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AAI-184 Initial Auth0 integration #1

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AAI-184 Initial Auth0 integration #1

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marius-mather
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Adds steps to the login pipeline to decode the access token and then add roles based on those found in the access token.

Outcome

After logging in via Auth0, the user will have any galaxy related roles (beginning with Galaxy/) added to their user. The roles currently have to be created already in Galaxy.

Not implemented

This PR doesn't cover a range of potential/desired features of the the Auth0 integration, e.g.

  • Removing roles that are no longer present in the auth0 data
  • Handling roles vs. groups - need clarification on how this will work

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@amandazhuyilan amandazhuyilan left a comment

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Looks great - will reference this in the BPA-DB auth0 integration too

mvdbeek and others added 30 commits May 16, 2025 11:06
…in_setting

Only show custom tool editor in activity bar settings when user has access
The metadata are in the "default" (not "legacy") format, so need to
use a newer tool profile.

Also:
- Use CDATA and `&&` in command
[24.0] Fall back to name in job summary if no input label given
…dynamic_tools

Fix job rerun for dynamic tools
…ata-CONVERTER_tar_to_directory

Fix tool-provided metadata for CONVERTER_tar_to_directory
…ributors have agreed.

$ git log config/plugins/webhooks/demo/tour_generator/ | grep Author | sort -u
Author: Aysam Guerler <[email protected]>
Author: Dannon Baker <[email protected]>
Author: Evgeny Anatskiy <[email protected]>
Author: John Chilton <[email protected]>
Author: Marius van den Beek <[email protected]>
Author: Mason Houtz <[email protected]>
Author: Nicola Soranzo <[email protected]>

galaxyproject#13923 (Aysam Guerler <[email protected]>)
galaxyproject#14540 (Dannon Baker <[email protected]>)
galaxyproject#16970 (review) (Evgeny Anatskiy <[email protected]>)
galaxyproject#14540 (John Chilton <[email protected]>)
galaxyproject#14540 (Marius van den Beek <[email protected]>)
galaxyproject#12351 (Mason Houtz <[email protected]>)
galaxyproject#18423 (Nicola Soranzo <[email protected]>)
…rs have agreed.

$ git log config/plugins/visualizations/annotate_image/ | grep Author | sort -u
Author: Anup Kumar <[email protected]>
Author: Aysam Guerler <[email protected]>
Author: Dannon Baker <[email protected]>
Author: Mahendra Paipuri <[email protected]>

galaxyproject#14540 (Anup Kumar <[email protected]>)
galaxyproject#13923 (Aysam Guerler <[email protected]>)
galaxyproject#14540 (Dannon Baker <[email protected]>)
galaxyproject#16119 (Mahendra Paipuri <[email protected]>)
…utors have agreed.

$ git log config/plugins/visualizations/fits_graph_viewer/ | grep Author | sort -u
Author: Amirhossein Naghsh Nilchi <[email protected]>
Author: Aysam Guerler <[email protected]>
Author: Dannon Baker <[email protected]>
Author: francoismg <[email protected]>

galaxyproject#20183 (Amirhossein Naghsh Nilchi <[email protected]>)
galaxyproject#13923 (Aysam Guerler <[email protected]>)
galaxyproject#14540 (Dannon Baker <[email protected]>)
galaxyproject#19003 (francoismg <[email protected]>)
…ave agreed.

$ git log -- config/plugins/visualizations/jqplot/jqplot_bar/ | grep Author | sort -u
Author: Assunta DeSanto <[email protected]>
Author: Aysam Guerler <[email protected]>
Author: Dannon Baker <[email protected]>

galaxyproject#11799 (Assunta DeSanto <[email protected]>)
galaxyproject#13923 (Aysam Guerler <[email protected]>)
galaxyproject#14540 (Dannon Baker <[email protected]>)
…eed.

$ git log -- config/plugins/visualizations/msa/ | grep Author | sort -u
Author: Aysam Guerler <[email protected]>
Author: Dannon Baker <[email protected]>
Author: Mahendra Paipuri <[email protected]>

galaxyproject#13923 (Aysam Guerler <[email protected]>)
galaxyproject#14540 (Dannon Baker <[email protected]>)
galaxyproject#16119 (Mahendra Paipuri <[email protected]>)
…e agreed.

$ git log -- config/plugins/visualizations/nvd3/nvd3_bar/ | grep Author | sort -u
Author: Aysam Guerler <[email protected]>
Author: Dannon Baker <[email protected]>

galaxyproject#13923 (Aysam Guerler <[email protected]>)
galaxyproject#14540 (Dannon Baker <[email protected]>)
$ git log -- config/plugins/visualizations/pv/ | grep Author | sort -u
Author: Aysam Guerler <[email protected]>
Author: Dannon Baker <[email protected]>
Author: Mahendra Paipuri <[email protected]>

galaxyproject#13923 (Aysam Guerler <[email protected]>)
galaxyproject#14540 (Dannon Baker <[email protected]>)
galaxyproject#16119 (Mahendra Paipuri <[email protected]>)
…ackage_dep_licenses

Update Javascript package licenses to MIT
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