diff --git a/docs/documentation/how-to.md b/docs/documentation/how-to.md index d09fe656..e15754f8 100644 --- a/docs/documentation/how-to.md +++ b/docs/documentation/how-to.md @@ -126,11 +126,11 @@ authors = [] [tool.poetry.dependencies] python = "^3.9" numpy = "^1.23.0" -ipykernel = "^6.15.0" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] # build systems for dependencies hatchling = "^1.3.1" +ipykernel = "^6.15.0" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/examples/python/native/test.py b/examples/python/native/test.py index 952794b7..cae37c02 100644 --- a/examples/python/native/test.py +++ b/examples/python/native/test.py @@ -12,7 +12,7 @@ def test_nb(tb): assert sp_result == "[ 0.5 2.5 6.5 12.5]" mpl_result = tb.cell_output_text(3) - assert mpl_result == "(0.122312, 0.633153, 0.530398, 1.0)" + assert mpl_result == "(np.float64(0.122312), np.float64(0.633153), np.float64(0.530398), np.float64(1.0))" if __name__ == '__main__': test_nb() diff --git a/examples/python/science/test.py b/examples/python/science/test.py index dee85abe..c1a83df5 100644 --- a/examples/python/science/test.py +++ b/examples/python/science/test.py @@ -12,7 +12,7 @@ def test_nb(tb): assert sp_result == "[ 0.5 2.5 6.5 12.5]" mpl_result = tb.cell_output_text(3) - assert mpl_result == "(0.122312, 0.633153, 0.530398, 1.0)" + assert mpl_result == "(np.float64(0.122312), np.float64(0.633153), np.float64(0.530398), np.float64(1.0))" if __name__ == '__main__': test_nb() diff --git a/flake.lock b/flake.lock index dcc0da77..95a71dcb 100644 --- a/flake.lock +++ b/flake.lock @@ -3,11 +3,11 @@ "flake-compat": { "flake": false, "locked": { - "lastModified": 1732722421, - "narHash": "sha256-HRJ/18p+WoXpWJkcdsk9St5ZiukCqSDgbOGFa8Okehg=", + "lastModified": 1733328505, + "narHash": "sha256-NeCCThCEP3eCl2l/+27kNNK7QrwZB1IJCrXfrbv5oqU=", "owner": "edolstra", "repo": "flake-compat", - "rev": "9ed2ac151eada2306ca8c418ebd97807bb08f6ac", + "rev": "ff81ac966bb2cae68946d5ed5fc4994f96d0ffec", "type": "github" }, "original": { @@ -81,11 +81,11 @@ "nixpkgs": "nixpkgs" }, "locked": { - "lastModified": 1732525669, - "narHash": "sha256-JTjkZOoDonda/EbIWXxPEr3hBVkVu2388XAxMWduKJQ=", + "lastModified": 1737712849, + "narHash": "sha256-m58D1Oe6oWbJ7E9xzEf9TsUx5wXIx4c2tWnxKwIFGEo=", "owner": "haskell", "repo": "haskell-language-server", - "rev": "fea01358646a767980eb8645f7ef8878d83725fe", + "rev": "d75400d7a3416a71b900e54177124ac1183a340b", "type": "github" }, "original": { @@ -109,11 +109,11 @@ ] }, "locked": { - "lastModified": 1733054907, - "narHash": "sha256-vWd8sqQ2fBdlxqdpWAayS/PPeFf8BSVe1IRbqGFjwlI=", + "lastModified": 1739083722, + "narHash": "sha256-zoBwXJ2KXEZBlCfj0oZ3m09Dl2MD2Pk5QegHFx4sSpU=", "owner": "ihaskell", "repo": "ihaskell", - "rev": "d896621edbf032a86fa85723911b0e75852402f2", + "rev": "29d1622d1ecf28eaf97e3020d2fd7aebd3de74b0", "type": "github" }, "original": { @@ -216,11 +216,11 @@ }, "nixpkgs-master": { "locked": { - "lastModified": 1733152711, - "narHash": "sha256-bptm7zLlH9Q8Hxi0qBFhinYpKVkhrm0gGj9TARdT8z4=", + "lastModified": 1739473215, + "narHash": "sha256-ld2LPGdk+IMzpg47jUzHNvqpCo8zSwK1iCdDau2ovOc=", "owner": "nixos", "repo": "nixpkgs", - "rev": "88196cc0760e55b11c71f80df5f14bf3f836563c", + "rev": "848d5cf061270519802a8ed76a9d9727ce235d10", "type": "github" }, "original": { @@ -232,11 +232,11 @@ }, "nixpkgs-stable": { "locked": { - "lastModified": 1732981179, - "narHash": "sha256-F7thesZPvAMSwjRu0K8uFshTk3ZZSNAsXTIFvXBT+34=", + "lastModified": 1739357830, + "narHash": "sha256-9xim3nJJUFbVbJCz48UP4fGRStVW5nv4VdbimbKxJ3I=", "owner": "nixos", "repo": "nixpkgs", - "rev": "62c435d93bf046a5396f3016472e8f7c8e2aed65", + "rev": "0ff09db9d034a04acd4e8908820ba0b410d7a33a", "type": "github" }, "original": { @@ -246,29 +246,13 @@ "type": "github" } }, - "nixpkgs-stable_2": { - "locked": { - "lastModified": 1730741070, - "narHash": "sha256-edm8WG19kWozJ/GqyYx2VjW99EdhjKwbY3ZwdlPAAlo=", - "owner": "NixOS", - "repo": "nixpkgs", - "rev": "d063c1dd113c91ab27959ba540c0d9753409edf3", - "type": "github" - }, - "original": { - "owner": "NixOS", - "ref": "nixos-24.05", - "repo": "nixpkgs", - "type": "github" - } - }, "nixpkgs_2": { "locked": { - "lastModified": 1733064805, - "narHash": "sha256-7NbtSLfZO0q7MXPl5hzA0sbVJt6pWxxtGWbaVUDDmjs=", + "lastModified": 1739419412, + "narHash": "sha256-NCWZQg4DbYVFWg+MOFrxWRaVsLA7yvRWAf6o0xPR1hI=", "owner": "nixos", "repo": "nixpkgs", - "rev": "31d66ae40417bb13765b0ad75dd200400e98de84", + "rev": "2d55b4c1531187926c2a423f6940b3b1301399b5", "type": "github" }, "original": { @@ -309,11 +293,11 @@ "opam2json": "opam2json" }, "locked": { - "lastModified": 1732617437, - "narHash": "sha256-jj25fziYrES8Ix6HkfSiLzrN6MZjiwlHUxFSIuLRjgE=", + "lastModified": 1737622850, + "narHash": "sha256-50F6VpvLR0iRq43BDDtSP8UpqItH5njHNRnzFTuFS8Q=", "owner": "tweag", "repo": "opam-nix", - "rev": "ea8b9cb81fe94e1fc45c6376fcff15f17319c445", + "rev": "80bc0abfbcf683441eba7bbb37d5794ccc32956b", "type": "github" }, "original": { @@ -341,11 +325,11 @@ "opam-repository": { "flake": false, "locked": { - "lastModified": 1732612513, - "narHash": "sha256-kju4NWEQo4xTxnKeBIsmqnyxIcCg6sNZYJ1FmG/gCDw=", + "lastModified": 1737555577, + "narHash": "sha256-tyFeSul8JgoPa2X5G+CHz4PgJSbt7TUAGbeAENTmTZQ=", "owner": "ocaml", "repo": "opam-repository", - "rev": "3d52b66b04788999a23f22f0d59c2dfc831c4f32", + "rev": "a12dee6bc474c1adf530d0db26271d7b002230ff", "type": "github" }, "original": { @@ -388,11 +372,11 @@ "treefmt-nix": [] }, "locked": { - "lastModified": 1731205797, - "narHash": "sha256-F7N1mxH1VrkVNHR3JGNMRvp9+98KYO4b832KS8Gl2xI=", + "lastModified": 1738741221, + "narHash": "sha256-UiTOA89yQV5YNlO1ZAp4IqJUGWOnTyBC83netvt8rQE=", "owner": "nix-community", "repo": "poetry2nix", - "rev": "f554d27c1544d9c56e5f1f8e2b8aff399803674e", + "rev": "be1fe795035d3d36359ca9135b26dcc5321b31fb", "type": "github" }, "original": { @@ -407,15 +391,14 @@ "gitignore": "gitignore", "nixpkgs": [ "nixpkgs" - ], - "nixpkgs-stable": "nixpkgs-stable_2" + ] }, "locked": { - "lastModified": 1732021966, - "narHash": "sha256-mnTbjpdqF0luOkou8ZFi2asa1N3AA2CchR/RqCNmsGE=", + "lastModified": 1737465171, + "narHash": "sha256-R10v2hoJRLq8jcL4syVFag7nIGE7m13qO48wRIukWNg=", "owner": "cachix", "repo": "pre-commit-hooks.nix", - "rev": "3308484d1a443fc5bc92012435d79e80458fe43c", + "rev": "9364dc02281ce2d37a1f55b6e51f7c0f65a75f17", "type": "github" }, "original": { @@ -463,11 +446,11 @@ ] }, "locked": { - "lastModified": 1733106880, - "narHash": "sha256-aJmAIjZfWfPSWSExwrYBLRgXVvgF5LP1vaeUGOOIQ98=", + "lastModified": 1739413688, + "narHash": "sha256-57OAXXYhOibG7Rqhhr4ecI1H8mtDJB2uj0T8rbQVGLY=", "owner": "oxalica", "repo": "rust-overlay", - "rev": "e66c0d43abf5bdefb664c3583ca8994983c332ae", + "rev": "675a6427d505f140dab8c56379afb66d4f55800b", "type": "github" }, "original": { @@ -501,8 +484,9 @@ "type": "github" }, "original": { - "id": "systems", - "type": "indirect" + "owner": "nix-systems", + "repo": "default", + "type": "github" } } }, diff --git a/lib/overrides.nix b/lib/overrides.nix index 0c945f63..24fcf4a2 100644 --- a/lib/overrides.nix +++ b/lib/overrides.nix @@ -55,10 +55,10 @@ pkgs: let ''; }); rpds-py = prev.rpds-py.overridePythonAttrs (old: { - cargoDeps = pkgs.rustPlatform.fetchCargoTarball { + cargoDeps = pkgs.rustPlatform.fetchCargoVendor { inherit (old) src; name = "${old.pname}-${old.version}"; - hash = "sha256-VOmMNEdKHrPKJzs+D735Y52y47MubPwLlfkvB7Glh14="; + hash = "sha256-2skrDC80g0EKvTEeBI4t4LD7ZXb6jp2Gw+owKFrkZzc="; }; }); rfc3986-validator = prev.rfc3986-validator.overridePythonAttrs (old: { diff --git a/modules/kernels/bash/poetry.lock b/modules/kernels/bash/poetry.lock index 13e22b52..60f3883c 100644 --- a/modules/kernels/bash/poetry.lock +++ b/modules/kernels/bash/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.0.1 and should not be changed by hand. [[package]] name = "appnope" @@ -6,6 +6,8 @@ version = "0.1.4" description = "Disable App Nap on macOS >= 10.9" optional = false python-versions = ">=3.6" +groups = ["main", "dev"] +markers = "platform_system == \"Darwin\"" files = [ {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"}, {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"}, @@ -13,34 +15,34 @@ files = [ [[package]] name = "asttokens" -version = "2.4.1" +version = "3.0.0" description = "Annotate AST trees with source code positions" optional = false -python-versions = "*" +python-versions = ">=3.8" +groups = ["main", "dev"] files = [ - {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"}, - {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"}, + 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description = "Extract data from python stack frames and tracebacks for informative displays" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"}, {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"}, @@ -710,6 +745,7 @@ version = "6.4.2" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "tornado-6.4.2-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:e828cce1123e9e44ae2a50a9de3055497ab1d0aeb440c5ac23064d9e44880da1"}, {file = "tornado-6.4.2-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:072ce12ada169c5b00b7d92a99ba089447ccc993ea2143c9ede887e0937aa803"}, @@ -730,6 +766,7 @@ version = "5.14.3" description = "Traitlets Python configuration system" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"}, {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"}, @@ -745,6 +782,8 @@ version = "4.12.2" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" +groups = ["dev"] +markers = "python_version < \"3.12\"" files = [ {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"}, {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, @@ -756,12 +795,13 @@ version = "0.2.13" description = "Measures the displayed width of unicode strings in a terminal" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, ] [metadata] -lock-version = "2.0" +lock-version = "2.1" python-versions = "^3.11" content-hash = "3f56692bb7c3696e0df4b619169db69d9fb1bf9614da19e487024eff496f7347" diff --git a/modules/kernels/c/pyproject.toml b/modules/kernels/c/pyproject.toml index aed94d0f..845bd253 100644 --- a/modules/kernels/c/pyproject.toml +++ b/modules/kernels/c/pyproject.toml @@ -7,7 +7,7 @@ authors = [] [tool.poetry.dependencies] python = "^3.11" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] ipykernel = "*" jupyter_c_kernel = "*" diff --git a/modules/kernels/elm/overrides.nix b/modules/kernels/elm/overrides.nix index 8faf9899..73f3d4e1 100644 --- a/modules/kernels/elm/overrides.nix +++ b/modules/kernels/elm/overrides.nix @@ -24,10 +24,10 @@ pkgs: let pypkgs-build-requirements) // { rpds-py = prev.rpds-py.overridePythonAttrs (old: { - cargoDeps = pkgs.rustPlatform.fetchCargoTarball { + cargoDeps = pkgs.rustPlatform.fetchCargoVendor { inherit (old) src; name = "${old.pname}-${old.version}"; - hash = "sha256-VOmMNEdKHrPKJzs+D735Y52y47MubPwLlfkvB7Glh14="; + hash = "sha256-2skrDC80g0EKvTEeBI4t4LD7ZXb6jp2Gw+owKFrkZzc="; }; }); }); diff --git a/modules/kernels/elm/poetry.lock b/modules/kernels/elm/poetry.lock index 72f90c64..cd5857d8 100644 --- a/modules/kernels/elm/poetry.lock +++ b/modules/kernels/elm/poetry.lock @@ -1,23 +1,25 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.0.1 and should not be changed by hand. [[package]] name = "anyio" -version = "4.6.2.post1" +version = "4.8.