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The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 12

  2. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  3. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  4. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 6

  5. sparks sparks Public

    Jupyter Notebook 6 1

  6. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

Repositories

Showing 10 of 132 repositories
  • CALM Public

    We are the Image Analysis Group at the Francis Crick Institute. Images are essentially grids of numbers and image analysis allows for the translation of these numbers into insights. Talk to us about analysis prior to acquiring any image data - we're happy to provide all the training you need.

    FrancisCrickInstitute/CALM’s past year of commit activity
    Jupyter Notebook 1 CC-BY-SA-4.0 2 4 0 Updated Feb 6, 2025
  • OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    FrancisCrickInstitute/OmeSliCC’s past year of commit activity
    Python 7 1 0 0 Updated Feb 6, 2025
  • Multiplex-Imaging-Registration Public
    FrancisCrickInstitute/Multiplex-Imaging-Registration’s past year of commit activity
    ImageJ Macro 0 CC-BY-4.0 0 0 0 Updated Feb 6, 2025
  • TWOMBLI Public Forked from wershofe/TWOMBLI

    A ImageJ Plugin implementation of TWOMBLI

    FrancisCrickInstitute/TWOMBLI’s past year of commit activity
    Java 0 4 1 0 Updated Feb 6, 2025
  • PARSEG Public

    A novel approach to tackle overlapping segmentation in bioimages. Vanessa Dao, ELMI 2024

    FrancisCrickInstitute/PARSEG’s past year of commit activity
    Jupyter Notebook 0 CC-BY-SA-4.0 0 6 0 Updated Jan 31, 2025
  • mito-synapto-spine-analysis Public
    FrancisCrickInstitute/mito-synapto-spine-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 27, 2025
  • network_invsync Public

    Verify ISE and YAML inventory are synchronized

    FrancisCrickInstitute/network_invsync’s past year of commit activity
    Python 0 GPL-3.0 0 0 11 Updated Jan 14, 2025
  • PooledPEScreen Public

    Accompanying code to "High-throughput screening of human genetic variants by pooled prime editing"

    FrancisCrickInstitute/PooledPEScreen’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 9, 2025
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow’s past year of commit activity
    Python 2 1 0 0 Updated Jan 7, 2025
  • TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    FrancisCrickInstitute/TRACERx-PHLEX’s past year of commit activity
    Shell 12 MIT 0 2 0 Updated Jan 6, 2025
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