publication: 2025-01-11 15:40:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "valr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_glyph.r:13:3'): glyph labels are applied ───────────────────── + res$labels$label (`actual`) not equal to "id" (`expected`). + + `actual` is NULL + `expected` is a character vector ('id') + + [ FAIL 1 | WARN 0 | SKIP 4 | PASS 479 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 15.1Mb + sub-directories of 1Mb or more: + libs 13.9Mb + ``` + +# vangogh + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/cherylisabella/vangogh +* Source code: https://github.com/cran/vangogh +* Date/Publication: 2022-05-27 08:00:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "vangogh")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vangogh.Rmd’ using rmarkdown + ``` + +# vDiveR + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/vDiveR +* Date/Publication: 2024-11-22 08:20:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "vDiveR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vDiveR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_conservation_level + > ### Title: Conservation Levels Distribution Plot + > ### Aliases: plot_conservation_level + > + > ### ** Examples + > + > plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15) + ... + 29. │ └─base::lapply(...) + 30. │ └─ggplot2 (local) FUN(X[[i]], ...) + 31. │ └─ggplot2 (local) apply_fun(cur_data) + 32. │ └─ggplot2 (local) fun(x, ...) + 33. └─base::.handleSimpleError(...) + 34. └─rlang (local) h(simpleError(msg, call)) + 35. └─handlers[[1L]](cnd) + 36. └─cli::cli_abort(...) + 37. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘maps’ + All declared Imports should be used. + ``` + +# vecmatch + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/Polymerase3/vecmatch +* Source code: https://github.com/cran/vecmatch +* Date/Publication: 2025-04-24 12:20:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "vecmatch")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vecmatch-Ex.R’ failed + The error most likely occurred in: + + > ### Name: estimate_gps + > ### Title: Calculate treatment allocation probabilities + > ### Aliases: estimate_gps + > + > ### ** Examples + > + > + ... + 19. └─vctrs (local) ``() + 20. └─vctrs::vec_default_ptype2(...) + 21. ├─base::withRestarts(...) + 22. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 23. │ └─base (local) doWithOneRestart(return(expr), restart) + 24. └─vctrs::stop_incompatible_type(...) + 25. └─vctrs:::stop_incompatible(...) + 26. └─vctrs:::stop_vctrs(...) + 27. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + 33. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 34. │ └─base (local) doWithOneRestart(return(expr), restart) + 35. └─vctrs::stop_incompatible_type(...) + 36. └─vctrs:::stop_incompatible(...) + 37. └─vctrs:::stop_vctrs(...) + 38. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + + [ FAIL 10 | WARN 0 | SKIP 0 | PASS 207 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘vecmatch.Rmd’ using rmarkdown + + Quitting from vecmatch.Rmd:50-63 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'vecmatch.Rmd' failed with diagnostics: + Can't combine `..1` and `..2` . + --- failed re-building ‘vecmatch.Rmd’ + + SUMMARY: processing the following file failed: + ‘vecmatch.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘MatchIt’ + ``` + +# vivaldi + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/GreshamLab/vivaldi +* Source code: https://github.com/cran/vivaldi +* Date/Publication: 2023-03-21 20:10:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "vivaldi")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vivaldi-Ex.R’ failed + The error most likely occurred in: + + > ### Name: snv_location + > ### Title: snv_location + > ### Aliases: snv_location + > + > ### ** Examples + > + > # Example 1: + ... + 6 m2 PB1 234 G A minor 0.010 0.990 + 7 m2 PB1 266 G A minor 0.022 0.978 + 8 m2 PB2 199 A G minor 0.043 0.957 + 9 m2 PB2 88 G A major 0.055 0.945 + 10 m2 PB2 180 C T minor 0.011 0.989 + > + > snv_location(df) + Error in pm[[2]] : subscript out of bounds + Calls: snv_location -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-snv_location.R:13:3'): expect