FAST - Dependency build

This project is a CMake super build for dependencies of FAST.

Dependency list

• zlib
• zip
• dcmtk
• hdf5
• OpenIGTLink
• OpenVINO
• qt5
• tensorflow
• realsense
• jkqtplotter
• (OpenSlide)
• (libtiff)
• (libjpeg)

Usage

Requirements - Ubuntu Linux

Install the following tools (On Ubuntu 20.04 use GCC 8, not 9 or 10 as OpenVINO fails to build):

sudo snap install cmake --classic # Use snap to get more recent version of cmake on Ubuntu 18.04
sudo apt install g++ git patchelf
sudo apt install '^libxcb.*-dev' libx11-xcb-dev libglu1-mesa-dev libxrender-dev libxi-dev libxkbcommon-dev libxkbcommon-x11-dev
sudo apt install pkgconf libusb-1.0-0-dev # Needed for realsense

Install TensorFlow build tools:

• Install java if you don't already have it
• Install bazel 3.1.0: https://github.com/bazelbuild/bazel/releases/tag/3.1.0
• Install Python 3 with numpy 1.19.0
• Install CUDA toolkit (if GPU build)
• Install cuDNN (if GPU build)

Requirements - Windows

Install the following tools:

• Git
• CMake
• Visual Studio 2019 Community

Install TensorFlow build tools:

• Install java if you don't already have it
• Install bazel 3.1.0: https://github.com/bazelbuild/bazel/releases/tag/3.1.0 Put bazel.exe in path
• Install msys2 and some packages: https://docs.bazel.build/versions/master/install-windows.html#installing-compilers-and-language-runtimes
• Install Python 3 with numpy 1.19.0
• Install CUDA toolkit (if GPU build)
• Install cuDNN (if GPU build)

Setup

git clone https://github.com/smistad/FAST-dependencies.git
cd FAST-dependencies
mkdir build
cd build
cmake ..

Build all

cmake --build . --config Release -j8

Warning: This will take a very long time.
All packages will be located in the build/dist/ folder.

Build a specific dependency

To build dependency name:

cmake --build . -t <name>_package --config Release -j8

The package will be located in the build/dist/ folder.

Generate SHA for all files

SHA hashes can be generated with:

cmake --build . -t hash_all

Clean the build of a specific dependency

rm -Rf build_output/<name>/