merge master, resolve conflicts, recreate requirements.txt

Exabyte-io · Jan 21, 2025 · a4ba707 · a4ba707
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diff --git a/images/notebooks/README.md b/images/notebooks/README.md
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+# Directory for Jupyter Notebook Images
+
+This directory contains images used for display within Jupyter Notebooks (e.g. in jupyterlite.mat3ra.com) with GitHub LFS permalink.
diff --git a/images/notebooks/coordination_based_passivation_settings.webp b/images/notebooks/coordination_based_passivation_settings.webp
diff --git a/images/notebooks/surface_passivation_settings.webp b/images/notebooks/surface_passivation_settings.webp
diff --git a/images/notebooks/terrace_settings.webp b/images/notebooks/terrace_settings.webp
diff --git a/...ron_nitride/0-figure-from-manuscript.webp → ...ron_nitride/0-figure-from-manuscript.webp b/...ron_nitride/0-figure-from-manuscript.webp → ...ron_nitride/0-figure-from-manuscript.webp
diff --git a/...ry_2d_boron_nitride/2-jl-setup-nb-gb.webp → ...ry_2d_boron_nitride/2-jl-setup-nb-gb.webp b/...ry_2d_boron_nitride/2-jl-setup-nb-gb.webp → ...ry_2d_boron_nitride/2-jl-setup-nb-gb.webp
diff --git a/...boron_nitride/3-jl-result-preview-gb.webp → ...boron_nitride/3-jl-result-preview-gb.webp b/...boron_nitride/3-jl-result-preview-gb.webp → ...boron_nitride/3-jl-result-preview-gb.webp
diff --git a/...ry_2d_boron_nitride/4-wave-result-gb.webp → ...ry_2d_boron_nitride/4-wave-result-gb.webp b/...ry_2d_boron_nitride/4-wave-result-gb.webp → ...ry_2d_boron_nitride/4-wave-result-gb.webp
diff --git a/...boron_nitride/5-jl-setup-nb-final-gb.webp → ...boron_nitride/5-jl-setup-nb-final-gb.webp b/...boron_nitride/5-jl-setup-nb-final-gb.webp → ...boron_nitride/5-jl-setup-nb-final-gb.webp
diff --git a/...nitride/6-jl-result-preview-final-gb.webp → ...nitride/6-jl-result-preview-final-gb.webp b/...nitride/6-jl-result-preview-final-gb.webp → ...nitride/6-jl-result-preview-final-gb.webp
diff --git a/...boron_nitride/7-wave-result-final-gb.webp → ...boron_nitride/7-wave-result-final-gb.webp b/...boron_nitride/7-wave-result-final-gb.webp → ...boron_nitride/7-wave-result-final-gb.webp
diff --git a/...tride/8-wave-result-final-gb-relaxed.webp → ...tride/8-wave-result-final-gb-relaxed.webp b/...tride/8-wave-result-final-gb-relaxed.webp → ...tride/8-wave-result-final-gb-relaxed.webp
diff --git a/...y_fcc_metal/0-figure-from-manuscript.webp → ...d_fcc_metal/0-figure-from-manuscript.webp b/...y_fcc_metal/0-figure-from-manuscript.webp → ...d_fcc_metal/0-figure-from-manuscript.webp
diff --git a/...ndary_fcc_metal/1-standata-import-cu.webp → ...ry_3d_fcc_metal/1-standata-import-cu.webp b/...ndary_fcc_metal/1-standata-import-cu.webp → ...ry_3d_fcc_metal/1-standata-import-cu.webp
diff --git a/...ain_boundary_fcc_metal/2-jl-setup-nb.webp → ..._boundary_3d_fcc_metal/2-jl-setup-nb.webp b/...ain_boundary_fcc_metal/2-jl-setup-nb.webp → ..._boundary_3d_fcc_metal/2-jl-setup-nb.webp
diff --git a/...undary_fcc_metal/3-jl-result-preview.webp → ...ary_3d_fcc_metal/3-jl-result-preview.webp b/...undary_fcc_metal/3-jl-result-preview.webp → ...ary_3d_fcc_metal/3-jl-result-preview.webp
diff --git a/...ain_boundary_fcc_metal/4-wave-result.webp → ..._boundary_3d_fcc_metal/4-wave-result.webp b/...ain_boundary_fcc_metal/4-wave-result.webp → ..._boundary_3d_fcc_metal/4-wave-result.webp
diff --git a/..._boundary_fcc_metal/5-wave-result-xz.webp → ...undary_3d_fcc_metal/5-wave-result-xz.webp b/..._boundary_fcc_metal/5-wave-result-xz.webp → ...undary_3d_fcc_metal/5-wave-result-xz.webp
diff --git a/...and_mos2_pt/0-figure-from-manuscript.webp → ...de_platinum/0-figure-from-manuscript.webp b/...and_mos2_pt/0-figure-from-manuscript.webp → ...de_platinum/0-figure-from-manuscript.webp