output ───────────────────────── + Expected `snv_location(df)` to run without any errors. + i Actually got a with text: + subscript out of bounds + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 28 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.8Mb + sub-directories of 1Mb or more: + doc 5.4Mb + extdata 1.1Mb + ``` + +# voluModel + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/hannahlowens/voluModel +* Source code: https://github.com/cran/voluModel +* Date/Publication: 2024-08-20 22:50:01 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "voluModel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘voluModel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pointCompMap + > ### Title: Comparative point mapping + > ### Aliases: pointCompMap + > ### Keywords: plotting + > + > ### ** Examples + > + ... + 6. └─ggplot2 (local) setup(..., self = self) + 7. └─self$coord$setup_params(data) + 8. └─ggplot2 (local) setup_params(..., self = self) + 9. └─ggproto_parent(Coord, self)$setup_params(data) + 10. └─ggplot2 (local) setup_params(..., self = self) + 11. └─ggplot2:::parse_coord_expand(expand = self$expand %||% TRUE) + 12. └─ggplot2:::check_logical(expand) + 13. └─ggplot2:::stop_input_type(...) + 14. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a_Introduction.Rmd’ using rmarkdown + + Quitting from a_Introduction.Rmd:43-58 [show points] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'a_Introduction.Rmd' failed with diagnostics: + `expand` must be a logical vector, not the number 0.05. + --- failed re-building ‘a_Introduction.Rmd’ + + --- re-building ‘b_RasterProcessing.Rmd’ using rmarkdown + ``` + +# vvshiny + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/vvshiny +* Date/Publication: 2023-07-19 15:30:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "vvshiny")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 1. ├─vvshiny::ggplotly_with_legend(p, color = "grp", mapping_table = list(grp = "Group")) at test-ggplotly_with_legend.R:15:3 + 2. │ ├─plotly::ggplotly(plot) %>% ... + 3. │ ├─plotly::ggplotly(plot) + 4. │ └─plotly:::ggplotly.ggplot(plot) + 5. │ └─plotly::gg2list(...) + 6. └─plotly::layout(...) + + [ FAIL 1 | WARN 4 | SKIP 0 | PASS 60 ] + Error: Test failures + Execution halted + ``` + +# wilson + +
+ +* Version: 2.4.2 +* GitHub: https://github.com/loosolab/wilson +* Source code: https://github.com/cran/wilson +* Date/Publication: 2021-04-19 09:40:02 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "wilson")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(wilson) + + Attaching package: 'wilson' + + The following object is masked from 'package:stats': + + ... + Backtrace: + ▆ + 1. └─wilson::create_geneview(...) at test-interactive-plots.R:21:3 + 2. ├─plotly::ggplotly(...) + 3. └─plotly:::ggplotly.ggplot(...) + 4. └─plotly::gg2list(...) + + [ FAIL 3 | WARN 11 | SKIP 1 | PASS 74 ] + Error: Test failures + Execution halted + ``` + +# wpa + +
+ +* Version: 1.9.1 +* GitHub: https://github.com/microsoft/wpa +* Source code: https://github.com/cran/wpa +* Date/Publication: 2024-06-06 13:20:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "wpa")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 3. │ └─plot_data_long %>% ... + 4. └─wpa::plot_hourly_pat(...) + 5. └─ggplot2::scale_fill_continuous(...) + 6. └─ggplot2:::scale_backward_compatibility(...) + 7. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 8. └─rlang::abort(...) + + [ FAIL 1 | WARN 250 | SKIP 0 | PASS 9 ] + Error: Test failures + Execution halted + ``` + +# xaringanthemer + +
+ +* Version: 0.4.3 +* GitHub: https://github.com/gadenbuie/xaringanthemer +* Source code: https://github.com/cran/xaringanthemer +* Date/Publication: 2024-09-15 14:00:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "xaringanthemer")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggplot2-themes.Rmd’ using rmarkdown + ``` + +# xpose + +
