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wrap and core ants image local working
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ncullen93
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May 8, 2024
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| { | ||
| "files.associations": { | ||
| "iosfwd": "cpp", | ||
| "__bit_reference": "cpp", | ||
| "__bits": "cpp", | ||
| "__config": "cpp", | ||
| "__debug": "cpp", | ||
| "__errc": "cpp", | ||
| "__functional_base": "cpp", | ||
| "__hash_table": "cpp", | ||
| "__locale": "cpp", | ||
| "__mutex_base": "cpp", | ||
| "__node_handle": "cpp", | ||
| "__nullptr": "cpp", | ||
| "__split_buffer": "cpp", | ||
| "__string": "cpp", | ||
| "__threading_support": "cpp", | ||
| "__tuple": "cpp", | ||
| "algorithm": "cpp", | ||
| "array": "cpp", | ||
| "atomic": "cpp", | ||
| "bit": "cpp", | ||
| "bitset": "cpp", | ||
| "cctype": "cpp", | ||
| "chrono": "cpp", | ||
| "clocale": "cpp", | ||
| "cmath": "cpp", | ||
| "complex": "cpp", | ||
| "cstdarg": "cpp", | ||
| "cstddef": "cpp", | ||
| "cstdint": "cpp", | ||
| "cstdio": "cpp", | ||
| "cstdlib": "cpp", | ||
| "cstring": "cpp", | ||
| "ctime": "cpp", | ||
| "cwchar": "cpp", | ||
| "cwctype": "cpp", | ||
| "deque": "cpp", | ||
| "exception": "cpp", | ||
| "fstream": "cpp", | ||
| "functional": "cpp", | ||
| "initializer_list": "cpp", | ||
| "iomanip": "cpp", | ||
| "ios": "cpp", | ||
| "iostream": "cpp", | ||
| "istream": "cpp", | ||
| "iterator": "cpp", | ||
| "limits": "cpp", | ||
| "locale": "cpp", | ||
| "memory": "cpp", | ||
| "mutex": "cpp", | ||
| "new": "cpp", | ||
| "optional": "cpp", | ||
| "ostream": "cpp", | ||
| "ratio": "cpp", | ||
| "sstream": "cpp", | ||
| "stack": "cpp", | ||
| "stdexcept": "cpp", | ||
| "streambuf": "cpp", | ||
| "string": "cpp", | ||
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| "system_error": "cpp", | ||
| "tuple": "cpp", | ||
| "type_traits": "cpp", | ||
| "typeinfo": "cpp", | ||
| "unordered_map": "cpp", | ||
| "utility": "cpp", | ||
| "vector": "cpp", | ||
| "random": "cpp", | ||
| "__tree": "cpp", | ||
| "any": "cpp", | ||
| "cfenv": "cpp", | ||
| "condition_variable": "cpp", | ||
| "csetjmp": "cpp", | ||
| "csignal": "cpp", | ||
| "future": "cpp", | ||
| "list": "cpp", | ||
| "map": "cpp", | ||
| "numeric": "cpp", | ||
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| "valarray": "cpp", | ||
| "variant": "cpp", | ||
| "*.in": "cpp" | ||
| } | ||
| } |
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| cmake_minimum_required(VERSION 3.16.3...3.26) | ||
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| project(ants LANGUAGES CXX) | ||
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| set(CMAKE_POSITION_INDEPENDENT_CODE ON) | ||
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| # Try to import all Python components potentially needed by nanobind | ||
| find_package(Python 3.8 | ||
| REQUIRED COMPONENTS Interpreter Development.Module | ||
| OPTIONAL_COMPONENTS Development.SABIModule) | ||
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| # Import nanobind through CMake's find_package mechanism | ||
| find_package(nanobind CONFIG REQUIRED) | ||
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| # TODO: make this run only if ITK + ANTs are not already built (for now: comment these 2 lines out to quickly rebuild antspy) | ||
| # TODO: make this handle different OS either here or within the configure script | ||
| # TODO: move this outside of CMakeLists.txt like in the old antspy (issue: how to run scripts from pyproject.toml?) | ||
| # otherwise you have to comment it out during development | ||
| #execute_process(COMMAND bash ${PROJECT_SOURCE_DIR}/scripts/configure_ITK.sh) | ||
| #execute_process(COMMAND bash ${PROJECT_SOURCE_DIR}/scripts/configure_ANTs.sh) | ||
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| # ITK | ||
| set(ITK_DIR "./itkbuild") | ||
| find_package(ITK REQUIRED) | ||
| include(${ITK_USE_FILE}) | ||
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| # ANTS | ||
| add_library(antsUtilities STATIC src/antscore/antsUtilities.cxx src/antscore/antsCommandLineOption.cxx src/antscore/antsCommandLineParser.cxx src/antscore/ReadWriteData.cxx src/antscore/ANTsVersion.cxx) | ||
| add_library(registrationUtilities STATIC src/antscore/antsRegistrationTemplateHeader.cxx | ||
| src/antscore/antsRegistration2DDouble.cxx src/antscore/antsRegistration2DFloat.cxx | ||
| src/antscore/antsRegistration3DDouble.cxx src/antscore/antsRegistration3DFloat.cxx | ||
| src/antscore/antsRegistration4DDouble.cxx src/antscore/antsRegistration4DFloat.cxx) | ||
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| add_library(imageMathUtilities STATIC src/antscore/ImageMathHelper2D.cxx src/antscore/ImageMathHelper3D.cxx src/antscore/ImageMathHelper4D.cxx) | ||
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| # this may not be needed | ||
| target_link_libraries(antsUtilities ${ITK_LIBRARIES}) | ||
| target_link_libraries(registrationUtilities ${ITK_LIBRARIES}) | ||
| target_link_libraries(imageMathUtilities ${ITK_LIBRARIES}) | ||
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| nanobind_add_module( | ||
| lib | ||
| STABLE_ABI | ||
| NB_STATIC | ||
| src/main.cpp | ||
| src/antscore/antsAffineInitializer.cxx | ||
| src/antscore/antsApplyTransforms.cxx | ||
| src/antscore/antsApplyTransformsToPoints.cxx | ||
| src/antscore/antsJointFusion.cxx | ||
| src/antscore/antsRegistration.cxx | ||
| src/antscore/Atropos.cxx | ||
| src/antscore/AverageAffineTransform.cxx | ||
| src/antscore/AverageAffineTransformNoRigid.cxx | ||
| src/antscore/CreateJacobianDeterminantImage.cxx | ||
| src/antscore/DenoiseImage.cxx | ||
| src/antscore/iMath.cxx | ||
| src/antscore/KellyKapowski.cxx | ||
| src/antscore/LabelClustersUniquely.cxx | ||
| src/antscore/LabelGeometryMeasures.cxx | ||
| src/antscore/N3BiasFieldCorrection.cxx | ||
| src/antscore/N4BiasFieldCorrection.cxx | ||
| src/antscore/ResampleImage.cxx | ||
| src/antscore/ThresholdImage.cxx | ||
| src/antscore/TileImages.cxx | ||
| ) | ||
| target_link_libraries(lib PRIVATE ${ITK_LIBRARIES} antsUtilities registrationUtilities imageMathUtilities) | ||
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| # Install directive for scikit-build-core | ||
| install(TARGETS lib LIBRARY DESTINATION ants) |
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| __version__ = '0.5.2' | ||
| __version__ = '0.6.0' | ||
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| from .core import * | ||
| from .utils import * | ||
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