The Biorefinery Simulation and Techno-Economic Analysis Modules; Life Cycle Assessment; Chemical Process Simulation Under Uncertainty

Mechanistic models in fermentation

Deep hybrid modeling of bioreactor cell culture data using Long Short-Term Memory (LSTM) networks combined with first principles equations

Python package for processing of DASware raw data exports.

sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems

Material for standard text book model of fedbatch cultivation.

Material for model of fedbatch cultivation of CHO cells.

Material for model of aerated fedbatch cultivation of yeast.

Code behind 'Data Driven Modelling and Optimisation for Sustainable Bio-Production' as well as a related simple kinetic model using odes

Material for standard text book model of batch cultivation where substrate measurement noise added and end of batch detected

Material for standard text book model of perfusion cultivation.

Material for standard text book model of batch cultivation where model is calibrated using time series data for substrate and cell concentration.

Material for standard text book model of batch cultivation.

Repository referring to the theoretical material of CABBIO BR03. (under construction)

R Scripts for quantification of microbial robustness from high-throughput screenings

Notebooks with examples to be presented at Modelica 15 in October 2023

Material for model of batch cultivation of yeast and exploring constraint-based view of metabolism and growth.

Clonalyzer: toolkit for analyzing growth, yields, and rates in mammalian cell cultures. Designed for CHO fed-batch but adaptable to any time-series data.

A Fed-Batch Solver

Documentation