From ce9b492b131e271bcff28b449c7bbc019a612abe Mon Sep 17 00:00:00 2001 From: Andrew Whitwham Date: Tue, 22 Jun 2021 11:26:41 +0100 Subject: [PATCH] Summer 2021 release copyright updates. --- LICENSE | 2 +- bam_addrprg.c | 2 +- bam_cat.c | 2 +- bam_flags.c | 2 +- bam_plcmd.c | 2 +- bam_sort.c | 2 +- bedcov.c | 2 +- configure.ac | 2 +- doc/samtools-ampliconclip.1 | 2 +- doc/samtools-ampliconstats.1 | 2 +- doc/samtools-coverage.1 | 2 +- doc/samtools-depth.1 | 2 +- doc/samtools-merge.1 | 2 +- misc/export2sam.pl | 2 +- test/test.pl | 2 +- 15 files changed, 15 insertions(+), 15 deletions(-) diff --git a/LICENSE b/LICENSE index 428b099c7..cd102b88d 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ The MIT/Expat License -Copyright (C) 2008-2020 Genome Research Ltd. +Copyright (C) 2008-2021 Genome Research Ltd. Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/bam_addrprg.c b/bam_addrprg.c index 536bd491d..06c31474a 100644 --- a/bam_addrprg.c +++ b/bam_addrprg.c @@ -1,6 +1,6 @@ /* bam_addrprg.c -- samtools command to add or replace readgroups. - Copyright (c) 2013, 2015-2017, 2019-2020 Genome Research Limited. + Copyright (c) 2013, 2015-2017, 2019-2021 Genome Research Limited. Author: Martin O. Pollard diff --git a/bam_cat.c b/bam_cat.c index 8e873c824..ed8cf58c5 100644 --- a/bam_cat.c +++ b/bam_cat.c @@ -1,6 +1,6 @@ /* bam_cat.c -- efficiently concatenates bam files. - Copyright (C) 2008-2009, 2011-2013, 2015-2017, 2019 Genome Research Ltd. + Copyright (C) 2008-2009, 2011-2013, 2015-2017, 2019, 2021 Genome Research Ltd. Modified SAMtools work copyright (C) 2010 Illumina, Inc. Permission is hereby granted, free of charge, to any person obtaining a copy diff --git a/bam_flags.c b/bam_flags.c index 1ac998b60..78312eee7 100644 --- a/bam_flags.c +++ b/bam_flags.c @@ -1,6 +1,6 @@ /* bam_flags.c -- flags subcommand. - Copyright (C) 2013-2014 Genome Research Ltd. + Copyright (C) 2013-2014, 2021 Genome Research Ltd. Author: Petr Danecek diff --git a/bam_plcmd.c b/bam_plcmd.c index a59e788e2..6fd282c8d 100644 --- a/bam_plcmd.c +++ b/bam_plcmd.c @@ -1,6 +1,6 @@ /* bam_plcmd.c -- mpileup subcommand. - Copyright (C) 2008-2015, 2019-2020 Genome Research Ltd. + Copyright (C) 2008-2015, 2019-2021 Genome Research Ltd. Portions copyright (C) 2009-2012 Broad Institute. Author: Heng Li diff --git a/bam_sort.c b/bam_sort.c index b4b179bb1..46a1d80fd 100644 --- a/bam_sort.c +++ b/bam_sort.c @@ -1,6 +1,6 @@ /* bam_sort.c -- sorting and merging. - Copyright (C) 2008-2020 Genome Research Ltd. + Copyright (C) 2008-2021 Genome Research Ltd. Portions copyright (C) 2009-2012 Broad Institute. Author: Heng Li diff --git a/bedcov.c b/bedcov.c index 0c8f74e2a..bccc09ba1 100644 --- a/bedcov.c +++ b/bedcov.c @@ -1,7 +1,7 @@ /* bedcov.c -- bedcov subcommand. Copyright (C) 2012 Broad Institute. - Copyright (C) 2013-2014, 2018-2020 Genome Research Ltd. + Copyright (C) 2013-2014, 2018-2021 Genome Research Ltd. Author: Heng Li diff --git a/configure.ac b/configure.ac index a1b1a5acc..39480bc67 100644 --- a/configure.ac +++ b/configure.ac @@ -34,7 +34,7 @@ m4_include([m4/hts_with_curses.m4]) m4_include([m4/ax_with_htslib.m4]) dnl