setup.py

import setuptools
with open("README.md", "r") as fh:
    long_description = fh.read()

setuptools.setup(
      name='decouphage',
      version='0.0.5',
      description='decouphage - A tool to annotate phage genomes.',
      long_description=long_description,
      long_description_content_type="text/markdown",
      author='Ricardo Pascal',
      author_email='voorloop@gmail.com',
      url='https://github.com/voorloopnul/decouphage',
      packages=setuptools.find_packages(),
      scripts=['decouphage'],
      python_requires='>=3.4',
      install_requires=[
            "biopython >=1.79",
            "phanotate >=1.5.0",
            "pandas >=1.4.2",
            "click >=8.1.3",
            "alive-progress >=2.4.1",
            "requests >=2.27.1",
      ]
)