Wombatmid nosc#87

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pearseb wants to merge 14 commits intomainfrom

Commits on Mar 25, 2026

* Nominal oxidation state of carbon in DOM added as inert tracer

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* NOSDOC now a tracer affected by all sources and sinks of DOC

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* Removed pprod_gross and all references to this uncessary diagnostic

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* Variable yields of bacteria computed from NOSDOC and then computed in the code, rather than relying on input parameters

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* Temporary update to NOSDOC tracer and associated parameters to make it vary between 0 and 1, rather than -1 and 0, since we are having issues initialising the field at -1

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* Added ceiling to bacterial yield on DOC that cannot be more than 80% of the max yield on DON

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Add hard ceiling on bacterial growth yield on DON over 90%.

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Changes for fortitude
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Some major updates to WOMBATmid. Making it consistent with the documentation. More to come.

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WOMBATmid: add variable declaration for "theta_opt"

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Changes to WOMBATmid:

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Slight changes to ensure WOMBATmid compiles... just inconsistencies in some of the variable names causing problems

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- removed a number of unused diagnostics

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Changes for fortitude
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