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  1. KGD KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    R 21 16

  2. GUS-LD GUS-LD Public

    Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

    R 4 2

  3. data_prism data_prism Public

    R 1

  4. tardis tardis Public

    tardis

    Python 1

  5. Benchmarks Benchmarks Public

    This repository includes benchmarks that will be used to ensure the fit for purpose and to measure the performance of the Scientific Compute Platform in AgResearch.

    R 1

  6. batch_qiime_prism batch_qiime_prism Public

    runs batch qiime-based clustering and annotation

    Shell 1

Repositories

Showing 10 of 48 repositories
  • gbs_prism Public

    refactored GBS processing

    AgResearch/gbs_prism’s past year of commit activity
    Python 0 0 0 0 Updated Jan 30, 2025
  • redun.nix Public

    A flake package for redun

    AgResearch/redun.nix’s past year of commit activity
    Nix 0 0 0 0 Updated Jan 30, 2025
  • bbmap.nix Public

    Nix flake for BBMap, a short-read aligner for DNA and RNA-seq data

    AgResearch/bbmap.nix’s past year of commit activity
    Nix 0 MIT 0 0 0 Updated Jan 26, 2025
  • KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    AgResearch/KGD’s past year of commit activity
    R 21 GPL-2.0 16 6 0 Updated Jan 19, 2025
  • GBSX Public Forked from GenomicsCoreLeuven/GBSX

    GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments

    AgResearch/GBSX’s past year of commit activity
    Java 0 GPL-3.0 6 0 0 Updated Jan 15, 2025
  • tassel3 Public

    Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.

    AgResearch/tassel3’s past year of commit activity
    Java 0 LGPL-2.1 0 0 0 Updated Jan 15, 2025
  • bcl-convert.nix Public

    Nix Flake for Illumina BCL Convert

    AgResearch/bcl-convert.nix’s past year of commit activity
    Nix 0 MIT 0 0 0 Updated Dec 2, 2024
  • cutadapt.nix Public

    Flake for cutadapt which removes adapter sequences from sequencing reads

    AgResearch/cutadapt.nix’s past year of commit activity
    Nix 0 MIT 0 0 0 Updated Nov 6, 2024
  • wgs_prism Public

    Production and q/c for wgs sequencing runs

    AgResearch/wgs_prism’s past year of commit activity
    Python 0 1 0 0 Updated Oct 24, 2024
  • snakemake-playpen Public

    Learning SnakeMake

    AgResearch/snakemake-playpen’s past year of commit activity
    Nix 0 0 0 1 Updated Oct 8, 2024

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