Wombatmid docs#94

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pearseb wants to merge 60 commits intomainfrom

Commits on Mar 25, 2026

Create WOMBATmid_update_from_source.md

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Made first additions to WOMBAT-mid

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Revise WOMBATmid update_from_source documentation

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Updated:

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Updates to WOMBAT-mid documentation Steps 1-7. Steps 8-20 still required

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Iron chemistry and silicic acid uptake completed

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Completed steps 10 - 23. Large additions here.

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small corrections. Seeing if the pages render properly on html.

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Trying \leftarrow rather than ← in my markdown for rendering purposes

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Trying \mathrm{} for inline $Si(OH)_{4}$ rendering

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Okay, now trying the Si(OH)<sub>4</sub> outside of math equations

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Testing \mathrm{} within inline equations for silicic acid

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New test of equations to get rendering to work

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New test for rendering

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new test for rendering

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New test for rendering

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Changing the chemical formula of Si(OH)4 to H4SiO4

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Corrected all instances of NH4, N2O, NO3 and O2 to use the <sub>x</sub> diction and also corrected all Si(OH)_{4} to use H4SiO4 in equations, which appears to render properly

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Fix of $N_{2}$O that caused rendering of all equations beyond it to fail (I think)

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Reorganise WOMBATmid docs
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Trying \begin{align} for equations

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Pushing for the hell of it

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Testing \begin{align}

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Added \begin{align} thorughout. Checking effect on tracer tendency calculations

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Test of align

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Trying \aligned

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Trying without $$ around \align

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Removing $$ around \begin{align} appears to work. Testing with just $ around

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Testing more with just $ around the \begin{align}

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Doesn't work with just $ around. Removing $

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Corrected up to step 15

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Adding <br> to the end of - statements under where

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added <br> to all where statements

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Made all where statements in italics and trying to correct tracer tendencies

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Issues with no3 tracer tendencies equation

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Replaced all ← and → with \leftarrow and \rightarrow

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Trying a new format for the tracer tendencies

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Test

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test

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Testing aligned for tracer tendencies

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New test in tracer tendencies

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New test

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trying & on different side of = sign

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Trying wihtout \left( and \right)

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Okay, the \left( and \right) parentheses appears to be the big issue

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Trying $$ around \align

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Playing now with tracer tendencies line breaks for readability

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Making sure that & only follows a //

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New test of tracer tendencies rendering

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Iron tracer tendency

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Finished the tracer tendencies

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All equations should render now

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Corrected some equations without \\

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Correction to equations

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Cleaning up the equations

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Correcting the equations

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Added \quad to the RHS of all equations

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Altered N2O production by ammonia oxidizers

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Edits to the new N2o production from AOA

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Small error

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