convert_bufr update: bufr-query bufr2netcdf.x

[cohen-seth]

Description

Updating the bufr_to_ioda.py task from the convert_bufr suite to use the new executable bufr2netcdf.x from bufr-query. The previous executable bufr2ioda.x is deprecated. bufr2netcdf.x and bufr2ioda.x each have /require a specific yaml file format so a new yaml directory was added for the bufr2netcdf.x specific yamls for three observation types: amsua (ta) , mtiasi, mhs.

The key changes to bufr_to_ioda.py were:

• removing steps for generating the mapping yamls (the older method changed the actual contents of the yaml files)
• changes to account for the (full) CLI command changing from bufr2ioda.x [bufr file] [bufr_mapping.yaml] to bufr2netcdf.x [bufr file] [bufr_mapping.yaml] [output .nc file]
• added an observation type to the defaults in the convert_bufr/suite_config.py

The suite is working for these 3 observation types; however, these yamls, amsua & mtiasi, should still only by considered placeholders at the moment.

• bufr_to_ioda.py executable changed from bufr2ioda.x (deprecate) to bufr2netcdf.x
• New yaml files with format specific to bufr2netcdf.x added to new directory in configuration/jedi/bufr2ioda/bufr2netcdf_x/
• Working for 3 observation types: amsua (ta) , mtiasi, mhs

Impact

Should make the next set of changes easier if/when we integrate the use of the bufr-query ObsBuilder