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ - {file = "anyio-4.6.2.post1-py3-none-any.whl", hash = "sha256:6d170c36fba3bdd840c73d3868c1e777e33676a69c3a72cf0a0d5d6d8009b61d"}, - {file = "anyio-4.6.2.post1.tar.gz", hash = "sha256:4c8bc31ccdb51c7f7bd251f51c609e038d63e34219b44aa86e47576389880b4c"}, + {file = "anyio-4.8.0-py3-none-any.whl", hash = "sha256:b5011f270ab5eb0abf13385f851315585cc37ef330dd88e27ec3d34d651fd47a"}, + {file = "anyio-4.8.0.tar.gz", hash = "sha256:1d9fe889df5212298c0c0723fa20479d1b94883a2df44bd3897aa91083316f7a"}, ] [package.dependencies] idna = ">=2.8" sniffio = ">=1.1" +typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""} [package.extras] -doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"] +doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx_rtd_theme"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21)"] trio = ["trio (>=0.26.1)"] [[package]] @@ -26,6 +28,8 @@ version = "0.1.4" description = "Disable App Nap on macOS >= 10.9" optional = false python-versions = ">=3.6" +groups = ["dev"] +markers = "platform_system == \"Darwin\"" files = [ {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"}, {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"}, @@ -37,6 +41,7 @@ version = "23.1.0" description = "Argon2 for Python" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"}, {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"}, @@ -57,6 +62,7 @@ version = "21.2.0" description = "Low-level CFFI bindings for Argon2" optional = false python-versions = ">=3.6" +groups = ["dev"] files = [ {file = "argon2-cffi-bindings-21.2.0.tar.gz", hash = "sha256:bb89ceffa6c791807d1305ceb77dbfacc5aa499891d2c55661c6459651fc39e3"}, {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:ccb949252cb2ab3a08c02024acb77cfb179492d5701c7cbdbfd776124d4d2367"}, @@ -94,6 +100,7 @@ version = "1.3.0" description = "Better dates & times for Python" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"}, {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"}, @@ -109,21 +116,19 @@ test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock [[package]] name = "asttokens" -version = "2.4.1" +version = "3.0.0" description = "Annotate AST trees with source code positions" optional = false -python-versions = "*" +python-versions = ">=3.8" +groups = ["dev"] files = [ - 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Formerly nbconvert's ExecutePreprocessor." optional = false -python-versions = ">=3.8.0" +python-versions = ">=3.9.0" +groups = ["dev"] files = [ - {file = "nbclient-0.10.0-py3-none-any.whl", hash = "sha256:f13e3529332a1f1f81d82a53210322476a168bb7090a0289c795fe9cc11c9d3f"}, - {file = "nbclient-0.10.0.tar.gz", hash = "sha256:4b3f1b7dba531e498449c4db4f53da339c91d449dc11e9af3a43b4eb5c5abb09"}, + {file = "nbclient-0.10.2-py3-none-any.whl", hash = "sha256:4ffee11e788b4a27fabeb7955547e4318a5298f34342a4bfd01f2e1faaeadc3d"}, + {file = "nbclient-0.10.2.tar.gz", hash = "sha256:90b7fc6b810630db87a6d0c2250b1f0ab4cf4d3c27a299b0cde78a4ed3fd9193"}, ] [package.dependencies] @@ -1202,23 +1244,24 @@ traitlets = ">=5.4" [package.extras] dev = ["pre-commit"] -docs = ["autodoc-traits", "mock", "moto", "myst-parser", "nbclient[test]", "sphinx (>=1.7)", "sphinx-book-theme", "sphinxcontrib-spelling"] -test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest (>=7.0,<8)", "pytest-asyncio", "pytest-cov (>=4.0)", "testpath", "xmltodict"] +docs = ["autodoc-traits", "flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "mock", "moto", "myst-parser", "nbconvert (>=7.1.0)", "pytest (>=7.0,<8)", "pytest-asyncio", "pytest-cov (>=4.0)", "sphinx (>=1.7)", "sphinx-book-theme", "sphinxcontrib-spelling", "testpath", "xmltodict"] +test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.1.0)", "pytest (>=7.0,<8)", "pytest-asyncio", "pytest-cov (>=4.0)", "testpath", "xmltodict"] [[package]] name = "nbconvert" -version = "7.16.4" +version = "7.16.6" description = "Converting Jupyter Notebooks (.ipynb files) to other formats. Output formats include asciidoc, html, latex, markdown, pdf, py, rst, script. nbconvert can be used both as a Python library (`import nbconvert`) or as a command line tool (invoked as `jupyter nbconvert ...