@@ -386,28 +386,30 @@ python Rhapso/pipelines/ray/aws/alignment_pipeline.py
386386| `max_plateauwidth` | Early stopping | Stagnation window before stopping on no improvement | 200 |
387387
388388```
389+ <br >
389390
390391### Fusion
391392```
392393| Parameter | Feature / step | What it does | Typical range |
393394| :------------------- | :------------- | :----------------------------------------------------------------- | :------------------ |
394- | `block_size` | Optimization | Cell size per task xyz | 256, 256, 256 |
395- | `intensity_range` | Optimization | Range of intensity values | 0, 65535 |
396- | `block_scale` | Optimization | Scaling of cell size | 2, 2, 1 |
397- | `overlap_strategy` | Early stopping | Strategy when more than 1 view contributes also lowest_view_wins | avg_blend |
395+ | `block_size` | Fusion opt | Cell size per task xyz | 256, 256, 256 |
396+ | `intensity_range` | Fusion config | Range of intensity values | 0, 65535 |
397+ | `block_scale` | Fusion opt | Scaling of cell size | 2, 2, 1 |
398+ | `overlap_strategy` | Edge handling | Strategy when more than 1 view contributes also lowest_view_wins | avg_blend |
398399
399400```
401+ <br >
400402
401403### Multiscale
402404```
403- | Parameter | Feature / step | What it does | Typical range |
404- | :---------------------- | :------------- | : ----------- ------------------------------------------------------ | :------------------ |
405- | `multiscale_chunk_size` | Graph pruning | Output cell size | 128, 128, 128 |
406- | `voxel_size` | Graph pruning | Voxel size of data in zyx | 1.0, .748, .748 |
407- | `n_lvls` | Optimization | Num levels to multiscale including base level | 7 |
408- | `scale_factor` | Optimization | Scaling factor per level for entropy | [2,2,2],...num lvls |
409- | `target_block_size_mb` | Optimization | Per worker block size | 256 |
410- | `base_level` | Early stopping | Existing base res level | 0 |
405+ | Parameter | Feature / step | What it does | Typical range |
406+ | :---------------------- | :----------------------| : ------------------------------------------------------ | :------------------ |
407+ | `multiscale_chunk_size` | Optimization | Output cell size | 128, 128, 128 |
408+ | `voxel_size` | Data config | Voxel size of data in zyx | 1.0, .748, .748 |
409+ | `n_lvls` | Output scale handling | Num levels to multiscale including base level | 7 |
410+ | `scale_factor` | Entropy config | Scaling factor per level for entropy | [2,2,2],...num lvls |
411+ | `target_block_size_mb` | Optimization | Per worker block size | 256 |
412+ | `base_level` | Output scale config | Existing base res level | 0 |
411413
412414```
413415
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