updated guide and cleaned app

.github/workflows/ci.yml

@@ -91,7 +91,7 @@ jobs:
       - name: Run buildtool
         uses: matlab-actions/run-build@v2
         with:
-          tasks: compile  # change to compile
+          tasks: test  # change to compile
 
       # Configure GitHub Pages to accept your artifact uploads
       - name: Setup Pages
@@ -105,12 +105,12 @@ jobs:
         with:
           path: results # Upload results
 
-      # Upload compiled CTF file to deploy Web App
-      - name: Upload CTF file
-        uses: actions/upload-artifact@v6
-        with:
-          name: WebApp_CTF
-          path: WebAppArchive/*.ctf
+      # # Upload compiled CTF file to deploy Web App
+      # - name: Upload CTF file
+      #   uses: actions/upload-artifact@v6
+      #   with:
+      #     name: WebApp_CTF
+      #     path: WebAppArchive/*.ctf
 
       # Publish reports to GitHub Pages so they can be viewed in a browser
       - name: Deploy to GitHub Pages

code/ConcTimecourseView.m

@@ -34,13 +34,15 @@
             end
 
             ax = uiaxes(parent);
+            ax.ColorOrder = obj.ConcColors;
+
             xlabel(ax, "Time (hours)", 'FontName',obj.FontName);
             ylabel(ax, "Concentrations (nanomole/liter)",'FontName',obj.FontName);
 
-            obj.lhDrug = plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(1,:),'DisplayName','Drug');
+            obj.lhDrug = plot(ax, NaN, NaN, '-','Linewidth',2,'DisplayName','Drug');
             hold(ax,'on');
-            obj.lhReceptor = plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(2,:),'DisplayName','Receptor');
-            obj.lhComplex= plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(3,:),'DisplayName','Complex');
+            obj.lhReceptor = plot(ax, NaN, NaN, '-','Linewidth',2,'DisplayName','Receptor');
+            obj.lhComplex= plot(ax, NaN, NaN, '-','Linewidth',2,'DisplayName','Complex');
             hold(ax,'off');
             lgd = legend(ax,'show','FontName',obj.FontName,'Color','none');
             lgd.Box = "off";

code/ROTimecourseView.m

@@ -2,7 +2,6 @@
 
     properties ( Access = private ) 
         Model
-        Axes
 
         ThresholdStyle   = {'Color','r','Linewidth',2,'LineStyle','--',...
             'FontWeight','bold','LabelVerticalAlignment','middle'}; % style for threshold lines
@@ -12,8 +11,9 @@
         % Leave these properties Hidden but public to enable access for any test generated
         % with Copilot during workshop
 
-        % line handles
         lhRO
+        Axes
+
     end
 
     properties ( Access = public ) 
@@ -37,10 +37,11 @@
             end
 
             ax = uiaxes(parent);
+            ax.ColorOrder = obj.ROColors;
             xlabel(ax, "Time (hours)", 'FontName',obj.FontName);
             ylabel(ax, "RO (%)",'FontName',obj.FontName);
 
-            obj.lhRO = plot(ax, NaN, NaN, 'Color', obj.ROColors,'Linewidth',2);
+            obj.lhRO = plot(ax, NaN, NaN,'Linewidth',2);
             yline(ax,model.ThresholdValues(1), '--','efficacy','FontName',obj.FontName,obj.ThresholdStyle{:});
             yline(ax,model.ThresholdValues(2), '--','safety','FontName',obj.FontName,obj.ThresholdStyle{:});
             grid(ax,"on");

tests/tTMDDApp.m

@@ -44,11 +44,7 @@ function testChangeDosingAmountManualUpdate(testCase)
             oldlhComplex_YData  = testCase.App.ConcViewObj.lhComplex.YData;
 
             % Drag slider
-            % if batchStartupOptionUsed()
-            %     testCase.App.DosingAmountField.Value = 200;
-            % else
-                testCase.drag(testCase.App.DosingAmountSlider,100,200); % requires display (does not work on github)
-            % end
+            testCase.drag(testCase.App.DosingAmountSlider,100,200); % requires display 
 
             % Check plot update
             testCase.verifyEqual(oldlhRO_XData, testCase.App.ROViewObj.lhRO.XData, "x values for RO were updated");