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Merge pull request #212 from AllenNeuralDynamics/seanfite-alleninstitute-patch-1
Update README.md
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README.md

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@@ -386,28 +386,30 @@ python Rhapso/pipelines/ray/aws/alignment_pipeline.py
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| `max_plateauwidth` | Early stopping | Stagnation window before stopping on no improvement | 200 |
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```
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<br>
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### Fusion
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```
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| Parameter | Feature / step | What it does | Typical range |
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| :------------------- | :------------- | :----------------------------------------------------------------- | :------------------ |
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| `block_size` | Optimization | Cell size per task xyz | 256, 256, 256 |
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| `intensity_range` | Optimization | Range of intensity values | 0, 65535 |
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| `block_scale` | Optimization | Scaling of cell size | 2, 2, 1 |
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| `overlap_strategy` | Early stopping | Strategy when more than 1 view contributes also lowest_view_wins | avg_blend |
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| `block_size` | Fusion opt | Cell size per task xyz | 256, 256, 256 |
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| `intensity_range` | Fusion config | Range of intensity values | 0, 65535 |
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| `block_scale` | Fusion opt | Scaling of cell size | 2, 2, 1 |
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| `overlap_strategy` | Edge handling | Strategy when more than 1 view contributes also lowest_view_wins | avg_blend |
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```
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<br>
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### Multiscale
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```
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| Parameter | Feature / step | What it does | Typical range |
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| :---------------------- | :------------- | :----------------------------------------------------------------- | :------------------ |
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| `multiscale_chunk_size` | Graph pruning | Output cell size | 128, 128, 128 |
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| `voxel_size` | Graph pruning | Voxel size of data in zyx | 1.0, .748, .748 |
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| `n_lvls` | Optimization | Num levels to multiscale including base level | 7 |
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| `scale_factor` | Optimization | Scaling factor per level for entropy | [2,2,2],...num lvls |
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| `target_block_size_mb` | Optimization | Per worker block size | 256 |
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| `base_level` | Early stopping | Existing base res level | 0 |
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| Parameter | Feature / step | What it does | Typical range |
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| :---------------------- | :----------------------| :------------------------------------------------------ | :------------------ |
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| `multiscale_chunk_size` | Optimization | Output cell size | 128, 128, 128 |
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| `voxel_size` | Data config | Voxel size of data in zyx | 1.0, .748, .748 |
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| `n_lvls` | Output scale handling | Num levels to multiscale including base level | 7 |
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| `scale_factor` | Entropy config | Scaling factor per level for entropy | [2,2,2],...num lvls |
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| `target_block_size_mb` | Optimization | Per worker block size | 256 |
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| `base_level` | Output scale config | Existing base res level | 0 |
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```
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