Merge pull request #407 from ncborcherding/dev

v2.0.6
BorchLab · Sep 19, 2024 · 3d6f326 · 3d6f326
2 parents d6dcf9e + ec48a31
commit 3d6f326
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: scRepertoire
 Title: A toolkit for single-cell immune receptor profiling
-Version: 2.0.5
+Version: 2.0.6
 Authors@R: c(
     person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "[email protected]"), 
     person(given = "Qile", family = "Yang", role = c("aut"), email = "[email protected]"), 

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,8 @@
+# scRepertoire VERSION 2.0.6
+
+## UNDERLYING CHANGES
+* Fixed issue with custom column headers for clones
+
 # scRepertoire VERSION 2.0.5
 
 ## UNDERLYING CHANGES

diff --git a/R/utils.R b/R/utils.R
@@ -360,12 +360,9 @@
 		"ctstrict" = "CTstrict"
 	)
 
-	x <- tolower(x)
-
-	if (!is.null(clonecall_dictionary[[x]])) {
-		return(clonecall_dictionary[[x]])
-	}
-	else {
+	if (!is.null(clonecall_dictionary[[tolower(x)]])) {
+		return(clonecall_dictionary[[tolower(x)]])
+	} else {
 		warning("A custom variable ", x, " will be used to call clones")
 		return(x)
 	}

diff --git a/tests/testthat/_snaps/StartractDiversity/startracdiversity-plot.new.svg b/tests/testthat/_snaps/StartractDiversity/startracdiversity-plot.new.svg
diff --git a/tests/testthat/_snaps/clonalOverlay/clonaloverlay-clonalproportion-plot.new.svg b/tests/testthat/_snaps/clonalOverlay/clonaloverlay-clonalproportion-plot.new.svg
diff --git a/tests/testthat/_snaps/clonalOverlay/clonaloverlay-plot.new.svg b/tests/testthat/_snaps/clonalOverlay/clonaloverlay-plot.new.svg
diff --git a/tests/testthat/_snaps/clonalRarefaction/clonalclonalrarefaction-h2-p3-plot.new.svg b/tests/testthat/_snaps/clonalRarefaction/clonalclonalrarefaction-h2-p3-plot.new.svg
diff --git a/tests/testthat/_snaps/clonalSizeDistribution/clonalsizedistribution-plot.new.svg b/tests/testthat/_snaps/clonalSizeDistribution/clonalsizedistribution-plot.new.svg