Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Create script for assembling internal reference cohort #186

Open
JMarzec opened this issue Mar 14, 2025 · 0 comments
Open

Create script for assembling internal reference cohort #186

JMarzec opened this issue Mar 14, 2025 · 0 comments

Comments

@JMarzec
Copy link
Member

JMarzec commented Mar 14, 2025

Create script that will allow (semi)-automated assembly of internal reference cohort, mainly for the batch-effects correction step (set to FALSE as default). Re-use the following pipeline for that:

https://github.com/umccr/Pancreatic-data-harmonization/blob/master/expression/in-house/UMCCR-RNAsum/README.md
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@JMarzec