Testing upstream ISSM update & new spack-variant by lawrenceabird · Pull Request #26 · ACCESS-NRI/ACCESS-ISSM

lawrenceabird · 2025-10-16T20:51:02Z

This draft PR tests a new build of ACCESS-ISSM based on an updated ISSM code base. It also integrates updates to the ISSM spack-package that have been implemented here.

🚀 The latest prerelease access-issm/pr26-3 at 45ffe58 is here: #26 (comment) 🚀

- Point to specific commit for latest ISSM version. - Add py-tools to include Python code.

Update spack-packages to use: ACCESS-NRI/access-spack-packages@b6181a7

github-actions · 2025-10-16T21:24:55Z

🚀 Attempted to deploy access-issm Prerelease pr26-1 with commit 6252137

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-1 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-1

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-1 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version b6181a7495a6fdf7b7a071d6f3d8c9c753e16a87
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

Update spack-packages to new version that includes +py-tools variant, and sets $ISSM_DIR $PYTHONPATH environment variables.

Revert ISSM code to existing release state to test (A) ONLY Py-tool variant; (B) Correct toolkit generation on gadi

github-actions · 2025-10-26T21:03:23Z

🚀 Attempted to deploy access-issm Prerelease pr26-2 with commit 054a871

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-2 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-2

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-2 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

The ISSM package.py specifies that petsc should only be used when ~ad is specified. ad default = False, but perhaps it needs to be explicitly specified.

github-actions · 2025-10-26T21:53:28Z

🚀 Attempted to deploy access-issm Prerelease pr26-3 with commit f34034a

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-3 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-3

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-3 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

Try forcing the specification of +openmp to overcome openmpi dependency issue.

github-actions · 2025-10-26T22:34:04Z

🚀 Attempted to deploy access-issm Prerelease pr26-4 with commit d906b63

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-4 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-4

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-4 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

Following tests of spack-package updates, now try rebuilding with newer ISSM code base again.

github-actions · 2025-10-26T23:01:56Z

🚀 Attempted to deploy access-issm Prerelease pr26-5 with commit ad650b7

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-5 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-5

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-5 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

Remove ~ad and +openmp to confirm that this is responsible for Petsc build issue.

github-actions · 2025-10-27T00:56:30Z

🚀 Attempted to deploy access-issm Prerelease pr26-6 with commit 31fe38a

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-6 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-6

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-6 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

Add ~ad again to test if this build with Petsc

github-actions · 2025-10-27T01:34:49Z

🚀 Attempted to deploy access-issm Prerelease pr26-7 with commit 0814150

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-7 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-7

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-7 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

…of issue in PR26-3

github-actions · 2025-10-27T01:51:21Z

🚀 Attempted to deploy access-issm Prerelease pr26-8 with commit 8f6e205

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-8 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-8

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-8 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

~ad should be default. Which means it should build with Petsc

github-actions · 2025-10-27T02:27:31Z

🚀 Attempted to deploy access-issm Prerelease pr26-9 with commit 9993894

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-9 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-9

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-9 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 2025.10.001
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

github-actions · 2025-10-27T04:49:39Z

🚀 Attempted to deploy access-issm Prerelease pr26-10 with commit 9c41dd9

🖥️ `Gadi` Deployment ❌

github-actions · 2025-10-27T04:57:12Z

🚀 Attempted to deploy access-issm Prerelease pr26-11 with commit 9c41dd9

🖥️ `Gadi` Deployment ❌

github-actions · 2025-10-27T05:07:26Z

🚀 Attempted to deploy access-issm Prerelease pr26-12 with commit 9c41dd9

🖥️ `Gadi` Deployment ❌

github-actions · 2025-10-27T05:36:26Z

🚀 Attempted to deploy access-issm Prerelease pr26-13 with commit 9c41dd9

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-13 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-13

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-13 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version lb/fix-ad-variant
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

github-actions · 2025-10-27T06:03:06Z

🚀 Attempted to deploy access-issm Prerelease pr26-14 with commit 9c41dd9

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-14 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-14

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-14 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version lb/fix-ad-variant
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

github-actions · 2025-10-27T22:48:26Z

🚀 Attempted to deploy access-issm Prerelease pr26-15 with commit d0b53f6

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-15 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-15

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-15 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version lb/fix-ad-variant
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

Testing latest ISSM build (7f75a90562fae6834a33bdc6276eaa5dc2cbcf66) without AD

github-actions · 2025-10-28T01:22:59Z

🚀 Attempted to deploy access-issm Prerelease pr26-16 with commit 0394656

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-16 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-16

