Use correct indices of residues in Transformation #64
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Sorry I didn't catch this earlier together with #63. The documentation of
Transformation
states that its fieldsinds1
andinds2
store the indices of residuals that were used when superimposing structures. However, when residues were skipped due to differing amounts of atoms, the corresponding indices were still part ofinds1
andinds2
. This PR makes sure that this is no longer the case.