Merge pull request #679 from neutrinoceros/dep/ditch-pytest-cov

TST: use `coverage` directly, ditch `pytest-cov`

Author: VChristiaens

.codecov.yml

@@ -37,7 +37,7 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install . --group dev
+        pip install --editable . --group dev
 #    Uncomment below when ready to deal with a lot of PEP8 formatting changes
 #    - name: Verify files with pre-commit
 #      run: |
@@ -52,7 +52,8 @@ jobs:
 #        pre-commit run --files src/**/*.py
     - name: Test with pytest
       run: |
-        pytest tests/pre_3_10 --cov=src --cov-report=xml --splits 3 --group ${{ matrix.group }}
+        coverage run --source src -m pytest tests/pre_3_10 --splits 3 --group ${{ matrix.group }}
+        coverage xml
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v3
 
@@ -73,7 +74,7 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install . --group dev
+        pip install --editable . --group dev
 #    - name: Verify files with pre-commit
 #      run: |
 #        # Setup pre-commit hooks
@@ -87,6 +88,7 @@ jobs:
 #        pre-commit run --files src/vip_hci/objects/*.py
     - name: Test with pytest
       run: |
-        pytest tests/post_3_10 --cov=src/vpi_hci/objects/ --cov-report=xml
+        coverage run --source=src/vip_hci/objects/ -m pytest tests/post_3_10
+        coverage xml
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v3

.github/workflows/ci.yml

@@ -49,7 +49,8 @@ test:
 	pre-commit install-hooks
 	pre-commit install
 	pre-commit run --files src/**/*.py
-	pytest --cov=src --cov-report=xml
+	coverate run -m pytest
+	coverage xml
 	rm confi_hist.pdf
 	rm confi_hist_gaussfit.pdf
 	rm confidence.txt

Makefile

@@ -47,6 +47,7 @@ dependencies = [
 
 [dependency-groups]
 dev = [
+    "coverage>=7.10.0",
     "build",
     "twine",
     "opencv-python",
@@ -55,7 +56,6 @@ dev = [
     "myst-parser",
     "pandoc",
     "pytest",
-    "pytest-cov ~=2.6.0",
     "pytest-split",
     "flake8",
     "flake8-bandit",