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-16 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version lb/fix-ad-variant
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

github-actions · 2025-10-28T03:42:12Z

🚀 Attempted to deploy access-issm Prerelease pr26-17 with commit 914e6b3

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-17 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-17

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-17 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version a2232058dcd21ceb34bc820898daa717923c628b
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

lawrenceabird · 2025-10-28T03:47:56Z

Build succeeded, but there is an error at module load:

load access-issm/pr26-17[lb9857@gadi-login-07 lb9857]$ module load access-issm/pr26-17
Loading access-issm/dependencies/pr26-17/issm/7f75a90562fae6834a33bdc6276eaa5dc2cbcf66-vd7km2e
  ERROR: Unable to locate a modulefile for 'access-issm/dependencies/pr26-17/openmpi/4.1.7-3enketu'
  ERROR: Requirement access-issm/dependencies/pr26-17/openmpi/4.1.7-3enketu is not loaded

Loading access-issm/pr26-17
  ERROR: Load of requirement access-issm/dependencies/pr26-17/openmpi/4.1.7-3enketu failed
  ERROR: Load of requirement access-issm/dependencies/pr26-17/issm/7f75a90562fae6834a33bdc6276eaa5dc2cbcf66-vd7km2e failed

Trying a redeploy with no changes.

github-actions · 2025-10-28T03:55:27Z

🚀 Attempted to deploy access-issm Prerelease pr26-18 with commit 914e6b3

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-18 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-18

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-18 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version a2232058dcd21ceb34bc820898daa717923c628b
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

lawrenceabird · 2025-10-28T04:15:51Z

Build successfully; module load successful, and toolkits file looks correct. Model run successful, but with various warnings in *.outlog

[gadi-cpu-clx-1621:23:2539892 - context.c:307][2025-10-28 15:03:09] ERROR failed to initialize sharp
Failed to open log file (stdout)[gadi-cpu-clx-1621:15:2539885 - context.c:307][2025-10-28 15:03:09] ERROR failed to initialize sharp
Failed to open log file (stdout)[gadi-cpu-clx-1621:5:2539876 - context.c:307][2025-10-28 15:03:09] ERROR failed to initialize sharp
Failed to open log file (stdout)[gadi-cpu-clx-1621:2:2539873 - context.c:307][2025-10-28 15:03:09] ERROR failed to initialize sharp
Failed to open log file (stdout)[gadi-cpu-clx-1621:0:2539871 - context.c:307][2025-10-28 15:03:09] ERROR failed to initialize sharp
Failed to open log file (stdout)Failed to open log file (stdout)[gadi-cpu-clx-1621:17:2539889 - context.c:307][2025-10-28 15:03:09] ERROR failed to initialize sharp
[gadi-cpu-clx-1621:4:2539878 - context.c:307][2025-10-28 15:03:09] ERROR failed to initialize sharp

I think this is related to openMP flags. In the build log associated with the latest build (pr26-18), the petsc variants look like:

^petsc@3.21.1%gcc@13.2.0~X~batch~cgns~complex~cuda~debug+double~examples~exodusii~fftw+fortran~giflib+hdf5~hpddm~hwloc+hypre~int64~jpeg~knl~kokkos~libpng~libyaml~memkind+metis~mkl-pardiso~mmg~moab~mpfr+mpi+mumps~openmp~p4est~parmmg~ptscotch~random123~rocm~saws+scalapack+shared~strumpack~suite-sparse+superlu-dist~sycl~tetgen~trilinos~valgrind~zoltan build_system=generic clanguage=C memalign=none arch=linux-rocky8-x86_64

This potentially suggests that openmp is being disabled by default with petsc+mumps options.

Next steps:

Test build with +ad to ensure that petsc is dropped.
Update spack-packages to add openmp flag to mumps (And add necessary additional conditions: depends_on("petsc~examples+metis+mumps+openmp+scalapack")

github-actions · 2025-10-28T05:03:55Z

🚀 Attempted to deploy access-issm Prerelease pr26-19 with commit e87dce8

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-19 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-19

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-19 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version a2232058dcd21ceb34bc820898daa717923c628b
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

lawrenceabird · 2025-10-28T21:34:52Z

AD Model launched, but failed due to an ISSM error. Next tests:

Rebuild ~ad (default) variant with +openmp variant passed to petsc. Does this fix the log file errors in the *.outlog file?
Rebuild +ad variant with comparable ISSM version that Felicity has on her local machine 4a8c078eefe06f23665322e153b35f8594b4e626 to see if execution completes.

