added lfs files to runners #6

	name: Test the Countoscope
	on:
	# Run the workflow on pushes to the 'develop' branch and pull requests targeting 'develop'
	push:
	branches: [ develop ]
	pull_request:
	branches: [ develop ]

	jobs:
	# Specify the OS environment (Ubuntu) for the GitHub runner
	build:
	runs-on: ubuntu-latest

	steps:
	# Step 1: Checkout the repository, including submodules and any LFS-managed files
	- uses: actions/checkout@v2
	with:
	submodules: true
	lfs: true

	# Step 2: Set up Python 3.10.7
	- name: Set up Python 3.10.7
	uses: actions/setup-python@v2
	with:
	python-version: "3.10.7"

	# Step 3: Update pip, Install dependencies, Install the Countoscope
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install .

	# Step 4: Run tests using pytest
	- name: Test with pytest
	run: \|
	cd tests
	pip install -r requirements.txt
	pytest .

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