+ +* Version: 0.4.19 +* GitHub: https://github.com/UUPharmacometrics/xpose +* Source code: https://github.com/cran/xpose +* Date/Publication: 2025-01-07 20:00:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "xpose")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘xpose-Ex.R’ failed + The error most likely occurred in: + + > ### Name: amt_vs_idv + > ### Title: Compartment kinetics + > ### Aliases: amt_vs_idv + > + > ### ** Examples + > + > amt_vs_idv(xpdb_ex_pk, nrow = 2, ncol = 1) + Using data from $prob no.1 + Tidying data by ID, SEX, MED1, MED2, AMT ... and 20 more variables + Error in label_variable(labels, multi_line = multi_line) : + could not find function "label_variable" + Calls: ... list2 -> labeller -> lapply -> FUN -> .default -> x + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(xpose) + Loading required package: ggplot2 + + Attaching package: 'xpose' + + The following object is masked from 'package:stats': + ... + 26. │ └─rlang::list2(...) + 27. └─ggplot2::labeller(labels) + 28. └─base::lapply(...) + 29. └─ggplot2 (local) FUN(X[[i]], ...) + 30. └─ggplot2 (local) .default(labels[label]) + 31. └─ggplot2 (local) x(labels) + + [ FAIL 3 | WARN 1 | SKIP 7 | PASS 517 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘access_xpdb_data.Rmd’ using rmarkdown + --- finished re-building ‘access_xpdb_data.Rmd’ + + --- re-building ‘customize_plots.Rmd’ using rmarkdown + ``` + +# xpose.xtras + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/jprybylski/xpose.xtras +* Source code: https://github.com/cran/xpose.xtras +* Date/Publication: 2024-11-21 17:20:02 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "xpose.xtras")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘xpose.xtras-Ex.R’ failed + The error most likely occurred in: + + > ### Name: grab_xpose_plot + > ### Title: Grab processed 'xpose_plot' + > ### Aliases: grab_xpose_plot + > + > ### ** Examples + > + > + ... + + eta_vs_catcov(etavar = ETA1) %>% + + grab_xpose_plot() + Using data from $prob no.1 + Removing duplicated rows based on: ID + Tidying data by ID, DOSE, AMT, SS, II ... and 23 more variables + Warning: attributes are not identical across measure variables; they will be dropped + Error in label_variable(labels, multi_line = multi_line) : + could not find function "label_variable" + Calls: %>% ... list2 -> labeller -> lapply -> FUN -> .default -> x + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 21. └─scales[[i]][[method]](vec_slice(data[[var]], scale_index[[i]])) + 22. └─ggplot2 (local) train(..., self = self) + 23. └─self$range$train(x, call = self$call) + 24. └─scales::train_continuous(x, self$range, call = call) + 25. └─cli::cli_abort(...) + 26. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 6 | PASS 653 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a01-the-xp_xtra-object.Rmd’ using rmarkdown + + Quitting from a01-the-xp_xtra-object.Rmd:94-96 [plot_cont] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `label_variable()`: + ! could not find function "label_variable" + --- + Backtrace: + ... + 62. └─ggplot2 (local) FUN(X[[i]], ...) + 63. └─ggplot2 (local) .default(labels[label]) + 64. └─ggplot2 (local) x(labels) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'a01-the-xp_xtra-object.Rmd' failed with diagnostics: + could not find function "label_variable" + --- failed re-building ‘a01-the-xp_xtra-object.Rmd’ + + --- re-building ‘a02-xpose-sets.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.9Mb + sub-directories of 1Mb or more: + data 2.5Mb + doc 2.4Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings + ``` + +# xray + +
+ +* Version: 0.2 +* GitHub: https://github.com/sicarul/xray +* Source code: https://github.com/cran/xray +* Date/Publication: 2017-12-08 05:15:59 UTC +* Number of recursive dependencies: 35 + +Run `revdepcheck::cloud_details(, "xray")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘xray-Ex.R’ failed + The error most likely occurred in: + + > ### Name: distributions + > ### Title: Analyze each variable and generate a histogram describing it's + > ### distribution. + > ### Aliases: distributions + > + > ### ** Examples + > + > library(xray) + > distributions(mtcars) + ================================================================================Error in { : + task 1 failed - "`type` must be a character vector or list of character vectors, not `NULL`." + Calls: distributions -> %do% -> + Execution halted + ``` +