github-actions · 2025-10-28T21:48:08Z

🚀 Attempted to deploy access-issm Prerelease pr26-19 with commit e063619

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-19 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-19

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-19 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 3ae3eac7206c342746cfb439bda0e520569d60ae
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

lawrenceabird · 2025-10-28T21:53:11Z

Model build and module load successful. But, Petsc not found in toolkits. Redeploy to ensure it wasn't just a build error.

lawrenceabird · 2025-10-28T21:53:17Z

!redeploy

github-actions · 2025-10-28T21:56:21Z

🚀 Attempted to deploy access-issm Prerelease pr26-2 with commit e063619

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-2 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-2

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-2 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 3ae3eac7206c342746cfb439bda0e520569d60ae
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

lawrenceabird · 2025-10-28T22:12:24Z

Same issue. Petsc not found in toolkits. Adding +openmp to depends_on(petsc...) appears to cause this issue. Try now to add +openmp variant to the mumps variant of petsc only. See commit 45ffe58.

github-actions · 2025-10-28T22:15:20Z

🚀 Attempted to deploy access-issm Prerelease pr26-3 with commit 45ffe58

🖥️ `Gadi` Deployment ❌

lawrenceabird · 2025-10-28T22:26:25Z

!redeploy

github-actions · 2025-10-28T22:29:32Z

🚀 Attempted to deploy access-issm Prerelease pr26-3 with commit 45ffe58

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-issm, defined in ./spack.yaml, will be deployed to Gadi as:

2025.03.0 as a Release (when merged).
pr26-3 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-issm/pr26-3

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/0.22/spack in the access-issm-pr26-3 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 0.22
access-nri/spack-packages version 9ff20ba9201f0552c7f50b2db1e2f9458da3e004
access-nri/spack-config version 2025.08.000

If the above was not what was expected, commit changes to config/versions.json in this PR.

lawrenceabird added 2 commits October 17, 2025 07:44

Update issm package requirement to specific commit & add py-tools

9a46857

- Point to specific commit for latest ISSM version. - Add py-tools to include Python code.

Update spack-packages version

6252137

Update spack-packages to use: ACCESS-NRI/access-spack-packages@b6181a7

lawrenceabird temporarily deployed to Gadi Prerelease October 16, 2025 20:51 — with GitHub Actions Inactive

lawrenceabird mentioned this pull request Oct 16, 2025

Add py-tools variant and set $ISSM_DIR Environment Variable ACCESS-NRI/access-spack-packages#336

Merged

lawrenceabird added 2 commits October 24, 2025 15:09

[no ci] Update to new spack-package

a90143c

Update spack-packages to new version that includes +py-tools variant, and sets $ISSM_DIR $PYTHONPATH environment variables.

[no ci] Revert to current release ISSM state

054a871

Revert ISSM code to existing release state to test (A) ONLY Py-tool variant; (B) Correct toolkit generation on gadi

[no ci] Force exclude ad to test PETSC toolkit

f34034a

The ISSM package.py specifies that petsc should only be used when ~ad is specified. ad default = False, but perhaps it needs to be explicitly specified.

[no ci] Force specify openmp

d906b63

Try forcing the specification of +openmp to overcome openmpi dependency issue.

[no ci] Test update to newer ISSM code base

ad650b7

Following tests of spack-package updates, now try rebuilding with newer ISSM code base again.

[no ci] Revert variant fix to confirm error

31fe38a

Remove ~ad and +openmp to confirm that this is responsible for Petsc build issue.

[no ci] Force exclude ad to test PETSC toolkit

0814150

Add ~ad again to test if this build with Petsc

[no ci] Revert to current release ISSM state to test reproducibility …

8f6e205

…of issue in PR26-3

[no ci] Test removal of ~ad

9993894

~ad should be default. Which means it should build with Petsc

[no ci] -- Working tests for SPR changes

9c41dd9

[no ci] Add +ad variant for testing

d0b53f6

[no ci] Update to latest ISSM build w/ no ad

0394656

Testing latest ISSM build (7f75a90562fae6834a33bdc6276eaa5dc2cbcf66) without AD

[no ci] Point to explicit spack-packages update for testing

914e6b3

[no ci] Test AD variant doesn't use petsc

e87dce8

[no ci] Test added openmp variant to petsc for ~ad build

e063619

[no ci] Test with +openmp variant to mumps when building with petsc

45ffe58

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🖥️ `Gadi` Deployment ✔️

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