fix(skill): preserve persisted scan options across skill runs

graphify/skill-agents.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-aider.md

@@ -111,7 +111,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 print(json.dumps(result))
 " > .graphify_detect.json
 ```
@@ -772,7 +774,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2))
 Path('.graphify_incremental.json').write_text(json.dumps(result))

graphify/skill-amp.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-claw.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-codex.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-copilot.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-devin.md

@@ -124,7 +124,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 print(json.dumps(result))
 " > graphify-out/.graphify_detect.json
 ```
@@ -911,7 +913,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result))

graphify/skill-droid.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-kilo.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-kiro.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-opencode.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-pi.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-trae.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-vscode.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skill-windows.md

@@ -145,7 +145,9 @@ If the import succeeds, print nothing and move straight to Step 2.
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding="utf-8")

graphify/skill.md

@@ -117,7 +117,9 @@ $(cat graphify-out/.graphify_python) -c "
 import json
 from graphify.detect import detect
 from pathlib import Path
-result = detect(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 # Write the sidecar from Python, not a shell redirect, so the same block renders
 # on PowerShell hosts without console-encoding drift (#2528).
 Path('graphify-out/.graphify_detect.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/agents/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/amp/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/claude/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/claw/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/codex/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/copilot/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/droid/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/kilo/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/kiro/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/opencode/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/pi/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/trae/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")

graphify/skills/vscode/references/update.md

@@ -12,7 +12,9 @@ import sys, json
 from graphify.detect import detect_incremental, save_manifest
 from pathlib import Path
 
-result = detect_incremental(Path('INPUT_PATH'))
+from graphify.paths import out_path
+from graphify.watch import _read_build_excludes, _read_build_gitignore
+result = detect_incremental(Path('INPUT_PATH'), extra_excludes=_read_build_excludes(out_path()), gitignore=_read_build_gitignore(out_path()))
 new_total = result.get('new_total', 0)
 print(json.dumps(result, indent=2, ensure_ascii=False))
 Path('graphify-out/.graphify_incremental.json').write_text(json.dumps(result, ensure_ascii=False), encoding=\"utf-8\")