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Issues: BioinformaticsFMRP/TCGAbiolinks

discrepancy in number of samples
#458 opened Apr 19, 2021 by Xiaofei-git
Open
Update TCGAbiolinks handle new projects
#521 opened Jun 14, 2022 by tiagochst
Open
GDCprepare_clinic bug
#546 opened Sep 29, 2022 by todaroroad
Open 3
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259 Open 360 Closed
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Issues list

Issue when downloading DNA methylation data with GDCdownload
#642 opened Feb 28, 2025 by DanielJMullen
Error in GDCQuery_clinic("TCGA-PAAD")
#641 opened Feb 3, 2025 by ramyapurkanti
3
GDCquery_clinic not working for some TCGA projects
#640 opened Feb 2, 2025 by raygozag
2
GDCquery_clinic not working for TCGA projects
#639 opened Jan 31, 2025 by hnsc-a11y
13
Error running setdiff
#637 opened Dec 26, 2024 by Dr-Priyanka-Jain
Error in GDCprepare: Allele-specific Copy Number Segment - samples duplicated
#636 opened Sep 17, 2024 by sigven
test failure on ppc64el architecture
#635 opened Sep 10, 2024 by mr-c
GDCprepare() error: 'I couldn't find all the files from the query. Please check if the directory parameter is right or GDCdownload downloaded the samples'
#633 opened Jul 2, 2024 by maronem
TCGAanalyze_DEA: Error in names(x) <- value : 'names' attribute [7] must be the same length as the vector [1]
#632 opened Jun 20, 2024 by dBenedek
Installation
#630 opened Jun 9, 2024 by 4479917
GDCprepare Error adding clinical information to samples
#629 opened May 16, 2024 by IvanEllson
6
GEO:Error in left_join(): ! Can't join x$ID with y$ID due to incompatible types. ℹ x$ID is a <character>. ℹ y$ID is a <integer>.
#628 opened May 16, 2024 by zhihuawang2015
1
dplyr::bind_rows(): ! Can't combine ..368$Tumor_Seq_Allele2 and ..369$Tumor_Seq_Allele2 .One error problem occurred caused by data type during using GDCprepare to handle BRCA data
#627 opened Apr 24, 2024 by Lancelof2019
5
BRAF V600E mutation why turn into V640E mutaion in TCGA COAD cohort?
#624 opened Mar 23, 2024 by LULUCHIU
3
Clinical data for CTSP_DLBCL1 does not work
#622 opened Mar 15, 2024 by akauko
Why is there no proteomic data available in the CPTAC project?
#620 opened Mar 4, 2024 by CN-Geminghui
Potential Bug: GDC Prepare does not work for breast cancer data
#619 opened Feb 19, 2024 by fabianjkrueger
1
GDCdownload error: 'No such file or directory'
#618 opened Feb 17, 2024 by Mincana-Huang
1
No clinical data added to TARGET-NBL
#616 opened Jan 11, 2024 by AndriesDeKoker
4
Mabye a bug in TCGAanalyze_SurvivalKM
#615 opened Jan 11, 2024 by fw1121
6
How to Move the Legend in TCGAanalyze_SurvivalKM
#614 opened Jan 5, 2024 by sjroth
Test suite issue on armel, armhf and ppc64el architecture
#612 opened Dec 18, 2023 by tillea
1
CPTAC-3 GDCPrepare with scRNA-seq data
#611 opened Nov 17, 2023 by LeaLe88
1
Problem for merging two summarizedExperiments objects
#608 opened Nov 2, 2023 by NTajeddine
GDCprepare not working on Mac OS Sonoma
#606 opened Oct 21, 2023 by maxm-4
1
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