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update function load_model_mappings by adding component oceanBgchem #225

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Merged
rbeucher merged 1 commit into from
Mar 18, 2026
Merged

update function load_model_mappings by adding component oceanBgchem #225

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29 changes: 14 additions & 15 deletions src/access_moppy/utilities.py
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Original file line number Diff line number Diff line change
Expand Up @@ -136,6 +136,7 @@ def load_model_mappings(compound_name: str, model_id: str = None) -> Dict:
"atmosphere",
"land",
"ocean",
"oceanBgchem",
"time_invariant",
"sea_ice",
]:
Expand Down Expand Up @@ -374,7 +375,7 @@ def _repr_html_(self):
html += f"""
<tr style="border-bottom: 1px solid #eee;">
<td style="padding: 6px 0; color: #666; font-weight: 500;">CF Standard Name:</td>
<td style="padding: 6px 0; font-family: monospace; font-size: 0.85em;">{variable_info['CF standard Name']}</td>
<td style="padding: 6px 0; font-family: monospace; font-size: 0.85em;">{variable_info["CF standard Name"]}</td>
</tr>
"""

Expand All @@ -383,7 +384,7 @@ def _repr_html_(self):
html += f"""
<tr style="border-bottom: 1px solid #eee;">
<td style="padding: 6px 0; color: #666; font-weight: 500;">Units:</td>
<td style="padding: 6px 0; font-family: monospace; color: #d73027;">{variable_info['units']}</td>
<td style="padding: 6px 0; font-family: monospace; color: #d73027;">{variable_info["units"]}</td>
</tr>
"""

Expand Down Expand Up @@ -456,21 +457,21 @@ def _repr_html_(self):
html += f"""
<tr style="border-bottom: 1px solid #eee;">
<td style="padding: 6px 0; color: #666; font-weight: 500; padding-left: 20px;">Formula:</td>
<td style="padding: 6px 0; font-family: monospace; color: #333; font-size: 0.85em;">{calc['formula']}</td>
<td style="padding: 6px 0; font-family: monospace; color: #333; font-size: 0.85em;">{calc["formula"]}</td>
</tr>
"""
elif calc_type == "formula" and "operation" in calc:
html += f"""
<tr style="border-bottom: 1px solid #eee;">
<td style="padding: 6px 0; color: #666; font-weight: 500; padding-left: 20px;">Operation:</td>
<td style="padding: 6px 0; font-family: monospace; color: #333; font-size: 0.85em;">{calc['operation']}</td>
<td style="padding: 6px 0; font-family: monospace; color: #333; font-size: 0.85em;">{calc["operation"]}</td>
</tr>
"""
elif calc_type == "dataset_function" and "function" in calc:
html += f"""
<tr style="border-bottom: 1px solid #eee;">
<td style="padding: 6px 0; color: #666; font-weight: 500; padding-left: 20px;">Function:</td>
<td style="padding: 6px 0; font-family: monospace; color: #333; font-size: 0.85em;">{calc['function']}</td>
<td style="padding: 6px 0; font-family: monospace; color: #333; font-size: 0.85em;">{calc["function"]}</td>
</tr>
"""

Expand All @@ -480,7 +481,7 @@ def _repr_html_(self):
html += f"""
<tr style="border-bottom: 1px solid #eee;">
<td style="padding: 6px 0; color: #666; font-weight: 500;">Vertical Coord:</td>
<td style="padding: 6px 0; font-family: monospace; color: #0066cc;">{zaxis.get('type', 'Unknown')}</td>
<td style="padding: 6px 0; font-family: monospace; color: #0066cc;">{zaxis.get("type", "Unknown")}</td>
</tr>
"""

Expand All @@ -489,7 +490,7 @@ def _repr_html_(self):
html += f"""
<tr style="border-bottom: 1px solid #eee;">
<td style="padding: 6px 0; color: #666; font-weight: 500;">Positive:</td>
<td style="padding: 6px 0; font-family: monospace; color: #333;">{variable_info['positive']}</td>
<td style="padding: 6px 0; font-family: monospace; color: #333;">{variable_info["positive"]}</td>
</tr>
"""

Expand Down Expand Up @@ -1535,7 +1536,7 @@ def validate_consistent_frequency(
# For monthly data with large tolerance, concatenation result is likely sufficient
if auto_tolerance >= 86400: # >= 1 day tolerance (monthly data)
print(
f"📅 Large tolerance detected ({auto_tolerance/86400:.1f} days) - concatenated frequency sufficient"
f"📅 Large tolerance detected ({auto_tolerance / 86400:.1f} days) - concatenated frequency sufficient"
)
return detected_freq

Expand Down Expand Up @@ -1599,7 +1600,7 @@ def _validate_frequency_consistency_detailed(
if tolerance_seconds is None:
tolerance_seconds = _determine_smart_tolerance(base_freq)
print(
f"📏 Auto-determined tolerance: {tolerance_seconds/86400:.1f} days ({tolerance_seconds:.0f}s) for frequency ~{base_freq}"
f"📏 Auto-determined tolerance: {tolerance_seconds / 86400:.1f} days ({tolerance_seconds:.0f}s) for frequency ~{base_freq}"
)

inconsistent_files = []
Expand All @@ -1626,9 +1627,7 @@ def _validate_frequency_consistency_detailed(
error_msg += "(From concatenation analysis)\n"
else:
error_msg += f"Reference file: {file_info[0][0]}\n"
error_msg += (
f"Tolerance: {tolerance_seconds}s ({tolerance_seconds/86400:.2f} days)\n\n"
)
error_msg += f"Tolerance: {tolerance_seconds}s ({tolerance_seconds / 86400:.2f} days)\n\n"
error_msg += "Inconsistent files:\n"
for info in inconsistent_files:
error_msg += f" {info['file']}: {info['frequency']} (diff: {info['difference_seconds']:.1f}s)\n"
Expand Down Expand Up @@ -2142,9 +2141,9 @@ def _calculate_monthly_bounds(time_values, calendar: str, is_cftime: bool):
bounds[i, 0] = np.datetime64(f"{year:04d}-{month:02d}-01")
# End of month
if month == 12:
bounds[i, 1] = np.datetime64(f"{year+1:04d}-01-01")
bounds[i, 1] = np.datetime64(f"{year + 1:04d}-01-01")
else:
bounds[i, 1] = np.datetime64(f"{year:04d}-{month+1:02d}-01")
bounds[i, 1] = np.datetime64(f"{year:04d}-{month + 1:02d}-01")

return bounds

Expand Down Expand Up @@ -2194,7 +2193,7 @@ def _calculate_yearly_bounds(time_values, calendar: str, is_cftime: bool):
for i, t in enumerate(time_values):
year = np.datetime64(t, "Y").astype(int) + 1970
bounds[i, 0] = np.datetime64(f"{year:04d}-01-01")
bounds[i, 1] = np.datetime64(f"{year+1:04d}-01-01")
bounds[i, 1] = np.datetime64(f"{year + 1:04d}-01-01")

return bounds

Expand Down
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