feat: Add minimap2 2.30 binary to kenetre-mappers.

kenetre-mappers/src/main/java/files/linux/amd64/minimap2/2.30/compile.sh

@@ -0,0 +1,51 @@
+#!/bin/bash
+
+# This file contains the Docker instruction used to build the Minimap2
+# executable for Eoulsan
+
+VERSION=2.30
+DOCKER_IMAGE="minimap2-eoulsan:$VERSION"
+
+cat > Dockerfile << EOF
+############################################################
+# Dockerfile to build BWA container images
+# Based on Ubuntu
+############################################################
+
+# Set the base image to Ubuntu
+FROM ubuntu:16.04
+
+# File Author / Maintainer
+MAINTAINER Laurent Jourdren <jourdren@biologie.ens.fr>
+
+# Update the repository sources list
+RUN apt-get update
+
+# Install compiler and perl stuff
+RUN apt-get install --yes build-essential zlib1g-dev git
+
+# Get source code
+WORKDIR /tmp
+RUN git clone https://github.com/lh3/minimap2.git
+
+# Compile
+WORKDIR /tmp/minimap2
+RUN git checkout v$VERSION
+RUN make
+RUN cp -p minimap2 /usr/local/bin
+
+# Cleanup
+RUN rm -rf /tmp/minimap2
+RUN apt-get clean
+RUN apt-get remove --yes --purge build-essential zlib1g-dev git
+WORKDIR /root
+EOF
+
+#docker build --no-cache -t $DOCKER_IMAGE .
+docker build -t $DOCKER_IMAGE .
+
+if [[ $? -eq 0 ]]; then
+  docker run --rm -v `pwd`:/root -u `id -u`:`id -g` $DOCKER_IMAGE bash -c 'cp /usr/local/bin/minimap2 /root'
+  docker rmi -f $DOCKER_IMAGE
+  rm Dockerfile
+fi