fix: migrate CHARLIE runtime activation to mamba-safe flow - #149

Merged

kopardev merged 20 commits into

mainfrom

fix/issue-147-mamba-init

Jun 12, 2026

Commits on Jun 5, 2026

fix(runtime): migrate CHARLIE activation to mamba-safe flow
kopardev
committed
9b47b16
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot]
committed
e0cc74a
fix(paths): replace gpfs CCBR base path with vf
kopardev
committed
bf97ac9
fix(config): make host/additives/viruses placeholders envsubst-compatible
kopardev
committed
8be54c5
fix(cli): default additives to blank when omitted
kopardev
committed
f85c985
fix(slurm): remove invalid ccr partition on biowulf
kopardev
committed
d079566
fix(slurm): force biowulf partition to norm
kopardev
committed
dbf699a

Commits on Jun 7, 2026

fix(slurm): change biowulf default partition from ccr,norm to norm
kopardev
committed
56ef217

Commits on Jun 8, 2026

feat(workflow): add progress logging to create_index rule
kopardev
committed
4b3bf7b

Commits on Jun 12, 2026