v0.13.5

Breaking changes

• Rename --cluster-retries to --retries (#190)

What's Changed

• Rename --cluster-retries to --retries (#190)
• More accessible outputs including centralised bins folder and improved logging (#191)
• Add --dry-run as alternative to --dryrun
• Added check_binchicken_completion.py script to extras folder. It reports the status of Aviary assembly/recovery.

Full Changelog: v0.13.4...v0.13.5

v0.13.4

Fix extern error type

Full Changelog: v0.13.3...v0.13.4

v0.13.3

Fixes to binchicken build env variable setup.

Full Changelog: v0.13.2...v0.13.3

v0.13.2

What's Changed

• Better error handling for snakemake rules, should print the log of the erroring rule and not allow snakemake to delete them with retries (#186)
• Fix build without args (#187)
• Minor bug fixes

Full Changelog: v0.13.1...v0.13.2

v0.13.1

What's Changed

• build: set env variables in the main pixi env too
• Update Aviary to fix prepare_binning_files_split bug

Full Changelog: v0.13.0...v0.13.1

v0.13.0

What's Changed

• Switch to pixi for handling dependency environments (#175)
• Split preclustering into chunks to improve memory usage (#176)
• Better retries for cluster graph to further reduce combinatorial explosions with subsequent attempts (#179)
• Handle Bin Chicken vs SingleM sample naming properly (#181)

Full Changelog: v0.12.11...v0.13.0

v1.0.0beta1

Testing pixi install through conda for upcoming v1.0.0.

What's Changed

• split preclustering into chunks by @AroneyS in #176
• Switch to pixi by @AroneyS in #175

Full Changelog: v0.12.11...v1.0.0beta1

v0.12.11

revert to secret pypi

v0.12.10

pypi?

v0.12.9

another pypi release....