`)." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ - {file = "nbconvert-7.16.4-py3-none-any.whl", hash = "sha256:05873c620fe520b6322bf8a5ad562692343fe3452abda5765c7a34b7d1aa3eb3"}, - {file = "nbconvert-7.16.4.tar.gz", hash = "sha256:86ca91ba266b0a448dc96fa6c5b9d98affabde2867b363258703536807f9f7f4"}, + {file = "nbconvert-7.16.6-py3-none-any.whl", hash = "sha256:1375a7b67e0c2883678c48e506dc320febb57685e5ee67faa51b18a90f3a712b"}, + {file = "nbconvert-7.16.6.tar.gz", hash = "sha256:576a7e37c6480da7b8465eefa66c17844243816ce1ccc372633c6b71c3c0f582"}, ] [package.dependencies] beautifulsoup4 = "*" -bleach = "!=5.0.0" +bleach = {version = "!=5.0.0", extras = ["css"]} defusedxml = "*" jinja2 = ">=3.0" jupyter-core = ">=4.7" @@ -1230,7 +1273,6 @@ nbformat = ">=5.7" packaging = "*" pandocfilters = ">=1.4.1" pygments = ">=2.4.1" -tinycss2 = "*" traitlets = ">=5.1" [package.extras] @@ -1248,6 +1290,7 @@ version = "5.10.4" description = "The Jupyter Notebook format" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "nbformat-5.10.4-py3-none-any.whl", hash = "sha256:3b48d6c8fbca4b299bf3982ea7db1af21580e4fec269ad087b9e81588891200b"}, {file = "nbformat-5.10.4.tar.gz", hash = "sha256:322168b14f937a5d11362988ecac2a4952d3d8e3a2cbeb2319584631226d5b3a"}, @@ -1269,6 +1312,7 @@ version = "1.6.0" description = "Patch asyncio to allow nested event loops" optional = false python-versions = ">=3.5" +groups = ["dev"] files = [ {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"}, {file = "nest_asyncio-1.6.0.tar.gz", hash = "sha256:6f172d5449aca15afd6c646851f4e31e02c598d553a667e38cafa997cfec55fe"}, @@ -1276,26 +1320,27 @@ files = [ [[package]] name = "notebook" 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HTML and CSS." optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "webcolors-24.11.1-py3-none-any.whl", hash = "sha256:515291393b4cdf0eb19c155749a096f779f7d909f7cceea072791cb9095b92e9"}, {file = "webcolors-24.11.1.tar.gz", hash = "sha256:ecb3d768f32202af770477b8b65f318fa4f566c22948673a977b00d589dd80f6"}, @@ -2153,6 +2261,7 @@ version = "0.5.1" description = "Character encoding aliases for legacy web content" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"}, {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"}, @@ -2164,6 +2273,7 @@ version = "1.8.0" description = "WebSocket client for Python with low level API options" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "websocket_client-1.8.0-py3-none-any.whl", hash = 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b/modules/kernels/elm/pyproject.toml @@ -7,7 +7,7 @@ authors = [] [tool.poetry.dependencies] python = "^3.11" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] elm_kernel = "*" diff --git a/modules/kernels/javascript/default.nix b/modules/kernels/javascript/default.nix index f0b2ebb0..118da9bd 100644 --- a/modules/kernels/javascript/default.nix +++ b/modules/kernels/javascript/default.nix @@ -76,9 +76,14 @@ config = lib.mkIf config.enable { build = mkKernel (kernelFunc config.kernelArgs); - kernelArgs = + kernelArgs = let + pkgs' = import config.nixpkgs.path { + inherit system; + overlays = [(final': prev': {nodejs = prev'.nodejs_20;})]; + }; + in { - ijavascript = config.nixpkgs.nodePackages.ijavascript; + ijavascript = pkgs'.nodePackages.ijavascript; } // kernelModule.kernelArgs; }; diff --git a/modules/kernels/ocaml/default.nix b/modules/kernels/ocaml/default.nix index 4c6c57ec..a023be66 100644 --- a/modules/kernels/ocaml/default.nix +++ b/modules/kernels/ocaml/default.nix @@ -132,8 +132,14 @@ requiredOcamlPackages = lib.mkOption { type = types.attrs; - default = {merlin = "*";}; - example = {merlin = "4.7.1-500";}; + default = { + merlin = "*"; + ocaml-base-compiler = "*"; + }; + example = { + merlin = "4.7.1-500"; + ocaml-base-compiler = "5.3.0"; + }; description = '' Attribute set of required OCaml packages. ''; diff --git a/modules/kernels/postgres/pyproject.toml b/modules/kernels/postgres/pyproject.toml index a51356c9..3a4f78a0 100644 --- a/modules/kernels/postgres/pyproject.toml +++ b/modules/kernels/postgres/pyproject.toml @@ -7,7 +7,7 @@ authors = [] [tool.poetry.dependencies] python = "^3.11" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] postgres_kernel = "*" [build-system] diff --git a/modules/kernels/python/poetry.lock b/modules/kernels/python/poetry.lock index 6cb4a72f..d9a7107e 100644 --- a/modules/kernels/python/poetry.lock +++ b/modules/kernels/python/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.0.1 and should not be changed by hand. 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false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "httpcore-1.0.7-py3-none-any.whl", hash = "sha256:a3fff8f43dc260d5bd363d9f9cf1830fa3a458b332856f34282de498ed420edd"}, {file = "httpcore-1.0.7.tar.gz", hash = "sha256:8551cb62a169ec7162ac7be8d4817d561f60e08eaa485234898414bb5a8a0b4c"}, @@ -569,13 +582,14 @@ trio = ["trio (>=0.22.0,<1.0)"] [[package]] name = "httpx" -version = "0.27.2" +version = "0.28.1" description = "The next generation HTTP client." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ - {file = "httpx-0.27.2-py3-none-any.whl", hash = "sha256:7bb2708e112d8fdd7829cd4243970f0c223274051cb35ee80c03301ee29a3df0"}, - {file = "httpx-0.27.2.tar.gz", hash = "sha256:f7c2be1d2f3c3c3160d441802406b206c2b76f5947b11115e6df10c6c65e66c2"}, + {file = "httpx-0.28.1-py3-none-any.whl", hash = "sha256:d909fcccc110f8c7faf814ca82a9a4d816bc5a6dbfea25d6591d6985b8ba59ad"}, + {file = "httpx-0.28.1.tar.gz", hash = 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["ipykernel"] matplotlib = ["matplotlib"] nbconvert = ["nbconvert"] @@ -682,6 +698,7 @@ version = "20.11.0" description = "Operations with ISO 8601 durations" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042"}, {file = "isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9"}, @@ -696,6 +713,7 @@ version = "0.19.2" description = "An autocompletion tool for Python that can be used for text editors." optional = false python-versions = ">=3.6" +groups = ["dev"] files = [ {file = "jedi-0.19.2-py2.py3-none-any.whl", hash = "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"}, {file = "jedi-0.19.2.tar.gz", hash = "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0"}, @@ -711,13 +729,14 @@ testing = ["Django", "attrs", "colorama", "docopt", "pytest (<9.0.0)"] [[package]] name = "jinja2" -version = "3.1.4" +version = "3.1.5" description = "A very fast and expressive template engine." optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ - {file = "jinja2-3.1.4-py3-none-any.whl", hash = "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"}, - {file = "jinja2-3.1.4.tar.gz", hash = "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369"}, + {file = "jinja2-3.1.5-py3-none-any.whl", hash = "sha256:aba0f4dc9ed8013c424088f68a5c226f7d6097ed89b246d7749c2ec4175c6adb"}, + {file = "jinja2-3.1.5.tar.gz", hash = "sha256:8fefff8dc3034e27bb80d67c671eb8a9bc424c0ef4c0826edbff304cceff43bb"}, ] [package.dependencies] @@ -728,13 +747,14 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "json5" -version = "0.9.28" +version = "0.10.0" description = "A Python implementation of the JSON5 data format." optional = false python-versions = ">=3.8.0" +groups = ["dev"] files = [ - {file = 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JSON Schema validation for Python" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "jsonschema-4.23.0-py3-none-any.whl", hash = "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"}, {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"}, @@ -786,6 +808,7 @@ version = "2024.10.1" description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "jsonschema_specifications-2024.10.1-py3-none-any.whl", hash = "sha256:a09a0680616357d9a0ecf05c12ad234479f549239d0f5b55f3deea67475da9bf"}, {file = "jsonschema_specifications-2024.10.1.tar.gz", hash = "sha256:0f38b83639958ce1152d02a7f062902c41c8fd20d558b0c34344292d417ae272"}, @@ -800,6 +823,7 @@ version = "8.6.3" description = "Jupyter protocol implementation and client libraries" optional = false python-versions = ">=3.8" +groups = 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[[package]] name = "six" -version = "1.16.0" +version = "1.17.0" description = "Python 2 and 3 compatibility utilities" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" +groups = ["dev"] files = [ - {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"}, - {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"}, + {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"}, + {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"}, ] [[package]] @@ -1851,6 +1940,7 @@ version = "1.3.1" description = "Sniff out which async library your code is running under" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "sniffio-1.3.1-py3-none-any.whl", hash = "sha256:2f6da418d1f1e0fddd844478f41680e794e6051915791a034ff65e5f100525a2"}, {file = "sniffio-1.3.1.tar.gz", hash = "sha256:f4324edc670a0f49750a81b895f35c3adb843cca46f0530f79fc1babb23789dc"}, @@ -1862,6 +1952,7 @@ version = "2.6" description = "A modern CSS selector implementation for Beautiful Soup." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "soupsieve-2.6-py3-none-any.whl", hash = "sha256:e72c4ff06e4fb6e4b5a9f0f55fe6e81514581fca1515028625d0f299c602ccc9"}, {file = "soupsieve-2.6.tar.gz", hash = "sha256:e2e68417777af359ec65daac1057404a3c8a5455bb8abc36f1a9866ab1a51abb"}, @@ -1873,6 +1964,7 @@ version = "0.6.3" description = "Extract data from python stack frames and tracebacks for informative displays" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"}, {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"}, @@ -1892,6 +1984,7 @@ version = "0.18.1" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0"}, {file = "terminado-0.18.1.tar.gz", hash = "sha256:de09f2c4b85de4765f7714688fff57d3e75bad1f909b589fde880460c753fd2e"}, @@ -1913,6 +2006,7 @@ version = "0.4.2" description = "A unit testing framework for Jupyter Notebooks" optional = false python-versions = ">=3.6" +groups = ["dev"] files = [ {file = "testbook-0.4.2-py3-none-any.whl", hash = "sha256:21e03818017d1315607e117c101cf4b5f5b6dcd5ead77eab65ac9508a281f644"}, ] @@ -1932,6 +2026,7 @@ version = "1.4.0" description = "A tiny CSS parser" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "tinycss2-1.4.0-py3-none-any.whl", hash = "sha256:3a49cf47b7675da0b15d0c6e1df8df4ebd96e9394bb905a5775adb0d884c5289"}, {file = "tinycss2-1.4.0.tar.gz", hash = "sha256:10c0972f6fc0fbee87c3edb76549357415e94548c1ae10ebccdea16fb404a9b7"}, @@ -1950,6 +2045,7 @@ version = "6.4.2" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "tornado-6.4.2-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:e828cce1123e9e44ae2a50a9de3055497ab1d0aeb440c5ac23064d9e44880da1"}, {file = "tornado-6.4.2-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:072ce12ada169c5b00b7d92a99ba089447ccc993ea2143c9ede887e0937aa803"}, @@ -1970,6 +2066,7 @@ version = "5.14.3" description = "Traitlets Python configuration system" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"}, {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"}, @@ -1981,13 +2078,14 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0, [[package]] name = "types-python-dateutil" -version = "2.9.0.20241003" +version = "2.9.0.20241206" description = "Typing stubs for python-dateutil" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ - {file = "types-python-dateutil-2.9.0.20241003.tar.gz", hash = "sha256:58cb85449b2a56d6684e41aeefb4c4280631246a0da1a719bdbe6f3fb0317446"}, - {file = "types_python_dateutil-2.9.0.20241003-py3-none-any.whl", hash = "sha256:250e1d8e80e7bbc3a6c99b907762711d1a1cdd00e978ad39cb5940f6f0a87f3d"}, + {file = "types_python_dateutil-2.9.0.20241206-py3-none-any.whl", hash = "sha256:e248a4bc70a486d3e3ec84d0dc30eec3a5f979d6e7ee4123ae043eedbb987f53"}, + {file = "types_python_dateutil-2.9.0.20241206.tar.gz", hash = "sha256:18f493414c26ffba692a72369fea7a154c502646301ebfe3d56a04b3767284cb"}, ] [[package]] @@ -1996,6 +2094,7 @@ version = "4.12.2" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"}, {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, @@ -2007,6 +2106,7 @@ version = "1.3.0" description = "RFC 6570 URI Template Processor" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"}, {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"}, @@ -2017,13 +2117,14 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake [[package]] name = "urllib3" -version = "2.2.3" +version = "2.3.0" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" +groups = ["dev"] files = [ - {file = "urllib3-2.2.3-py3-none-any.whl", hash = "sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac"}, - {file = "urllib3-2.2.3.tar.gz", hash = "sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"}, + {file = "urllib3-2.3.0-py3-none-any.whl", hash = "sha256:1cee9ad369867bfdbbb48b7dd50374c0967a0bb7710050facf0dd6911440e3df"}, + {file = "urllib3-2.3.0.tar.gz", hash = "sha256:f8c5449b3cf0861679ce7e0503c7b44b5ec981bec0d1d3795a07f1ba96f0204d"}, ] [package.extras] @@ -2038,6 +2139,7 @@ version = "0.2.13" description = "Measures the displayed width of unicode strings in a terminal" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, @@ -2049,6 +2151,7 @@ version = "24.11.1" description = "A library for working with the color formats defined by HTML and CSS." optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "webcolors-24.11.1-py3-none-any.whl", hash = "sha256:515291393b4cdf0eb19c155749a096f779f7d909f7cceea072791cb9095b92e9"}, {file = "webcolors-24.11.1.tar.gz", hash = "sha256:ecb3d768f32202af770477b8b65f318fa4f566c22948673a977b00d589dd80f6"}, @@ -2060,6 +2163,7 @@ version = "0.5.1" description = "Character encoding aliases for legacy web content" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"}, {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"}, @@ -2071,6 +2175,7 @@ version = "1.8.0" description = "WebSocket client for Python with low level API options" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"}, {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"}, @@ -2082,6 +2187,6 @@ optional = ["python-socks", "wsaccel"] test = ["websockets"] [metadata] -lock-version = "2.0" +lock-version = "2.1" python-versions = "^3.11" content-hash = "2c029b5a298849739356b9541782fc50eded8815e89cfea5dbadb46851b579f1" diff --git a/pyproject.toml b/pyproject.toml index 7b1ca906..45baafac 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ authors = [] [tool.poetry.dependencies] python = "^3.11" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] testbook = "*" jupyterlab = "*"