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Add more options for tool parameterizations#1

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ClaraUktar wants to merge 10 commits intomainfrom
feat/increased-tool-parameterization
Draft

Add more options for tool parameterizations#1
ClaraUktar wants to merge 10 commits intomainfrom
feat/increased-tool-parameterization

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@ClaraUktar
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@ClaraUktar ClaraUktar commented Jun 2, 2024

For GMAP:

  • --min-trimmed-coverage
  • --min-identity

TODO:

  • Allow parameterization of these options
  • Update GMAP to newest version - MacOS
  • Update GMAP to newest version - Linux
  • Fix problem of empty GFF result files (containing only comment but no alignments)

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