Reviewer response 2 #84
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vianamp
approved these changes
Mar 27, 2025
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This PR adds analysis requested by reviewer in round 2
Classification analysis
Run:
python src/br/analysis/run_classification.py --save_path "./outputs_npm1/" --embeddings_path "./morphology_appropriate_representation_learning/model_embeddings/npm1/" --dataset_name "npm1"LDA drug data analysis
Run
python src/br/analysis/run_drugdata_analysis.py --save_path "./outputs_npm1_perturb/" --embeddings_path "./morphology_appropriate_representation_learning/model_embeddings/npm1_perturb/" --dataset_name "npm1_perturb" --raw_path "./NPM1_single_cell_drug_perturbations/"