python-app.yml

name: MINE-Database

on: [push, pull_request]

jobs:
  build-linux:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.9]

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Add conda to system path
      run: |
        echo $CONDA/bin >> $GITHUB_PATH
    - name: Install dependencies and create base conda environment
      run: |
        python -m pip install --upgrade pip
        pip install flake8 tox black flake8-bugbear flake8-docstrings isort tox
        conda env update --file environment.yml --name base
        conda install pytest pytest-cov
        conda develop ../MINE-Database
    - name: Run tox to determine formatting and safety
      if: always()
      run: |
        tox
    - name: Test with pytest
      if: always()
      run: |
        pytest