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Use dedicated base R functions to simplify some code patterns Former-commit-id: 3c4d422 Former-commit-id: 72f971c507daf37a960fdfb97a793d1372c7c1d4
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+combine Former-commit-id: bacee93 Former-commit-id: 375d2c9c6643f5f21ffa331818b9257afdb87ba1
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simplified point/shape subsetting Former-commit-id: 3c155de Former-commit-id: 099394ec4f90c1027be169ca71bc2867964db0e7
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* revise validity to accept >2/3D * revise ome(ro) version retrieval * make use of new BiocGenerics * move EBImage to Suggests:, remove paws * minimal list of authors until further discussion Former-commit-id: f2189ec Former-commit-id: ca8904705621e30a292924ecac16fda8555af314
* use prototyped S4Vectors::SimpleList as slots * new path() method to retrieve on-disk file paths * more tests & validity * bump to v0.99.39 Former-commit-id: a2cbcda Former-commit-id: 2ac682d78bbd2348d9837d34154ac9d9b16b5205
* simplify code bits using seq_along(), lengths(), .data, etc. * assure layer lists are fully named (updated validity, tests, setters) * make SpatialDataImage/Label() accept single-arary (#216) * v0.99.40 --------- Co-authored-by: Hugo Gruson <git@hugogruson.fr> Former-commit-id: a49b09b Former-commit-id: 6576415293f70f15c73ebaf4521d5d4462455ca3
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* fix URL: and BugReports: * fix R CMD check warnings * in vignette, call spatialdataR::transform() explicitly * v0.99.41 Former-commit-id: cffa06f Former-commit-id: 5834adfcca72e389b24ac14d25ecb21d1aa743a0
* sda sub revision for >2/3 dims * crop multi-scale adjustment * divert badge to r-uni action * v0.99.42 Former-commit-id: 95343c1 Former-commit-id: dd5651ea94ff829c4123e891078c5e56fd5f5f30
* match scales in mask() * channels() bug fix * fix [,sdArray docs Former-commit-id: ce16614 Former-commit-id: ba54630a2332e224c1b9b4da5f0a7216ecb7c599
…justment * add axes() arg to return name/type/unit * >2D & multi-scale adjustment in centroids,label Former-commit-id: 110e8e7 Former-commit-id: 1fe92907f9ede257c0a98508d979a6e03afb3d46
* update sdArray validity & tests to allow time dim. * mask,image/label returns one assay per timepoint Former-commit-id: 4276392 Former-commit-id: 04e8420a6b5f827812d330252e291d75a68502c6
* refactor: identifier validation, multiscales & spatial axiis accession * SpatialDataAttrs() with >2/3d support * tests for show(), SpatialDataAttrs() * axes() arg to return name/type/unit * v0.99.43 Former-commit-id: 00782e7 Former-commit-id: 9e868cf3be784cc2034cc157ef7b8aa8c9c2bdaf
* factor out + test .sync_tables_on_crop * restructure utils * test 4D masking * v0.99.43 Former-commit-id: 0753bd4 Former-commit-id: 4ae0e4dc71933004b99f659ad273cd12f4dad797
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