Skip to content

1deg_jra55_ryf_bgc: test MOM5 spack-package changes #187

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
dougiesquire wants to merge 3 commits into from
Closed

1deg_jra55_ryf_bgc: test MOM5 spack-package changes #187

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
77f4c63
Use prerelease access-om2-bgc/pr22-2
dougiesquire Apr 16, 2025
13055d7
Use prerelease access-om2-bgc/pr22-3
dougiesquire Apr 17, 2025
f85815d
Use prerelease access-om2-bgc/pr22-4
dougiesquire Apr 23, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
78 changes: 42 additions & 36 deletions config.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,58 +20,64 @@ sync:
path: null # Set to location on /g/data or a remote server and path (rsync syntax)

# Model configuration
modules:
use:
- /g/data/vk83/prerelease/modules
load:
- access-om2-bgc/pr22-4

name: common
model: access-om2
input:
- /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc
- /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc
- /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc
- /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc
- /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc
- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc
- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc
- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc
- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc
- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc
submodels:
- name: atmosphere
model: yatm
exe: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26_2023.10.26-xarvbgn4yf4mxy5hxixm4gfbp7rbzsfh/bin/yatm.exe
exe: yatm.exe
input:
- /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc
- /g/data/vk83/experiments/inputs/JRA-55/RYF/v1-4/data
- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc
- /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-4/data
ncpus: 1

- name: ocean
model: mom
exe: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.2024.06.27_2024.06.27-q6bpwu526xql2gm6dbpnvf36yvnfxynj/bin/fms_ACCESS-OM-BGC.x
exe: fms_ACCESS-OM-BGC.x
input:
- /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/bgc_param.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_iaf.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_ryf.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc.res.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc_sediment.res.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/dust.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table
- /g/data/vk83/experiments/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc
- /g/data/vk83/experiments/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/bgc_param.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_iaf.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_ryf.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc.res.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc_sediment.res.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/dust.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table
- /g/data/vk83/configurations/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc
- /g/data/vk83/configurations/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc
ncpus: 216

- name: ice
model: cice5
exe: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/cice5-git.2023.10.19_2023.10.19-4tttbvaxg4afg3hjcrfaah6qngp43e5e/bin/cice_auscom_360x300_24x1_24p.exe
exe: cice_auscom_360x300_24x1_24p.exe
input:
- /g/data/vk83/experiments/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc
- /g/data/vk83/experiments/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc
- /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/i2o.nc
- /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/o2i.nc
- /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc
- /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc
- /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc
- /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc
- /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/i2o.nc
- /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/o2i.nc
- /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc
- /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc
ncpus: 24

# Collation
Expand All @@ -81,7 +87,7 @@ collate:
mem: 30GB
ncpus: 4
queue: normal
exe: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.2024.06.27_2024.06.27-q6bpwu526xql2gm6dbpnvf36yvnfxynj/bin/mppnccombine.spack
exe: mppnccombine.spack

manifest:
reproduce:
Expand Down
18 changes: 9 additions & 9 deletions manifests/exe.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,17 +2,17 @@ format: yamanifest
version: 1.0
---
work/atmosphere/yatm.exe:
fullpath: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26_2023.10.26-xarvbgn4yf4mxy5hxixm4gfbp7rbzsfh/bin/yatm.exe
fullpath: /g/data/vk83/prerelease/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26_access-om2-x7dud7bdjikzmharfzc5orm5jjlfanja/bin/yatm.exe
hashes:
binhash: 4f968e4cf41d6e51cf3cd59bd070e393
md5: eccfeb3f49d620b4e5f6b8c2bc5d8c36
binhash: bdc01f66fe3e78ffc140be76ed3223b0
md5: ed8e7783a5279a358fb7e24221e3e350
work/ice/cice_auscom_360x300_24x1_24p.exe:
fullpath: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/cice5-git.2023.10.19_2023.10.19-4tttbvaxg4afg3hjcrfaah6qngp43e5e/bin/cice_auscom_360x300_24x1_24p.exe
fullpath: /g/data/vk83/prerelease/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/cice5-git.2023.10.19_access-om2-4cy245xma7xr7x37a7sbavycyhiikbjl/bin/cice_auscom_360x300_24x1_24p.exe
hashes:
binhash: 6d1d90c6ba37b4dbbd3173fab98d32d1
md5: 1ee0b63f488f38619cba0000586bc0c4
binhash: 432d10c9f10536a6e30b54ed2d60282a
md5: 0e25017af3916f930ea35d4e4d815798
work/ocean/fms_ACCESS-OM-BGC.x:
fullpath: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.2024.06.27_2024.06.27-q6bpwu526xql2gm6dbpnvf36yvnfxynj/bin/fms_ACCESS-OM-BGC.x
fullpath: /g/data/vk83/prerelease/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.dev-2025.04.001_legacy-access-om2-bgc-amedzjfe46xhcfly6mcgh5myy3o3nym7/bin/fms_ACCESS-OM-BGC.x
hashes:
binhash: efb3edca9d546723c29f92f7c8eb1856
md5: 1297c30c1b945e55fa08acdeb301b3d0
binhash: 9fcfdfee203f7d4ae591b0ab8e56d89b
md5: aa74b65401f35babc47eb5b845a1a2b9
Loading
Loading