diff --git a/..._adatom_island_mos2_pt/1-jl-setup-nb.webp → ...num_disulfide_platinum/1-jl-setup-nb.webp b/..._adatom_island_mos2_pt/1-jl-setup-nb.webp → ...num_disulfide_platinum/1-jl-setup-nb.webp
diff --git a/...m_island_mos2_pt/2-jl-result-preview.webp → ...sulfide_platinum/2-jl-result-preview.webp b/...m_island_mos2_pt/2-jl-result-preview.webp → ...sulfide_platinum/2-jl-result-preview.webp
diff --git a/..._adatom_island_mos2_pt/3-jl-setup-nb.webp → ...num_disulfide_platinum/3-jl-setup-nb.webp b/..._adatom_island_mos2_pt/3-jl-setup-nb.webp → ...num_disulfide_platinum/3-jl-setup-nb.webp
diff --git a/...tom_island_mos2_pt/4-wave-result-top.webp → ...disulfide_platinum/4-wave-result-top.webp b/...tom_island_mos2_pt/4-wave-result-top.webp → ...disulfide_platinum/4-wave-result-top.webp
diff --git a/...om_island_mos2_pt/5-wave-result-side.webp → ...isulfide_platinum/5-wave-result-side.webp b/...om_island_mos2_pt/5-wave-result-side.webp → ...isulfide_platinum/5-wave-result-side.webp
diff --git a/...l_interface/0-figure-from-manuscript.webp → ...hene_nickel/0-figure-from-manuscript.webp b/...l_interface/0-figure-from-manuscript.webp → ...hene_nickel/0-figure-from-manuscript.webp
diff --git a/...el_interface/2-jl-setup-nb-interface.webp → ...phene_nickel/2-jl-setup-nb-interface.webp b/...el_interface/2-jl-setup-nb-interface.webp → ...phene_nickel/2-jl-setup-nb-interface.webp
diff --git a/...nickel_interface/3-jl-setup-nb-final.webp → ..._graphene_nickel/3-jl-setup-nb-final.webp b/...nickel_interface/3-jl-setup-nb-final.webp → ..._graphene_nickel/3-jl-setup-nb-final.webp
diff --git a/..._nickel_interface/4-energy-landscape.webp → ...n_graphene_nickel/4-energy-landscape.webp b/..._nickel_interface/4-energy-landscape.webp → ...n_graphene_nickel/4-energy-landscape.webp
diff --git a/...ne_nickel_interface/5-energy-heatmap.webp → ...ion_graphene_nickel/5-energy-heatmap.webp b/...ne_nickel_interface/5-energy-heatmap.webp → ...ion_graphene_nickel/5-energy-heatmap.webp
diff --git a/...nterface/6-jl-result-preview-compare.webp → ...e_nickel/6-jl-result-preview-compare.webp b/...nterface/6-jl-result-preview-compare.webp → ...e_nickel/6-jl-result-preview-compare.webp
diff --git a/...nickel_interface/7-wave-result-final.webp → ..._graphene_nickel/7-wave-result-final.webp b/...nickel_interface/7-wave-result-final.webp → ..._graphene_nickel/7-wave-result-final.webp
diff --git a/...on_nanowire/0-figure-from-manuscript.webp → ...ire_silicon/0-figure-from-manuscript.webp b/...on_nanowire/0-figure-from-manuscript.webp → ...ire_silicon/0-figure-from-manuscript.webp
diff --git a/..._silicon_nanowire/3-silicon-nanowire.webp → ..._nanowire_silicon/3-silicon-nanowire.webp b/..._silicon_nanowire/3-silicon-nanowire.webp → ..._nanowire_silicon/3-silicon-nanowire.webp
diff --git a/...ion_edge_silicon_nanowire/5-jl-setup.webp → ...ion_edge_nanowire_silicon/5-jl-setup.webp b/...ion_edge_silicon_nanowire/5-jl-setup.webp → ...ion_edge_nanowire_silicon/5-jl-setup.webp
diff --git a/...silicon_nanowire/6-jl-result-preview.webp → ...nanowire_silicon/6-jl-result-preview.webp b/...silicon_nanowire/6-jl-result-preview.webp → ...nanowire_silicon/6-jl-result-preview.webp
diff --git a/..._edge_silicon_nanowire/7-wave-result.webp → ..._edge_nanowire_silicon/7-wave-result.webp b/..._edge_silicon_nanowire/7-wave-result.webp → ..._edge_nanowire_silicon/7-wave-result.webp
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		# Directory for Jupyter Notebook Images

		This directory contains images used for display within Jupyter Notebooks (e.g. in jupyterlite.mat3ra.com) with GitHub LFS permalink.