Auto update dev-preindustrial+concentrations to use access-esm1p6/pr178-1

config.yaml

@@ -1,162 +1,102 @@
-# A tutorial for running ACCESS ESM1.5 can be found at
-# https://access-hive.org.au/models/run-a-model/run-access-esm
-# Full details about the payu configuration settings are available at
-# https://payu.readthedocs.io/en/latest/config.html
-
-
-# PBS configuration
-
-# If submitting to a different project to your default, uncomment line below
-# and replace PROJECT_CODE with appropriate code. This may require setting shortpath
-# project: PROJECT_CODE
-
-# Force payu to always find, and save, files in this scratch project directory
-# shortpath: /scratch/PROJECT_CODE
-
-# Note: if laboratory is relative path, it is relative to shortpath/$USER
-laboratory: access-esm
-
-jobname: pre-industrial
-queue: normalsr
-walltime: 2:30:00
-jobfs: 1500MB
-
-platform:
-  nodesize: 104
-  nodemem: 512
-
-# Modules for loading model executables
-modules:
-  use:
-      - /g/data/vk83/modules
-  load:
-      - access-esm1p6/2025.12.000
-
-# Model configuration
-model: access-esm1.6
-
-submodels:
-    - name: atmosphere
-      model: um
-      ncpus: 256
-      exe: um_hg3.exe
-      input:
-        # Aerosols
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/OCFF_1850_cmip7.anc
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/BC_1850_cmip7.anc
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/scycl_1850_cmip7.anc
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/Bio_1850_cmip7.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96
-        # Forcing
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/forcing/global.N96/2025.12.09/ozone_1850_cmip7.anc
-        # Land
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2025.11.18/Ndep_1850_cmip7.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/vegetation/global.N96/2025.08.29/cable_vegfunc_N96.anc
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.08.29/modis_phenology_csiro_13evergreen.txt
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.11.18/pftlookup_cable3_OctB_update.csv
-        # Spectral
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3
-        # STASH
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/stash/2025.12.19/
-
-    - name: ocean
-      model: mom
-      ncpus: 240
-      exe: mom5_access_cm 
-      input:
-        # Biogeochemistry
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/biogeochemistry/global.1deg/2025.09.22/SFe_Hamiltonetal2020_monthly_clim.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc
-        # Tides
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc
-        # Shortwave
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/shortwave_penetration/global.1deg/2025.06.23/ssw_atten_depth.nc
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/grid_spec.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_mosaic.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_hgrid.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/bathymetry/global.1deg/2025.07.29/topog.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/vertical/global.1deg/2025.07.29/ocean_vgrid.nc
-
-    - name: ice
-      model: cice5
-      ncpus: 12
-      exe: cice_access-esm1.6_360x300_12x1_12p.exe
-      input:
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/kmt.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/grid.nc
-        # Iceberg flux
-        - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/share/ice/iceberg/global.1deg/2025.09.16/lice_discharge_iceberg.nc
-
-    - name: coupler
-      model: oasis
-      ncpus: 0
-      input:
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/grids.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/areas.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc
-        # Remapping weights
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_DESTAREA.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc
-
-# Collation
-collate:
-    enable: false
-
-restart: /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/restart/2025.12.22
-
-# Timing controls
 calendar:
-    runtime:
-        years: 1
-        months: 0
-        days: 0
-
-runspersub: 1
-
-# Misc
-restart_freq: 10YS
-
-runlog: true
+  runtime:
+    days: 0
+    months: 0
+    years: 1
+collate:
+  enable: false
+jobfs: 1500MB
+jobname: pre-industrial
+laboratory: access-esm
 manifest:
   reproduce:
-    exe: true
+    exe: false
     input: true
-
-
-stacksize: unlimited
-qsub_flags: -W umask=027
+model: access-esm1.6
+modules:
+  load:
+  - access-esm1p6/pr178-12
+  use:
+  - /g/data/vk83/modules
+  - /g/data/vk83/prerelease/modules
 mpi:
   flags:
-    - --mca mpi_yield_when_idle true
+  - --mca mpi_yield_when_idle true
 payu_minimum_version: 1.2.0
-
-# Sync options for automatically copying data from ephemeral scratch space to
-# longer term storage
-sync:
-    enable: False # set path below and change to true
-    restarts: True
-    path: null # Set to location on /g/data or a remote server and path (rsync syntax)
-
-# If a postscript included (such as the automated netcdf conversion), the latest output and restart files will not
-# be automatically synced at the end of a run. To sync the latest output after a postscript has completed,
-#  manually run `payu sync` from the command line.
-
-# userscripts:
-
+platform:
+  nodemem: 512
+  nodesize: 104
 postscript: -v PAYU_CURRENT_OUTPUT_DIR,PROJECT  -lstorage=${PBS_NCI_STORAGE} ./scripts/NetCDF-conversion/UM_conversion_job.sh
+qsub_flags: -W umask=027
+queue: normalsr
+restart: /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/restart/2025.12.22
+restart_freq: 10YS
+runlog: true
+runspersub: 1
+stacksize: unlimited
+submodels:
+- exe: um_hg3.exe
+  input:
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/OCFF_1850_cmip7.anc
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/BC_1850_cmip7.anc
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/scycl_1850_cmip7.anc
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/Bio_1850_cmip7.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/forcing/global.N96/2025.12.09/ozone_1850_cmip7.anc
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2025.11.18/Ndep_1850_cmip7.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/vegetation/global.N96/2025.08.29/cable_vegfunc_N96.anc
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.08.29/modis_phenology_csiro_13evergreen.txt
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.11.18/pftlookup_cable3_OctB_update.csv
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/stash/2025.12.19/
+  model: um
+  name: atmosphere
+  ncpus: 256
+- exe: mom5_access_cm
+  input:
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/biogeochemistry/global.1deg/2025.09.22/SFe_Hamiltonetal2020_monthly_clim.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/shortwave_penetration/global.1deg/2025.06.23/ssw_atten_depth.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/grid_spec.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_mosaic.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_hgrid.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/bathymetry/global.1deg/2025.07.29/topog.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/vertical/global.1deg/2025.07.29/ocean_vgrid.nc
+  model: mom
+  name: ocean
+  ncpus: 240
+- exe: cice_access-esm1.6_360x300_12x1_12p.exe
+  input:
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/kmt.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/grid.nc
+  - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/share/ice/iceberg/global.1deg/2025.09.16/lice_discharge_iceberg.nc
+  model: cice5
+  name: ice
+  ncpus: 12
+- input:
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/grids.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/areas.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_DESTAREA.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc
+  model: oasis
+  name: coupler
+  ncpus: 0
+sync:
+  enable: false
+  path: null
+  restarts: true
+walltime: 9000