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make temp dir more robust#350

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Open

make temp dir more robust#350
y9c wants to merge 3 commits into
DaehwanKimLab:masterfrom
y9c:master

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@y9c

@y9c y9c commented Feb 14, 2022

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@cschu

cschu commented Apr 26, 2024

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Could we have that, please? With the temp dir being confined to "/tmp", HISAT2 is unusable in certain multiuser HPC environments with limited resources for node-specific /tmp-dirs.

@mourisl

mourisl commented Sep 9, 2025

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We recently made the "--temp-directory" option work (#442 ), would that resolve your issue too? Using "/tmp" would still be easier for documentation.

@cschu

cschu commented Sep 9, 2025

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Yea, that's even better. Thanks!

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3 participants