Copyright notice to be copied into the generated configure script -AC_COPYRIGHT([Portions copyright (C) 2015,2017 Genome Research Ltd. +AC_COPYRIGHT([Portions copyright (C) 2015,2017, 2019 Genome Research Ltd. This configure script is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.]) diff --git a/doc/samtools-ampliconclip.1 b/doc/samtools-ampliconclip.1 index c957313f0..3eb940883 100644 --- a/doc/samtools-ampliconclip.1 +++ b/doc/samtools-ampliconclip.1 @@ -3,7 +3,7 @@ .SH NAME samtools ampliconclip \- clip reads using a BED file .\" -.\" Copyright (C) 2008-2011, 2013-2020 Genome Research Ltd. +.\" Copyright (C) 2008-2011, 2013-2021 Genome Research Ltd. .\" Portions copyright (C) 2010, 2011 Broad Institute. .\" .\" Author: Andrew Whitwham diff --git a/doc/samtools-ampliconstats.1 b/doc/samtools-ampliconstats.1 index 11aa8c734..31245a38c 100644 --- a/doc/samtools-ampliconstats.1 +++ b/doc/samtools-ampliconstats.1 @@ -3,7 +3,7 @@ .SH NAME samtools ampliconstats \- produces statistics from amplicon sequencing alignment file .\" -.\" Copyright (C) 2020 Genome Research Ltd. +.\" Copyright (C) 2020-2021 Genome Research Ltd. .\" .\" Author: James Bonfield .\" diff --git a/doc/samtools-coverage.1 b/doc/samtools-coverage.1 index 8e159854f..1695a4dc9 100644 --- a/doc/samtools-coverage.1 +++ b/doc/samtools-coverage.1 @@ -3,7 +3,7 @@ .SH NAME samtools coverage \- produces a histogram or table of coverage per chromosome .\" -.\" Copyright (C) 2019 Genome Research Ltd. +.\" Copyright (C) 2019, 2021 Genome Research Ltd. .\" .\" Author: James Bonfield .\" diff --git a/doc/samtools-depth.1 b/doc/samtools-depth.1 index 287492a6a..f5853eaec 100644 --- a/doc/samtools-depth.1 +++ b/doc/samtools-depth.1 @@ -3,7 +3,7 @@ .SH NAME samtools depth \- computes the read depth at each position or region .\" -.\" Copyright (C) 2008-2011, 2013-2020 Genome Research Ltd. +.\" Copyright (C) 2008-2011, 2013-2021 Genome Research Ltd. .\" Portions copyright (C) 2010, 2011 Broad Institute. .\" .\" Author: Heng Li diff --git a/doc/samtools-merge.1 b/doc/samtools-merge.1 index 8fa7afe11..380d0b6e3 100644 --- a/doc/samtools-merge.1 +++ b/doc/samtools-merge.1 @@ -3,7 +3,7 @@ .SH NAME samtools merge \- merges multiple sorted files into a single file .\" -.\" Copyright (C) 2008-2011, 2013-2019 Genome Research Ltd. +.\" Copyright (C) 2008-2011, 2013-2019, 2021 Genome Research Ltd. .\" Portions copyright (C) 2010, 2011 Broad Institute. .\" .\" Author: Heng Li diff --git a/misc/export2sam.pl b/misc/export2sam.pl index c6b5d2bb3..5f134b6c4 100755 --- a/misc/export2sam.pl +++ b/misc/export2sam.pl @@ -9,7 +9,7 @@ # # The MIT License # -# Copyright (c) 2008-2010 Genome Research Ltd. +# Copyright (c) 2008-2011 Genome Research Ltd. # Modifications Copyright (c) 2010 Illumina, Inc. # # Permission is hereby granted, free of charge, to any person obtaining a copy diff --git a/test/test.pl b/test/test.pl index 0adb45290..ba8e93677 100755 --- a/test/test.pl +++ b/test/test.pl @@ -1,6 +1,6 @@ #!/usr/bin/env perl # -# Copyright (C) 2013-2020 Genome Research Ltd. +# Copyright (C) 2013-2021 Genome Research Ltd. # # Author: Petr Danecek #