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@CellProfiler

CellProfiler

Software for quantitative analysis of biological images

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  1. CellProfiler CellProfiler Public

    An open-source application for biological image analysis

    Python 1.1k 409

  2. CellProfiler-plugins CellProfiler-plugins Public

    Community-contributed and experimental CellProfiler modules.

    Python 69 71

  3. CellProfiler-Analyst CellProfiler-Analyst Public

    Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    Python 164 75

  4. tutorials tutorials Public

    CellProfiler tutorial pipelines and images

    Jupyter Notebook 97 86

  5. examples examples Public

    Example CellProfiler pipelines.

    Makefile 16 14

Repositories

Showing 10 of 30 repositories
  • CellProfiler Public

    An open-source application for biological image analysis

    CellProfiler/CellProfiler’s past year of commit activity
    Python 1,054 409 323 35 Updated Oct 24, 2025
  • tutorials Public

    CellProfiler tutorial pipelines and images

    CellProfiler/tutorials’s past year of commit activity
    Jupyter Notebook 97 BSD-3-Clause 86 3 0 Updated Oct 21, 2025
  • CellProfiler-plugins Public

    Community-contributed and experimental CellProfiler modules.

    CellProfiler/CellProfiler-plugins’s past year of commit activity
    Python 69 71 21 13 Updated Oct 20, 2025
  • centrosome Public

    An open source image processing library

    CellProfiler/centrosome’s past year of commit activity
    Python 19 37 31 2 Updated Oct 9, 2025
  • CellProfiler-Analyst Public

    Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    CellProfiler/CellProfiler-Analyst’s past year of commit activity
    Python 164 75 70 1 Updated Jul 21, 2025
  • prokaryote Public

    CellProfiler’s Java dependencies

    CellProfiler/prokaryote’s past year of commit activity
    Java 3 GPL-3.0 11 3 2 Updated Jul 12, 2025
  • python-bioformats Public

    Read and write life sciences file formats

    CellProfiler/python-bioformats’s past year of commit activity
    Python 141 47 72 5 Updated Jun 12, 2025
  • python-javabridge Public Forked from LeeKamentsky/python-javabridge

    Python wrapper for the Java Native Interface

    CellProfiler/python-javabridge’s past year of commit activity
    Python 23 64 13 2 Updated Jun 12, 2025
  • core Public

    Core classes and components used by CellProfiler

    CellProfiler/core’s past year of commit activity
    Python 7 25 0 0 Updated Nov 12, 2024
  • .github Public

    Default files are stored here, such as code of conduct

    CellProfiler/.github’s past year of commit activity
    0 0 0 0 Updated Oct 27, 2024
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